Chiloscyllium plagiosum (whitespotted bambooshark): 122553342
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Entry
122553342 CDS
T08871
Symbol
dicer1
Name
(RefSeq) endoribonuclease Dicer isoform X1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cpla03036
]
122553342 (dicer1)
Chromosome and associated proteins [BR:
cpla03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
122553342 (dicer1)
microRNA pathway
RISC loading complex
122553342 (dicer1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Dicer_platform
Dicer_dsRBD
Ribonuclease_3
Dicer_PBD
Dicer_dimer
Ribonucleas_3_3
PAZ
DEAD
Helicase_C
ResIII
Cas3-like_C_2
dsrm
DSRM_2
SLFN-g3_helicase
Motif
Other DBs
NCBI-GeneID:
122553342
NCBI-ProteinID:
XP_043552850
LinkDB
All DBs
Position
10:4002163..4190482
Genome browser
AA seq
1924 aa
AA seq
DB search
MAGLQLMTPASSPMGPFFGLPWQQEAIHDNIFTPRKYQVELLEAALEHNTIVCLNTGSGK
TFIAVLLTKELSHQIRGQFNKNGSRTVLLVSSAPSVVQLAAAVKTHSDLKVGEYSSMENI
ESWASKEWNKSFVGQQVLVMTCHIFLHILKRGYLFLSKINLLVFDECHLAIREHPYQEIM
KMCEENPSCPRILGLTASILNGKCDPSELEEKILKLEKILRSSAETATDLVVLDKYSSQP
HEVVLDCGPYEDKSGLYEKLLKELDEALNFINDFNNISAHWDDRGPTSVPKQVLVDCRAV
LTVLGPWCADKVAGMMVRELQKYIKHEQEELNRKFLLFTDTLLRKIHALCEEHFSPAALD
LKYVTPKVSKLLEILHEYKPFERQQFESVEWYNNRNQDNYVSWSDSEDEDEDEEIEEKEK
TDTNFPSPFTNILCGIIFVERRYTAVVLNRLIKEAGKQDPELSYVSSNFITGHGIGKNQP
RNKQMEVEFRKQEEVLRKFRAHETNLLIATSVVEEGVDIPKCNLVVRFDLPTEYRSYVQS
KGRARAPISNYIMLSDSDKIEDFKEDLKTYKAIEKILRNKCSKSVDSADLEVEPVTDDDD
VLPPYVLRPEEGSPRVTINTAIGHVNRYCARLPSDPFTHLAPKCKTQELSDCTFQSTLYL
PINSPLRVPVTGPPMPCTRLAEKAAALLCCERLHKIGELDDHLMPVGKETVKYEEELDLH
DEEETSIPGRPGSTKRRQCYPKAIPECLRNSYPKANQPCYLYVIGMVLTTPLPDELNFRR
RKLYPPEDTTRCFGILTAKPIPRIPHFPVYTRSGEVTISIELRKSDFTLSTKQLELITRL
HQYIFSHILRLEKPALEFKPTEADAAYCVLPLDKVDGSSHLDIDFTFMEDIERSEARTGI
PNTQYTKEKPFMFNLEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPSPEYETFA
EYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQN
KQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQTAKEAGVGIEALPSNF
RYPNLDFGWKKSIDSKAYILTTSSCTDENETYCMHSTTVAPEDAAHRGAINEPPFMENLL
QPSLNSKTSTKSLSPKKFFSADKVTKSTIPVNGIVCTENLTNGNAELLNKGCICHQNQLN
SCRHDLLIQPATSVPVRSTHHRENQPKPQVECNLQSNNLDGITNKSTSDCCSKEAVSCNS
SEPLAIPQWILDSGSCPPGIYTTETLGPNPGLILQALTLSNASDGFNLERLEMLGDSFLK
HAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVNWLPPG
YVVNQDRCIMDKSEVKDMTETDQVANGDCYLDDDEEEEEEEDDDPDFREDLMWRAQKEEA
EYDDDFSEYDQEHIKFIDNMLMGSGAFGKKISLPAFPPNDASYEWKPPKKSASGNGHSSS
DCDEFDYSSWDAMCYLDPSKATDEDDFVVGFWNPSEENGGVDTGKQSISYDLHTEQCIAD
KSIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLPAEEKLVNKKILPEEQSAFDLNSQT
GTETPPLSSTLKSPSCKDLEYGHLQIPPRCMFDHPDADRTLGHLISGYENFEKKINYRFK
NKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSA
LVNNTIFASLAVKYDYHKYFKAISPELFHVIDDFVQFQLEKNEMQGMDSELRRSEEDEEK
EEDIEVPKAMGDIFESLAGAIYMDSRMSLETVWQVYYPMMRPLIEKFSANVPRSPVRELL
EMEPETAKFSPAERTYDGKVRVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSLKANQPP
LQNS
NT seq
5775 nt
NT seq
+upstream
nt +downstream
nt
atggcaggattacagctcatgacgcctgcttcatcaccaatgggtcccttttttggactg
ccgtggcaacaggaagctatccatgataacatttttacaccaaggaaatatcaggttgaa
cttctagaagcagctttggaacataatactatagtttgtttaaatactggctcagggaag
actttcattgcagtgctacttacaaaggagctatctcatcagatcaggggacaattcaac
aagaatggatcacggactgtgcttttggttagttctgcgccctctgtggttcagctagca
gcagctgtcaagacccattcagacctgaaggtcggagagtattccagtatggaaaacatt
gagtcatgggcaagcaaagaatggaacaaaagctttgttggacaacaggtgctagtcatg
acttgccacatcttcttgcacatcttgaaaaggggctaccttttcctctccaaaatcaac
cttctagtgtttgatgaatgccaccttgcaatcagagaacatccctatcaggagattatg
aagatgtgtgaggagaatccttcatgccctcggatcttgggactgactgcctccatttta
aatggtaaatgtgacccttctgagctagaggagaaaattttgaagctggaaaagattctc
aggagcagtgcagagactgccactgacctggtagtgttggacaagtattcttctcaacct
catgaagttgtgcttgactgtggaccatatgaggataaaagtggactgtatgaaaagctt
ttaaaggagttggatgaggcacttaattttattaatgatttcaataacatatctgcacat
tgggatgatagaggtccaacgtcagtccctaagcaggtactggtagactgccgtgcagta
ttaaccgttctggggccttggtgtgcagataaagtagctgggatgatggtaagagagctg
cagaaatatataaaacatgagcaggaggagttgaacaggaagttccttttgtttacagac
actcttcttaggaaaattcatgcactctgtgaagagcacttctcacccgctgcactcgat
ctgaaatacgtgaccccaaaagtcagtaaattgctggaaatcctgcatgagtacaaacct
tttgagcggcagcagtttgaaagtgttgaatggtacaacaacagaaaccaggacaattat
gtatcatggagtgattctgaagatgaggatgaggatgaagaaatagaagaaaaggagaag
actgacactaacttcccatcccctttcaccaatatattatgtgggattatttttgttgag
agacgttatacagcagtcgtcttaaacaggttaataaaagaagcaggcaagcaggatcca
gaattgtcttatgtcagcagtaatttcataactggtcatggcattggaaagaaccagcct
cgtaataaacagatggaagtggagttcaggaaacaagaggaggtgctcagaaaattccgt
gcgcatgagaccaacttgctcattgcaaccagtgttgttgaagaaggagttgatattcca
aaatgcaatctagtggttcgatttgatttgccaacagaatatcgctcttacgtacaatcg
aaaggaagagcacgagcacccatctcaaactacatcatgctttcagattctgacaaaatt
gaagatttcaaagaagacctcaaaacctataaggcaattgaaaagattctgcgaaacaag
tgctcaaagtctgtggattctgctgatttggaggtagaacctgtcaccgatgatgatgat
gtgcttcccccgtatgtattgaggccagaagaagggagtccgcgagtaactatcaacact
gccattggacatgtgaacagatactgtgccaggttaccaagcgacccattcacacacttg
gccccaaaatgtaaaacgcaggaactctcggattgtacttttcagtcaactctctacctt
ccaattaactcacctcttcgtgtcccagtaactggtcctccaatgccttgtacaagattg
gctgagaaagcagcagcccttctttgttgtgaaagactgcacaaaataggtgaacttgat
gatcacttaatgccagttgggaaagaaactgtgaaatatgaagaagagcttgatttgcat
gatgaggaagaaaccagtattcctggaaggccaggttccacgaaacggagacagtgctac
cctaaagcaattcctgaatgtctgaggaacagttacccaaaagcaaatcaaccttgttac
ttgtatgtgattggcatggtgttaaccactccgcttcctgatgagctcaacttcagaaga
agaaaattgtatcctccagaagatacaacccgatgttttggaattctgactgccaaacca
atacctcggattcctcattttccagtatatactcgctctggtgaggttaccatatctatt
gaactacgtaaatcagacttcacattgagtacaaagcagctggagctgatcactaggcta
catcagtatatcttctctcacattcttcgtctggagaaacctgcactagaattcaagcct
acagaagctgatgcagcctactgtgttctacctcttgataaagttgatggttccagccac
ttggatatcgacttcacctttatggaagatatagaaaggtcagaagcacgcacgggcatt
cccaacacacaatatactaaagagaaacccttcatgtttaatctggaagattaccaggat
gcagttatcattccaagatatcgaaattttgaccagcctcatcgcttctatgtggccgat
gtatacaccgatctcacacctctcagtaaatttccttcccctgagtatgaaacatttgca
gagtattacaaaaccaagtacaatcttgatttgaccaacctgaaccagcctttgctggat
gtggaccacacatcgtccagactgaaccttttaacccctcgacatttgaatcagaaagga
aaggcacttcctttaagtagtgcagagaaacgcaaggccaaatgggagagtctgcaaaac
aaacagattcttgtcccagaactctgtgctattcatccaatcccagcttccttatggaga
aaggcagtctgccttcccagtattctctatcgactgcactgtttgttaacagcggaggag
ctgagagcccaaacagcaaaggaagccggcgtgggaattgaagctctcccttcaaacttc
aggtatcccaacctagattttgggtggaaaaaatctatagacagcaaagcttacatcttg
acaaccagctcctgtacagatgaaaatgagacttactgtatgcacagcacaactgtagcc
cctgaagatgctgcacatcgaggtgctatcaatgagccccccttcatggagaaccttctt
caaccgtctctgaacagcaaaacatctaccaagagtctgtcacccaaaaagttcttcagt
gctgacaaagtcaccaagagcacaataccagtaaatggcatagtttgtaccgaaaatcta
accaatggaaatgctgaactgctaaacaagggttgcatttgccatcaaaatcaacttaac
tcctgcaggcatgacttactcatacaaccagctacctcagttcccgtgcgtagtacacac
cacagagagaaccagcccaagccccaagttgaatgtaatctacaaagtaataacctagac
ggaattactaacaaatctacctcagattgttgctcaaaagaggcagtttcctgcaattcc
tcagagcctctggcaattccgcaatggattttggattcgggcagttgcccccctggcata
tatacaaccgaaaccctcggccccaaccccggtctgattctccaggctttgacgttgtca
aatgctagcgacgggttcaatttggagcgcctggagatgcttggtgattcattcctaaaa
catgctatcacaacgtatctgttttgtacgtaccctgatgcccacgaagggcggctatct
tacatgaggagtaagaaggtcagcaactgtaatctctatcgtcttggaaagaagaaagga
cttcctagtcggatggttgtctcaatatttgacccaccagtgaattggcttcctcctggc
tacgtggtaaatcaagacagatgcattatggacaagagtgaagtgaaggacatgacagaa
accgatcaagtggctaatggtgattgttatttggatgatgatgaggaggaggaggaagag
gaggacgatgaccctgatttccgtgaagatttgatgtggagggcacagaaggaggaagca
gaatatgatgatgacttctccgagtatgatcaggagcacattaaattcatcgacaatatg
cttatgggttctggggcttttggaaaaaagatctctcttcctgctttcccacccaatgat
gcaagctacgagtggaaacctcccaaaaaatctgcatcaggaaatggtcattcctcctcc
gattgtgatgaatttgactacagctcctgggatgctatgtgctaccttgacccgagtaag
gctacagatgaagatgattttgttgtgggattctggaacccatctgaagagaatggcggt
gttgatactggcaagcagtccatctcttatgacttgcacactgagcagtgcatagcggat
aagagcattgctgattgtgtagaggctttgttgggctgctacctaactagctgtggtgaa
agagctgcccagctgtttctctgctcgttgggtttgaaagtcctcccagcagaagaaaag
cttgtaaacaaaaagatcctacctgaggaacagagcgcctttgatctaaactctcagaca
ggcactgaaactcctcctctttcatccactttgaaatccccttcttgcaaagacctagag
tatggacatcttcagattcctcctagatgtatgttcgatcacccagatgctgataggacc
ctgggccatttaatatcaggctatgaaaactttgagaagaaaataaactatagattcaag
aacaaggcgtatcttttacaggcatttacccatgcctcctaccactacaatacaatcaca
gattgttaccagcggttggaattccttggagatgcaattttggactacctcataaccaag
cacctttacgaagatccccggcagcattctcctggagtgttgactgacctgcgctctgct
cttgtgaacaataccatctttgcttctttagctgtgaagtatgactatcacaaatacttc
aaagccatctcacctgagttgttccatgttatagatgactttgttcagttccagttagaa
aagaatgagatgcaaggaatggactctgagctaagaagatctgaagaagatgaagaaaag
gaagaagatattgaggttccgaaggccatgggagatatctttgaatctcttgccggtgcc
atctacatggatagcaggatgtccttggaaacagtttggcaagtctattaccccatgatg
agacccttgatagagaaattttcagcaaatgtaccccgttcccctgttcgtgagttgttg
gagatggagccagagactgccaagttcagtcctgcagaaagaacttacgacggaaaagtc
cgtgtcaccgtggaggtggttggcaaaggcaagttcaaaggtgttggtcgcagttacagg
atcgccaagtctgcagctgcccggagagcactacggagcctgaaggcaaatcagcctcca
ctgcagaatagctga
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integrated database retrieval system
