Chiloscyllium plagiosum (whitespotted bambooshark): 122552616
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Entry
122552616 CDS
T08871
Name
(RefSeq) thrombospondin-2-like
KO
K04659
thrombospondin 2/3/4/5
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Pathway
cpla04145
Phagosome
cpla04510
Focal adhesion
cpla04512
ECM-receptor interaction
cpla04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
122552616
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
122552616
09144 Cellular community - eukaryotes
04510 Focal adhesion
122552616
09142 Cell motility
04820 Cytoskeleton in muscle cells
122552616
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cpla04131
]
122552616
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cpla04147
]
122552616
00536 Glycosaminoglycan binding proteins [BR:
cpla00536
]
122552616
Membrane trafficking [BR:
cpla04131
]
Endocytosis
Phagocytosis
Opsonins
122552616
Exosome [BR:
cpla04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
122552616
Exosomal proteins of colorectal cancer cells
122552616
Exosomal proteins of bladder cancer cells
122552616
Glycosaminoglycan binding proteins [BR:
cpla00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
122552616
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
TSP_1
TSP1_spondin
VWC
TSP1_CFP_C
EGF_3
TSP1_ADAMTS
Laminin_G_3
TSP1_CCN
Laminin_G_2
cEGF
Laminin_G_1
EGF
Motif
Other DBs
NCBI-GeneID:
122552616
NCBI-ProteinID:
XP_043551316
LinkDB
All DBs
Position
9:complement(11517995..11590419)
Genome browser
AA seq
1175 aa
AA seq
DB search
MLLSNGMLALLPVLLALGVRSQPLAVPRDEKAVFDLFAISNVNRQTPGVKLFRGPDPRKP
AFRFSRFDKIPAASGDQLQALLRLMNYHEGFILTATLRQDRKTRGTLLLIQGPGYKRQLQ
IVSNGVDNSLDLQYSVENTQNLASFHHVDIADSQWKNITVHVNGENANLYVDCELADSFI
LDDPIYEQLSATNGKLYVAKGLTPGSNFRGYLQNMHLIFGSSIVDILQSNGCLQIAEAAS
SKENQEFAGVSPAIKSDFIGHKTNKVVDFCDHSCSDIGNMFKELNGLRVLVSNLADGLVK
VTEENVIIRDILDDTLKNVRPGQCWHSGRLFDNEEEWTVDSCTKCTCQDFSIICRRITCP
PVSCANPSFIEGECCPSCLLKDSEDGWSPWSEWTECSVSCGTGTQQRGRSCDPTSSRCEG
PSIQTKSCQSVECDNRIRQDGGWSHWSPWSPCSVTCDEGITTRIRLCNSPVPQLDGQDCQ
GNGRETKQCIKAPCPIDGNWSPWSPWSVCTATCGGGLHERKRTCNNPVPKYGGKKCLGDA
KDSKICNNNVCPIDGCLSNPCFAGVECSSSPDGSWDCGPCPPGYRGNGTFCEDINECDEV
SDVCHQVNGVQRCVNTEPGFHCLPCPPRYRGNQPFGLGIEVAKTNKQVCEPHNPCKDKSH
NCHKYARCIYLGLFSDPLYKCSCRIGYAGDGIVCGEDSDLDGWPNEELACTANATYHCKK
DNCPHLPNSGQEDFDRDGVGDACDKDDDNDGRNDERDNCPLLYNPQQFDYDKDDVGDRCD
NCPYDHNPAQIDTDGDGEGDACSVDIDGDDILNENDNCPSVYNTDQRDTDQDGVGDMCDN
CPLMHNPDQEDSDSDLVGDQCDDNQDIDEDGHQNNLDNCPYVANSNQADHDKDGQGDACD
PDDDNDGIPDGRDNCRLVPNPDQLDADGDGRGDACKDDFDNDNIPDIFDVCPENNAISQT
DLRKFQMVHLDPKGTTQIDPNWVVRNQGKELLQTANSDPGLAVGFDEFNAIDFSGTFYVN
TDRDDDYAGFVFGYQSSSRFYVVMWKQVTQTYWEEKPSRAHGYAGVSLKVVNSTTGRGEH
LRNALWHTGNTPGQVRTLWHDPKNIGWKDYTAYRWHLIHRPKTGFIRVVVYEGKQIMADS
GPIYDKTLAGGRLGLFVFSQEALYFSDLKYECRDN
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
atgttactgagcaatgggatgctggccttgctgcctgtcctgttggcactgggggtcagg
agtcagcccctggctgttcctcgggatgagaaagctgtctttgacctgttcgccatcagc
aatgtgaacagacagactccgggagtgaagctgttccgaggccccgacccccgcaaaccg
gctttccgcttctcccggttcgacaagatcccggctgcctctggggaccagcttcaggcc
ctgctccgcctcatgaactaccatgagggcttcatcctgacggccactctgagacaggac
aggaagacccggggcaccttgctgcttatccagggcccgggctacaaacgccagctgcag
atcgtctctaacggcgtggacaacagcctggacttgcagtactcggtggagaacacacag
aacctggcctccttccaccatgtggacattgctgactcccagtggaagaacatcactgtc
catgtgaatggagagaatgccaacctgtatgtggactgtgagctagcggacagcttcatc
ctagacgaccccatttatgagcaacttagtgccaccaacggcaaactctacgtggctaaa
ggactaacaccaggcagcaacttcaggggctacttgcagaacatgcacctaatatttggc
tcatcgatagtggatattctccagagtaatggctgtctgcagatagctgaggcagcgagt
agcaaagaaaaccaagaatttgccggagtcagccccgccatcaagagcgatttcatcggg
cacaaaaccaacaaagttgtggatttctgcgaccactcctgcagtgacatcggaaacatg
ttcaaggagctgaacggactgagggtccttgtcagcaacctggcggacggactggtcaaa
gtgaccgaggaaaatgtaatcattcgtgatattctcgatgacactttgaagaacgtgcga
ccaggacagtgctggcacagtgggcgtctctttgacaatgaggaagagtggacagtggac
agctgtaccaaatgtacctgtcaggacttcagcatcatctgccggaggatcacgtgcccg
ccagtgtcctgtgccaatccgtctttcattgaaggagagtgttgcccttcctgtctcctt
aaggacagtgaagacggatggtcaccttggtcagagtggacggaatgttctgtctcctgt
ggcactgggacccagcaacggggacggtcatgtgatcccaccagcagccgctgtgagggc
ccctccatccagacaaaatcctgccagtcagtggaatgtgacaatcggattcgtcaggat
ggtggttggagccactggtctccctggtcaccgtgttcagtcacctgtgatgaaggcatt
accacccgcatccgactctgtaactcaccggtaccacagctggatggccaggattgtcag
gggaacggacgggagacaaaacaatgcataaaagctccatgccccattgacggtaactgg
agcccctggtccccatggtctgtctgcacagccacgtgtggcgggggattgcatgagcgc
aaacgcacctgcaataatccagtgcccaagtacggaggcaagaagtgcctgggagatgcc
aaggacagtaaaatatgtaacaacaacgtctgcccaattgacgggtgcctctccaatcca
tgctttgctggggtggagtgcagcagttccccagatggctcttgggattgtgggccatgt
cctcctggttaccggggcaacgggacattctgcgaggacatcaatgagtgtgatgaagtc
tctgatgtttgccaccaagtgaatggagttcagcgatgtgtcaatacggagcccgggttt
cactgtctgccctgcccaccgcgttaccgagggaaccaacccttcggcttgggaatcgaa
gtggccaagaccaacaagcaagtctgtgagccccataacccgtgtaaggataagtcccat
aactgccacaaatatgccaggtgtatctacctgggtcttttcagtgaccccctgtacaag
tgcagctgtcggatcgggtatgctggggatggcattgtttgtggagaagattctgacttg
gatggctggcccaatgaggagctggcttgcacagccaatgctacgtaccactgtaagaag
gataactgccctcacctgcccaactctggacaagaggactttgacagggatggagtgggt
gatgcttgcgacaaagatgacgataacgatggcagaaatgacgagagggacaattgccct
ctcctctataacccacagcagtttgattatgataaggacgatgtgggtgatcgttgtgac
aattgtccttacgaccacaacccagcgcagatcgacactgacggggatggggaaggtgat
gcctgttcagttgacattgacggagacgatatcctgaatgagaatgacaactgcccttct
gtttacaacactgatcagagggacactgatcaggatggggttggagacatgtgtgataat
tgtccgcttatgcataaccccgaccaggaagactctgattctgacctggtgggtgaccag
tgtgatgacaatcaggatatcgatgaagatgggcaccagaacaacctggacaactgccca
tacgtcgccaattccaaccaggccgaccacgacaaggatggtcaaggagatgcctgtgac
cctgacgatgacaatgatggcatccctgatgggagggacaactgccgccttgtccccaac
cctgaccaactcgatgctgatggtgatggcagaggagacgcgtgtaaggatgacttcgac
aacgacaacatcccagacatttttgacgtgtgtcctgagaacaatgccattagccagacc
gacctgaggaagttccagatggttcaccttgacccgaaggggacaacacagatcgatccg
aactgggtggtgcgtaaccagggcaaggagctgctgcagacagccaactctgatcctggc
ctagccgttggtttcgatgagttcaacgctatcgacttcagtggcaccttctacgtcaac
acggaccgtgatgatgactacgctgggtttgtgttcggttaccagtccagcagccgcttc
tacgtggtgatgtggaagcaggtcacccagacctactgggaagagaagccgtcccgagct
cacggttatgctggagtctccctgaaggtggtgaactccaccactggccgtggagagcac
ctgcggaatgccctgtggcataccggcaacacccctggacaggttcgaacattatggcat
gatcccaagaacatcggctggaaggattatactgcctacaggtggcatttgattcaccga
cccaaaacaggcttcatcagagtggtggtgtatgaaggaaaacaaatcatggctgactct
ggcccaatctacgacaagacattagctggcggacgactagggctgtttgtcttctcccaa
gaggccctctacttctctgacctcaaatacgagtgtcgagataactga
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