Chiloscyllium plagiosum (whitespotted bambooshark): 122552211
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Entry
122552211 CDS
T08871
Name
(RefSeq) collagen alpha-1(XXV) chain isoform X1
KO
K24356
collagen type XXV alpha
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cpla00536
]
122552211
Glycosaminoglycan binding proteins [BR:
cpla00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
122552211
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
122552211
NCBI-ProteinID:
XP_043550766
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Position
1:118187716..118834773
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AA seq
706 aa
AA seq
DB search
MSAERSPKRSVPGQQQQQQLGAAGLSQGSRCSWCLGNALWLLLSAASLAFCVSLSVKTSQ
LEERILHLETAKGEPLPQRSASLPADRMRLLVQDRVEQLLNQGSYEDAGKRRTAREAPTA
CDCPAGPPGKRGRRGRNGEPGPPGPPGPKGDKGDQGDQGPRMAFPYPRVNHGFLSADQQF
IKRRLMKGDQGQAGPAGPPGPPGPPGPRGPPGDTGKDGPRGMPGAPGEIGPRGETGLMGP
QGPPGQKGSIGVTGVPGFHGQKGDSGKDGDPGPKGEIGERGDKGDVGKPGLKGDKGGKGD
PGSSAAGIKGEPGQPGHQGQKGEPGLPGLPGLPGIKGEPGFWGPQGEPGLPGLPGTKGEK
GDGGPPGRGEIGLPGPSGPKGEPGELGMPGRYGVKGDRGDPGDSGPMGPRGPPGQKGEQG
VTEIIDYNGNIHQALQRITTLTVTGPPGPQGSPGMPGPKGDTGNPGLPGAEGRQGPKGSK
GDIGVPGDKGSIGLPGLPGVNGEKGEKGEKGDHGSPGPKGTSVVGPPGPTGSQGPPGPMG
PHGLPGPKGEPGLNGVKGGKGEPGQKGDRGPLGLPGASGLDGQPGLRGLDGPMGPAGPAG
PKGDRGEKGAVGNPGPRGPTGLPGIDGDPGLDGFSGPKGDKGERGEKGLRGNKGEKGEPG
QPGLDGLDAPCQLVQYSFSYQPCMMSLMRQSVIMQSSGLIPFALQV
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
atgtcggcggagcgcagcccgaagcggagtgtgccagggcagcagcagcagcagcagctt
ggagccgcggggctgagccagggcagccgctgctcatggtgcctggggaacgcgctctgg
ctcctgctctccgccgcctcgctggcgttctgtgtcagcctcagtgtgaagacgtcccag
ctggaggagaggatcctgcacctggagactgccaagggagagcccctgcctcagcgaagc
gccagcctcccggccgatcggatgcggctgctcgtccaggacagagtggagcaacttctg
aaccagggatcttacgaagacgcggggaaacgcagaactgcccgagaggcaccgactgcc
tgcgactgcccagcaggtcctccaggaaagcgaggtagaagaggcaggaatggagaaccc
ggacctcctggtccacctggtccaaaaggtgacaagggtgatcaaggagatcaggggcca
cggatggcgtttccttacccaagagtcaatcatgggttcctatcggctgatcagcagttt
attaagcgacgtctcatgaagggtgatcaaggtcaagctgggccagctggtccaccgggg
cctcctggtcctccaggcccacgtggtcctccaggtgacacaggaaaggatggtcctcgg
ggaatgccaggcgcacctggggaaattggaccaagaggtgaaactggattaatgggaccc
cagggaccaccaggacaaaagggttcgataggagtcactggtgttccaggcttccacggg
caaaagggtgattctgggaaggatggtgatccaggccccaagggtgagattggagaacgt
ggtgataagggtgatgttgggaaaccaggactaaaaggtgacaaaggaggaaagggtgac
cctggatcatcagctgctggaatcaagggtgaaccaggtcaacctgggcatcagggacaa
aagggtgaaccaggtcttcctgggcttcctggacttcctgggataaagggtgaaccagga
ttttggggacctcagggagaacccgggttgcctggattaccaggaacaaagggagagaaa
ggagatggagggccaccaggaagaggtgaaataggcctacccggaccttcaggcccaaag
ggcgagccaggtgaactggggatgccaggccgctacggtgtaaagggtgaccgtggagac
cctggggattcagggccaatgggacccagaggtccacctggacaaaaaggagaacaaggg
gtaactgagataatagactacaacggcaatatccatcaagcactccagaggatcaccacc
ttaactgtgacgggaccaccagggcctcaaggatctccaggaatgccaggaccaaaggga
gacactggtaaccctggacttcctggagctgagggaagacagggtcctaaaggttcaaag
ggtgacattggtgttccaggcgataaaggaagcattggtttacctggattacctggtgtt
aatggagaaaagggagagaaaggagagaaaggagaccatgggtcacctggtccaaaaggc
acttcagttgtaggacccccaggacccactggctcacaaggcccaccaggtccaatgggg
ccacatggacttccaggaccgaagggtgaaccagggttgaatggtgttaaaggagggaag
ggtgaaccaggtcaaaaaggtgacagaggaccccttggtctcccaggtgcatctggctta
gatggacagccaggactgcggggtctcgatggtccaatgggtcctgcagggccagctggc
ccaaagggagataggggtgaaaaaggagcagttggtaacccaggcccaaggggacccaca
ggtttgcctggaattgatggagatccaggtttagacggtttctctggtccgaaaggagat
aaaggagaaaggggcgaaaagggtctccgaggcaataagggggaaaaaggggagccaggc
caacctggcctggatgggctggatgccccttgccaattggtacagtattctttttcctac
caaccctgcatgatgtctttaatgaggcaatctgtcataatgcaaagcagtggtctaatt
ccctttgcattgcaggtttag
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