Chiloscyllium plagiosum (whitespotted bambooshark): 122552214
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Entry
122552214 CDS
T08871
Symbol
xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Pathway
cpla03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122552214 (xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpla03019
]
122552214 (xab2)
03041 Spliceosome [BR:
cpla03041
]
122552214 (xab2)
Messenger RNA biogenesis [BR:
cpla03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
122552214 (xab2)
Spliceosome [BR:
cpla03041
]
Complex B
Other components
Prp19-related factors
122552214 (xab2)
Complex C
122552214 (xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_2
TPR_12
TPR_8
TPR_16
ARM_TT21_C
TPR_15
ARM_TT21
TPR_1
NRDE-2
RPN7
LTN1_E3_ligase_6th
Motif
Other DBs
NCBI-GeneID:
122552214
NCBI-ProteinID:
XP_043550781
LinkDB
All DBs
Position
8:complement(96887321..96934609)
Genome browser
AA seq
849 aa
AA seq
DB search
MNGSMQKHDVIFEEDDLPYEEEIIRNPYSVKCWIRYIEFKQSAPKHVVNMIYERALKELP
GSYKLWYNYLKQRRKQVKGKCITDPAFEEVNNCHERALVFMHKMPRIWLDYCQFLVDQCK
VTRTRRTFDRALRALPVTQHYRIWPMYLKFVRLFPLPETAIRVYRRYLKLSPENAEEYIV
YLRSIDRLDEAAVRLAGIVNDESFVSKEGKSNYQLWHELCHLISTNPDKVKSLNVGAIIR
GGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIQTVMTVRDFTQVFDSYAQFEES
MIAAKMETTAEMGQAEEDDIDLELRLARFEQLINRRPLLLNSVLLRQNPHNVHEWHKRVK
LYEGKPREIINTYTEAVQTVDPLKATGKPHSLWVSFAKFYEENSQIRDARTIFEKATKVN
FKHVDDLASVWCEYGEMELRHENYDEALQLLRRATAVPAKKAEYFDSTEPVQSRVYKSLK
VWSMLADLEESLGTFKSTKAVYDRIIDLRIATPQIIINYAMFLEEHNYFEESFKAYERGV
ALFKWPNVFDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPPKFAKTIYLLYAKLEEE
YGLARHAMAVYERATKAVEPLEQYEMYNIYIKRAAEIYGVTHTRGIYEKAIEVLPDEHAR
DMCLRFADMECKLGEIDRARSIYSYCSQLCDPRITPSFWQTWKEFEIRHGNEDTIREMLR
IKRSVQATYNTQVNFMSSQMLKASTNATGTVSDLAPGQSGMDDMKLLEQKAQQLAEEAER
EKPKPKDKILFVRSDASRSELAELTKQANPDEIDIDDDDDDEEGDEEPDEVPLEQKTVPT
AVFGGLKDD
NT seq
2550 nt
NT seq
+upstream
nt +downstream
nt
atgaacggctccatgcagaagcacgatgttatttttgaagaagatgatctgccatatgaa
gaggagataattcgcaatccttactctgttaaatgttggatccgctacatagagttcaaa
cagtctgcacccaaacatgtggtgaatatgatctatgagcgagcactcaaagaacttcct
ggcagttacaaattgtggtacaattacctgaaacagaggcggaaacaggtgaagggaaaa
tgtatcacagaccctgcatttgaggaggttaacaactgccatgagcgagccctggtcttc
atgcataagatgccacgcatttggctggactactgtcagttcctggtcgatcagtgtaag
gtaacgagaactcgtcgaaccttcgatagggctctccgtgccctccctgtcactcaacat
tatcgcatctggcctatgtacctgaagtttgttcgtttgtttcccttgccggagactgca
atcagagtctataggcgctacctgaagctgtcccctgagaatgctgaggagtacatcgtg
tacctccgctctatagatcggcttgatgaggctgcagtccggctcgctggcatcgtcaac
gatgaatcctttgtctcaaaagaggggaaatcaaactaccaactatggcatgagctttgt
catctcatttctacaaacccagacaaagtgaaatccctgaatgttggagccattatccgg
ggaggtctgactcgtttcactgaccaactagggaagctctggtgttctttagctgactac
tacattcgaagtggtcattttgagaaggccagagatgtgtatgaagaggcgattcaaaca
gtgatgacagttcgcgatttcacccaggtctttgatagttatgcgcagtttgaggagagc
atgattgcagctaaaatggaaacgacagcagaaatggggcaagcagaagaagatgatatc
gatctggagcttcgattggcacggtttgagcagcttataaacagacgtcccctccttttg
aacagtgtcctgcttcggcagaacccccacaatgtacatgagtggcataagcgggtcaaa
ctgtatgaaggaaagccgcgagagatcataaacacgtacacagaagcggtccagaccgtt
gacccgttaaaagccaccggaaagccacattcgctctgggtttcgtttgcaaagttttat
gaagaaaatagtcaaattcgggatgctcgaaccatatttgaaaaagccacaaaagtaaac
ttcaagcacgttgatgaccttgccagcgtttggtgtgaatatggggagatggaactgcgg
catgaaaactatgatgaggctcttcaattgctgaggcgagctactgcagtacctgcaaag
aaagctgagtactttgattcaacagagcccgtccagagcagagtgtacaagtcactgaag
gtctggtccatgttagcagatctggaggagagtctcggcacttttaagtccacaaaagcg
gtttacgatcggattatagatctccgaattgccacgcctcaaattatcatcaattacgca
atgtttctggaggaacacaactactttgaagaaagtttcaaggcctatgagagaggggtt
gctctgtttaagtggcccaacgtgttcgacatttggaacacttaccttaccaaattcatc
gatcggtatggtgggaagaaactggaacgagctcgagacctgtttgaacaagctcttgat
gggtgtccgccgaaatttgccaaaactatctaccttctgtatgccaagctggaggaggag
tacggtttagctcgccacgccatggctgtgtacgaaagagcaaccaaggcagtcgagcct
ttggagcagtatgagatgtacaacatctacatcaaaagagcggctgaaatatacggagtt
acccacacgcggggtatctacgagaaggcgattgaggtgttgccagatgaacacgctcgg
gatatgtgcctgcggttcgcagatatggaatgtaaactgggtgaaattgatcgggcccga
tccatttactcttactgctcgcagctctgcgatccacggataacaccatcattctggcag
acgtggaaggaatttgagatccggcatggaaatgaggacaccattcgcgaaatgttgcgg
attaaacgtagcgtgcaggccacatacaacacccaggtcaattttatgtcatcgcagatg
ttaaaagcctccactaatgccacaggcacagtctctgaccttgcgcctggacaaagtgga
atggatgacatgaagctgctggagcagaaagcacaacagttagcagaagaagctgagagg
gaaaaacccaaacccaaagacaaaattctgtttgtcaggagcgatgcgtctcgcagtgag
ctggctgaacttaccaaacaagccaatcctgatgagattgacatcgacgatgacgatgat
gacgaggaaggtgatgaagaacctgacgaggtgccactcgagcagaaaacagtccctaca
gcagtgtttgggggcctgaaggatgactga
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