Chiloscyllium plagiosum (whitespotted bambooshark): 122553132
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Entry
122553132 CDS
T08871
Name
(RefSeq) synaptopodin-2-like isoform X1
KO
K24066
synaptopodin-2
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Pathway
cpla04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
122553132
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
cpla04990
]
122553132
Domain-containing proteins not elsewhere classified [BR:
cpla04990
]
PDZ domain-containing proteins
Other PDZ domain-containing proteins
122553132
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
Calsarcin
Pept_S41_N_bact
DUF7037
Motif
Other DBs
NCBI-GeneID:
122553132
NCBI-ProteinID:
XP_043552633
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All DBs
Position
1:complement(129449753..129576580)
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AA seq
1286 aa
AA seq
DB search
MGIGDYICVTISGGAPWGFRLQGGKEHKQPLQISKVRKKSKACRAGLCEGDEMISINGKP
CSELIHSEAMQLIDGTSENLQILIKRPISEKADQPEYEDYEGTKRHETVESRMQVSDSKT
SCKHGLPFELYISESQDEAYYGETESDTDVMGKKEGNQRQNVSSLLLKECATSGESRQDP
KWKEKRGAQHMAMVELQLSLTQGKLGDPETTAITVIGAEKIPSAAREPTTLYESIQKTES
AASETNGNVTTQTASTTISHQNRSDKKVKLVESELQGTEADSYQSRVELSLDSSDREHSG
REASTSEVGSACADSLAEDGQSKTRSNPPFLVGISSEGTEPGSEGTRSGKDSIRTHKHRA
RQAKIRRSESLSEKQVKEAKSKCKSIALLLTATPTPSSKGALMFKKRRQRAKKYTLVSYG
TGEFDPDDDQEDSIEFALVPTSDSDLDEDFCADVNSAQVVTFDWDTGLVEVEKKEKTEDE
MQRLPESKGKGALLFAKRKQRIDQFTAEQEEMRRTGANEAASTHTVETENLYQTTKSSLY
DSSNTIQNHATENYIDVSKLHGTENVQGGKGRSEMVIQNSKSAETNRAGAMNRTAIPFPG
VQNRAAAPFSPTRNVANSLSNVPPPPPYSSISPPPDNIHRIASPPLASVAQPAKWSPMGI
AGEQIASRDERICVPAIKTGILQDARKRNTTKPMFTFVDRPKVAPNPELLSMVKGKTDRR
RGVDQPGGGFESGPEEDYLSLGAEASNFLQTPAVKQKKPPPVAPKPFVKSPPTEPNPTLP
PLSPTEVTSAQAPVHSSKSAKQMPVKLHSVQPVNTWYQSQGSANQFVSSTGPQSVTSTHS
YPSKMPPTTPIANSAPAGGMGPAYEMPALKGKGAQLFARRQSRMEKYVVDSSTVKARQAR
SSSPTPSMPASWKYSSNIRAPPPLAYNPIHSPSYPPGILKAQAQSASSSKPNKGAKGKGT
KKPLNALDVMKHQPYQLNSSLFTFSSTSDAKTPLSTSSSLSKQSIKSDPVPLQPVNATYP
ISKSVSSVSTGPSFNQANTASADEEHIYSSGKNAFLPPSYASYPKQESSALSVAMAPRPK
FSAKKVGVTAQAQSKGFQPVQVPEKLSQYNYSHGLSGAQAMKQPATPSSGRPASQSEKIA
KKKLTPWDAASQSAVGSVEEAFSRRNIQESIAKNIVSAARRKTLPEPPEEWKARVAYVPP
LPSGYSSVAAFQVRRPSSISSSVKTTASIPTSISQQSSMYKLPLNYQQSLTDSDLSTGTC
SEHETSGKQVADPNYNPYPRGWKKQR
NT seq
3861 nt
NT seq
+upstream
nt +downstream
nt
atgggcattggggattacatctgtgtcacaatcagtggtggagcaccctggggattcaga
ctgcaaggtggcaaggagcacaagcagccattacagatttcaaaggtccggaagaagagt
aaggcctgcagagctggactatgtgagggagatgaaatgatctcaatcaacggtaaacct
tgttcggaattaatccattcagaagccatgcaactgattgatgggacaagtgaaaatcta
caaatcctgattaaaaggcctatcagtgagaaagctgatcagccagaatatgaagattat
gaaggaacaaagaggcatgaaacagttgaaagcaggatgcaagttagtgacagtaaaaca
tcttgcaagcatggccttccttttgaactttacatctctgagtctcaggatgaggcttac
tatggggagacagagagtgacacagatgttatgggcaagaaagaaggaaaccagagacag
aatgtctctagcttgcttttgaaagaatgtgccacttctggagaatcccggcaggaccct
aaatggaaggagaagagaggtgcccaacatatggccatggtggagctccagttgtccctg
actcaaggaaagcttggtgatccagagacaactgctattaccgtcattggggctgaaaaa
atcccttctgcagccagagagccaaccacactgtatgagagtatccagaaaactgaatca
gcagcatcagaaactaatggaaatgttacaacccagactgcctcgactactatatcacac
cagaacaggagtgacaaaaaggtcaagctggtcgaaagtgagctgcaaggaacagaagca
gattcatatcagtctcgggtggagctgtctttggattcctcggacagagagcatagtgga
agggaagcctccacgtctgaagtaggtagtgcatgtgctgactcgttggctgaagacgga
cagtcaaaaacacgtagcaaccctcctttcttggttgggatttcatcagagggaacagag
cccggatcagaagggacacgctctgggaaggattctataagaacacacaaacaccgagct
aggcaagccaaaattcgacggagtgaaagtctgtcagaaaaacaggttaaagaagccaag
tcaaagtgtaaaagcattgccttgctcctgacagcaactcctacccccagctccaagggg
gcattaatgtttaagaagcgtcgccagagggcaaaaaagtatactttagtcagctacggc
actggggagtttgatcctgacgacgatcaagaagactccatagaattcgctctggtacca
accagcgactcagatcttgacgaggacttttgtgctgatgtcaactcagctcaggttgtg
acatttgactgggacacaggtttagtggaagttgaaaagaaagagaagacagaagacgaa
atgcagagattaccagagagcaagggcaaaggtgcattgttgtttgccaagaggaagcaa
aggattgatcaattcacagctgagcaagaggaaatgaggagaacaggagcgaatgaagct
gcctccactcacactgtagagactgaaaatctttaccaaacaacaaaaagcagtttatat
gattcatcaaacacaatacaaaatcacgccactgaaaattatattgatgtaagtaagttg
catggaactgaaaatgtacaaggagggaaagggagatctgaaatggtgatccagaactca
aagtctgctgaaaccaatagagcaggtgcaatgaacagaacagcgataccatttcctggt
gtgcaaaatcgagctgcagctcccttctctcctacaagaaatgtggcgaattccttgtca
aatgtacctccccccccaccctattcttccattagtccaccacctgacaatattcatcgc
attgcatctcctcctttggcatccgtggctcaaccagccaaatggtcaccaatgggaatt
gcaggagagcagatagcctccagagatgagagaatctgtgtaccagcaataaaaactggc
attttacaagatgcaagaaaacggaacactacaaagcccatgtttacatttgttgaccgt
cctaaggtagctccaaatccagaactcctgtcaatggtcaaaggtaagacagaccgacgt
agaggagtagatcagcctggtggaggttttgagtcaggacctgaagaagattatcttagt
ttaggtgcagaagcatcaaattttttacagacaccagcagtaaagcagaagaaaccacct
ccagttgcaccaaagccatttgttaagagccctcctactgagccaaacccaacattacca
ccgttatcacctacagaagtcaccagtgctcaagctccagtccattcttctaagagcgct
aagcagatgcctgtaaaattgcattcagttcaacctgttaatacatggtaccagtcccaa
ggttctgccaaccagtttgtatcttcaactggaccccaatcagtaacatcaacacattca
tatccttcaaaaatgccacccacaactcccatagcaaattctgcacctgctggaggtatg
ggtccagcctatgagatgccagctttgaaaggtaaaggagcacagttatttgcaaggaga
caatcccgcatggagaaatatgtagtagattcatcaacagtcaaagccagacaagcacgg
tcatcatcccccaccccttccatgccagcatcttggaagtattcatctaacataagagca
cctccccctttggcttacaatcctattcattctccatcttatcctcctggcattttgaaa
gcacaagcacaatctgcatcttcatctaagccaaataaaggtgccaaaggtaaaggcacc
aaaaaacctctcaatgctttggatgtcatgaagcatcaaccatatcagcttaattcatct
ttgttcactttttcatccacttctgatgctaagacacctctgtccacaagctcatcactt
tctaagcagtctataaagtctgatcctgttccacttcaaccagttaatgctacatatcct
atttctaagagtgtctcatctgtgtcaacaggaccatctttcaatcaagctaatacagct
tctgctgatgaggagcatatctattcttctggaaagaatgcctttctacccccaagttat
gcatcatatccaaagcaagaatcaagtgctttgtcggttgccatggcaccaagaccaaag
ttttcagcaaagaaagtgggcgttacagcacaggcgcagtcaaaaggtttccaacctgta
caagtaccagaaaagctatcacaatacaactattctcatgggctttctggagcacaagca
atgaaacagccagcaaccccgtcatctggaagaccagcatcccagtcagagaaaattgca
aagaaaaaactgaccccatgggatgctgcatcacagtctgctgttggttcagtagaggaa
gcattttccagaaggaatatccaagagtcaatagcaaagaatattgtgtcagcagcccgc
cgaaagacattacctgagcctccagaggaatggaaggcacgagtagcctatgtaccacca
cttccaagtggttactcatctgttgctgctttccaggtcagaagaccatcgagcatatca
tcctcagtcaaaactacagcatcaattccaacatctatcagccaacagagttcaatgtat
aaactgccactaaattatcagcaatcactgactgattcagatctatctactgggacatgc
tctgaacatgaaacttcaggaaagcaggtagctgatccaaattataacccttatccacgg
ggctggaagaaacaaagatga
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