Chiloscyllium plagiosum (whitespotted bambooshark): 122552911
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Entry
122552911 CDS
T08871
Symbol
scaf8
Name
(RefSeq) SR-related and CTD-associated factor 8 isoform X1
KO
K13191
RNA-binding protein 16
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpla03021
]
122552911 (scaf8)
03041 Spliceosome [BR:
cpla03041
]
122552911 (scaf8)
Transcription machinery [BR:
cpla03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
122552911 (scaf8)
Spliceosome [BR:
cpla03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
122552911 (scaf8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
122552911
NCBI-ProteinID:
XP_043552063
LinkDB
All DBs
Position
9:65926576..66211780
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AA seq
1155 aa
AA seq
DB search
MEAVKAFNNELYSLNEYKPPISRAKMNQVTKAAIKSIKFYKHVVQSVEKFIQRCKPEYKV
PGLYVIDSIVRQSRHQFGPEKDVFAPRFCKNINTTFQNLYKCPADDKSKVVRVLNLWQKN
GVFKSEIIQPLLDLATGIPPPSVAPAVASTTAATVSSNTPGTPATPATPANVMQNLPDAW
ASISQLSNTDTIAAVAQLLQSPQGQQLQQLVQSLQMQQQKPQPSLLQALDAGLVVQLQAL
TAQLTAAATANTLNPLEQRLNFNKKLLDRFEYEEEQDHSEETKKETSASQLPLVTETMNT
SLFQQLAEQFQQQNFEQLRQQILEQQQTQQNATLDNQEVSFGSEQSVTPSQSSTHQQQEQ
EIRVEDPLEQQQQMPWVIKDMDIDAPDGQDLIEEDIFQHEEKKPLVRSRSLTHSRSRSRS
PRKKRSRSRSGSRKRKHRKRSRSRSKERKRKSSRSYSSERRAREREKERQKKGLPPIRSK
TLSVCSTTLWVGQVDKKATQQDITNLFEEFGQIESINMIPPRGCAYVCMVHRQDAFRALQ
KLSTGSFKMGSKIIKIAWALNKGVKPEYKQFWDVDLGVTYIPWEKLKLDDLEGFSEGGMI
DQETVNSEWESRNTEPVKENVIQPVTTESTQPTSQGETFTQAVTMLPVQIPVTPTVSAIS
MVQPPAFPVSMSIPPPGFNPAIPPPPFLRHSFNPSQPPPGYLPPPPVVPPPVVGPSIPPV
QTSLVCPPLSNTQDSTKDSPFGNLLSHIGSGHSNLPAPSIPPGSMFNPIGTQPLSSGPGG
SNDLGAPRTGSQTSSSETTSTSGPGTQSTVSTGSVLGLQPSTPAPGLPNLPPPSMVGPRI
PGVLPLDVRPGMMPPSPGQRFPLLMPPQPNLPPQPNLPPQQSMPPSLSIDRPLHSGSRAP
FPPVSSFSRLEGAFTRSAVPSSESSTNASQGTADERRSTGNDHSFQRNNIQQEGDRDYRF
PPVDNSDSLGRRDQFAFGPDQRWGSRDFDERERRAMPFGGPKGFHDDHEAYSGRNFRFDG
RSGPIWNRSFDQETHRDLDDRSRPWERQRDRDDRDFGFRRDVNGNRFGRDREQDHWVPPR
HRFDYFQGTTDHQKPDDRPRVNGDFSETNSQTPNKELANNDPEVSVNLASPSDGSVEKDD
LENQPVTENTDTEGT
NT seq
3468 nt
NT seq
+upstream
nt +downstream
nt
atggaggccgtcaaagcctttaataacgagttgtactcattgaatgagtataaaccaccc
atctccagggccaaaatgaaccaggtgacaaaggcggctatcaagtctattaagttctac
aaacatgtggttcagagcgtggaaaagtttattcaaaggtgtaaaccagaatacaaagtc
ccagggctgtatgttatcgactcaattgtgcgtcagtctcgtcatcagtttggtccagaa
aaggatgtgtttgcgcccagattttgcaagaacatcaatacaactttccaaaacttgtac
aaatgtcctgctgatgacaagagtaaagtagtgcgggtactgaacttgtggcagaagaat
ggagtgttcaaaagtgagatcatacaaccacttctggacctagcaactgggattccgcca
ccatctgtcgcccctgctgttgccagtactactgcagcaactgtgagcagcaacacacca
ggaactccagccacccctgctactccagctaatgtcatgcaaaacttacctgatgcgtgg
gcctccatctctcagctgtcaaacacagacacgattgctgctgttgcacagcttctgcag
agtccccagggtcaacagctccagcagttggtgcaaagtcttcagatgcagcagcaaaaa
cctcagccttctctgcttcaggctcttgatgctgggcttgtagttcaactgcaggcgctt
acagcccagcttacagcagctgcaactgctaatacactcaatccactggagcagcgactc
aattttaataagaaactccttgacagatttgagtatgaagaagaacaggatcattcagag
gaaaccaagaaagaaacatctgcatcccagctacctcttgtaactgagaccatgaacaca
tcactttttcagcagctggctgagcaattccagcagcaaaacttcgagcaacttcggcaa
cagatattggagcaacagcagacacagcagaatgcaactttggacaatcaggaagtaagt
tttggatctgaacagtcagtgaccccttcccagagcagcactcatcagcaacaagagcaa
gagatcagagtggaggatccacttgagcaacaacaacagatgccatgggttattaaggat
atggatattgatgcacctgatggtcaggaccttattgaagaagacatctttcagcatgaa
gaaaaaaagcctttagtacgttcaagatctctgacacactcaagatctcgttcaagatca
cctcgaaagaaaaggtccagatcccgctcagggtctcgcaagcgcaaacatcggaaacgc
tctcgctcaagatcaaaagaaagaaaaaggaagtcgtctcgatcctattccagtgaaaga
cgagcaagggagcgtgaaaaggaacgccagaaaaagggtctaccacctatccgttcgaaa
acacttagtgtatgcagtactacactgtgggttggtcaggtagacaaaaaggcaacacaa
caagatataaccaatctctttgaggagttcggccagattgaatcaataaatatgatacca
cctcgaggatgtgcatacgtttgtatggttcatcgacaagatgcttttcgtgctcttcag
aaactaagcactggatcctttaaaatggggtctaaaattattaagattgcttgggcttta
aataaaggtgtgaaacctgaatataagcagttttgggatgtggaccttggcgttacatat
attccatgggaaaaattgaaattagatgatttggaaggcttttctgagggaggcatgatc
gaccaggaaactgttaatagtgagtgggagtcaaggaacactgagcctgtaaaagagaat
gtgatccaacctgtaactactgaaagcactcaaccaacatcacaaggagagacattcaca
caagctgtcactatgctacctgttcagatcccagtgactccaactgtttcagcgattagc
atggtgcagccaccagcctttcctgtatcaatgtctatccctcctccaggcttcaaccca
gccattccaccacctccatttttacggcacagttttaatccttcgcaaccaccaccaggt
tacctaccaccgccaccagtcgttccacctccagttgttgggccttctattcctccagta
caaacctctctagtttgcccgcctctttccaacacccaagacagtacaaaggattccccg
tttgggaacctactttcacacataggctctgggcacagcaatctcccagctcctagtatt
ccaccagggagtatgtttaatccaattggcacacagcctctctcttctggtccaggtgga
tcaaatgacttaggggcaccacgcacaggtagccaaacgtcatcatctgaaacaacatct
acttctgggccaggaactcaaagtacagtttcaactgggtcagttctgggattgcaacca
tcaacacctgcaccaggactacccaatttgccacctccaagtatggttggaccaaggata
cctggagtactcccactggacgtgcgtcccggaatgatgccaccatcgccaggacagcgg
tttccattgctgatgccccctcagccgaacctgccccctcagccaaacctgccccctcag
caaagcatgcctccttcgttatcaattgacagacctcttcactcagggtccagagctccc
tttccaccagtaagttctttcagtaggcttgaaggagcatttacaagatctgcagtcccc
agttctgagagcagtactaatgcaagccaaggtactgcagatgaaagaagatctactgga
aatgatcattcttttcagcgaaacaacatacaacaagaaggtgatcgggattatcgcttc
ccaccagtggataacagcgacagtcttggaagacgtgatcaatttgcatttggtcctgac
caaagatggggctcgagagattttgatgaacgtgagcgtcgtgccatgccctttggtggt
cctaaaggttttcatgatgatcatgaagcatatagtggaagaaatttcaggtttgatgga
agaagtggtccgatatggaaccggagttttgaccaggaaacccatagggatcttgatgat
cgcagtaggccttgggaacgccagagagatcgtgacgaccgagattttggctttcgccga
gatgtaaatggaaaccgttttggaagagacagagagcaagatcactgggttcctcctcgg
cataggtttgactattttcaagggaccactgatcaccaaaaacctgatgataggcctcgg
gtaaatggtgacttctcagaaacaaacagccagacaccaaacaaggagctcgcaaacaat
gaccctgaagtgtctgtgaaccttgcatctccatcagatggaagtgtggagaaggatgac
ttagaaaatcaacctgtaaccgaaaacacagataccgaggggacataa
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