Chiloscyllium plagiosum (whitespotted bambooshark): 122553175
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Entry
122553175 CDS
T08871
Symbol
msh2
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Pathway
cpla03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
122553175 (msh2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cpla03400
]
122553175 (msh2)
DNA repair and recombination proteins [BR:
cpla03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
122553175 (msh2)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
AAA_27
T3SS_needle_reg
Motif
Other DBs
NCBI-GeneID:
122553175
NCBI-ProteinID:
XP_043552697
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All DBs
Position
9:complement(28408315..28501569)
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AA seq
943 aa
AA seq
DB search
MAVQPRDRLSGADSGQDGGAFVAFYKSMPEKPDTTFRVFDRNDYYTVHGKDAMFAAREVF
KTNGVIKTLGSGGFWGREGCKSRKSSYIFVIKLMWAVSSVATLNLEDNDNASEYNYCRVK
KLIVPLIFPSVQASPGNLTQFEEVLFGNSDMSAAAAVVGVKLGMADGQRLVGVGYVDSTL
RKLGVCEFPDNDQFSNLEALLVQIGPKECVLSGGETAGDGTKLRQIVQRGGVLITDRKKS
EFTNKDIVQDLNRLLKGKKGEQVSSAALPEMEKQVAMSSVSAVIKYLELLSDKTNFGQYE
LITFDLSQYMRLDNAAVSALNLFQGASEDPSNTQSLAGLLNKCKTPQGQRLVNQWIKQPL
MDKNRIEERLNLVEAFVDDTELRQNLQEDLLRRFPDLNRLAKKFQRQAATLQDCYRIYQA
VIHLPNMVQVLDRYEGVHKMLLKDVFISPLTDLISDFGKFQELIETTLDLNQVENHEFLV
KPSFDPNLTELREKMDNLEKDMQSTLNQAARELGLEAGKTVKLESNAQLGYYFRVTCKEE
KALRNNKKFNTIDIQKNGVRFTNSKLTSYNEDYMKSREEYEEAQNVIVKEIINISAGYVE
PQQTLNDVIAQLDAVVSFAHVSNGAPVPYVRPKIFEKGHGRITLKASRHPCIEVQDDMAF
IPNDVTFEKDKQMFHIITGPNMGGKSTYIRQTGVVVLMAQIGCFVPCDSAEISIVDCILA
RVGAGDSQLKGVSTFMAEMLETASILRSATEQSLIIIDELGRGTSTYDGFGLAWAISEYI
ATKICAFCMFATHFHELTALADQVPTVNNLHVTALTTDETLTMLYRVKKGVCDQSFGIHV
AELAQFPKHVIQSAKDKAMELEEFQNIGNSGDSDEGPAAKKSRQEKQDGERIIAEFLSNI
KALPITKMSEEDVKQELMKLKSEVLAQNNSFINEIISRSTISL
NT seq
2832 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcaacctcgggacaggttgtccggagcggacagcgggcaggatggtggtgcc
ttcgttgccttctacaagtctatgcccgagaaaccggacaccacttttcgtgtctttgac
cgtaatgactactacacggtgcatgggaaggacgcgatgttcgcagccagggaggtgttc
aaaaccaacggagtgatcaagactctgggatcgggtgggttctggggccgagagggatgc
aagtccagaaaatcatcctacatttttgtaattaaactcatgtgggccgtgtcctcggtc
gctacattgaatctggaggataatgacaacgcaagcgagtataattactgtcgagtaaaa
aaactaattgttcctcttatttttccctctgtacaggcttctcctggtaacctcactcag
tttgaagaggtactttttggcaacagcgatatgtctgctgcagctgccgtagtgggtgtt
aaactgggcatggcagatgggcagaggttagttggtgttggctacgttgactccacactg
cggaagcttggtgtgtgtgagttcccagacaatgatcagttttccaatctggaggctctg
ttggtgcagattgggccaaaggaatgtgttttatcaggtggcgagacggcaggagatggc
actaaacttcgacagattgtacaacgaggaggcgtcttgataacggatagaaagaaaagt
gagtttacaaataaggatattgtacaagatctaaaccgcctgctgaaagggaagaaagga
gaacaagtgtcaagtgctgctttgccagagatggaaaaacaagtcgccatgtcttctgtt
tctgctgtgatcaaatatttggagcttttgtctgataaaactaactttggccaatatgag
ttgattacatttgacctgagccagtatatgaggctggataatgctgcagtcagtgcactt
aatctttttcagggtgcatcagaagatcccagtaatacacagtcattggctggtttactg
aacaaatgtaagacccctcagggacagcgtctcgtcaatcagtggatcaaacaaccactg
atggacaagaataggattgaggagagattgaacctggtggaagcttttgtggatgacact
gagttacggcagaacttacaggaggatttgcttcggcgctttcctgaccttaaccgtctg
gcgaagaagttccagcgtcaggcagcaactctacaggactgctatcggatttatcaggct
gtcattcacctcccaaatatggtgcaggtgttggatagatatgaaggtgtacacaagatg
ttattgaaagatgtgtttatctccccattgactgaccttatctctgattttggcaagttt
caggaattgattgagacgacattagacctgaaccaagtggaaaaccatgagttcctagtg
aagccatcgtttgacccaaatctaactgaactcagagagaagatggataatttggagaaa
gatatgcagtcaacactcaaccaagctgcaagggagctaggtcttgaagctggcaagact
gtgaaactggagtcgaatgctcagttgggttattatttccgtgtcacttgcaaggaggaa
aaggctcttcgtaacaataagaaatttaacaccatagatatccagaagaacggagtccga
ttcactaacagtaaattgacatcatacaatgaggattatatgaagagtagagaggagtat
gaagaagctcagaatgtgattgttaaagaaatcatcaatatctcagcaggatatgtggaa
cctcagcaaactttaaatgatgtgattgctcaactggatgcagtggtcagttttgcccat
gtatctaatggagcgccagtgccgtacgtaagacctaagatctttgagaagggccacggt
cgaattaccttgaaggcttccaggcatccatgcattgaggttcaggatgatatggccttc
atacccaatgatgttacctttgagaaggataagcagatgttccatataataacaggtcca
aacatgggtggtaaatcaacatatatccgacagactggtgtggtggttctgatggctcag
attggttgttttgtgccctgtgactctgcagaaatcagtattgttgattgcatccttgct
cgagttggtgctggagacagtcagctgaaaggtgtttcaaccttcatggcggaaatgttg
gagacagcatctattttgagatcagcaactgaacagtctctgattattattgatgaattg
ggaagaggcacctctacatatgatggctttggactggcctgggctatatcagaatacatt
gctactaagatttgtgcattttgtatgtttgccactcatttccatgagttgactgcccta
gctgaccaagtaccaacagtcaacaacttgcacgtgacggcgctcaccacagatgaaaca
ctaactatgctgtaccgtgtaaagaaaggtgtttgtgaccagagttttggtattcatgta
gctgagcttgctcagtttcccaaacatgttattcaaagtgccaaggacaaagccatggag
cttgaggagttccaaaacattgggaattctggggattctgatgaagggcctgcagctaag
aaatcccgtcaagaaaagcaggatggtgaaaggatcattgcagaatttttgtcaaatatc
aaagctttaccgattactaaaatgtctgaagaagacgttaagcaagagctgatgaagctg
aagtctgaagtgctggcacagaataacagttttatcaatgaaattatttcacgatctaca
atctccctataa
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