Chiloscyllium plagiosum (whitespotted bambooshark): 122553357
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Entry
122553357 CDS
T08871
Symbol
nrde2
Name
(RefSeq) nuclear exosome regulator NRDE2 isoform X1
KO
K26109
nuclear exosome regulator NRDE2
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpla03019
]
122553357 (nrde2)
Messenger RNA biogenesis [BR:
cpla03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
122553357 (nrde2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NRDE-2
HAT_PRP39_N
HAT_Syf1_CNRKL1_N
Suf
HAT_PRP39_C
Motif
Other DBs
NCBI-GeneID:
122553357
NCBI-ProteinID:
XP_043552887
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All DBs
Position
10:6244618..6312614
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AA seq
1160 aa
AA seq
DB search
MEPLSGSLFPAFGVRESRCASGSEGLDWLSNQSFRTEDALQLHHRIVGDAADTTQGSPQA
SDHSGISGGVLDRGAQDAPAKKKKKKKKHRQHRKEKRKDRAIHTDSESDPELFRHKDTET
PAERSDSSAGLPQGQFMWLDDLHLQTAQTFCIDRKADPANWEYKSLYRGDLARYKRCGDV
CLGLDTRKQHIIWEDSPRPKKKARKRDDRYYSSSGLQFLSTGPVPVRCRECVQGSIPVSG
TNSFIPVPDWAEIESKSLGTVTWFNPLGIYDESTALWLQGKGREEPEKQACVPSDSSEKI
NWVNMAKVEMFNRMLREDPGNVQTWMEFVRFQDELMQDPSPYMTSAAESEKRKRSRRAVW
EKKLAILERAIESNPDNVELKVARLELGKESWEPSNLVNEWKKVVFLHPNNTTLWQRYLL
FCQSQFSTFSTSKVNGIYGKCLSTLAAALDGTLLSHPALPDTEEAMLAIFLQQCHFLRQT
GHSEKAIALFQALIDFTFFKPDSVAGLITKAQVEFFEPFWDSDEPRFGEGGARGWRVWMR
QQERGGWVVLNEKGDDEDEEEDGEEVTDKTLPKWQLWLHVESSRDSKHCLPWRADKAKGQ
TEEDCEDPDRQVLFDDIGSSMFKVSSPELRFQLMSSFFQLLGIPTGFSLPPCCLNVVLDD
PGVFDCGSADERPLSCCPPPAAGVSTIGFMPAMPNARQPVSHCPEGEDFIQTAFHQALPL
FTGKERSELALYWLQYEKSKVVRSLQLRRKKQLKSLGKRSKKLAKNLLKEGENRNNLSLW
REYAHLEWLLGNVEDSRRVFDTAIAMSVSQGLQSSTLCDLCFLYSSLELESVQSVSASTT
MRAVYILTSLALGITYSPYAGEVLPVNVLKARKTYERSFRDSPTHDAALTGSQRPGQLIS
LMGCFALFQYLTLGIQAADSLYGQAAERLVGLSSVEKAQPKPSVWRQSVMCALERLTVMH
VRLLGFHMQASVYPLGPVRHTLTHALGQYPGSLQLWKLYTQVESRSHDASRARRFFDATA
RSAQDLIVPRLFAIYAEERRKERVDAVQRADLGILYNTFPETGLTNRIRALFEYAVQTEA
GAHSVLLWRMYLNFTVTQGNIEKTKGVFYRALQACPWAKVLYLDAVSHLPGQLQEIIDLM
TEKEIRIRAPLEELEILMED
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atggagccgctgtcgggctccttgttcccggcgttcggtgtgagggaatcccgctgtgca
agtggctctgagggattggattggctcagtaatcaaagcttccgcactgaagatgccctg
caactgcaccatcgtatcgtgggcgatgcagcagacacaacccaggggtcaccccaggca
agtgatcattcagggatatctgggggagttttggatcgaggcgcacaagatgcaccggcc
aaaaaaaagaagaaaaagaagaaacatcggcagcacagaaaggaaaagaggaaggacaga
gcgattcacaccgacagcgaatctgatcctgaactcttccgacataaagacacggagact
cctgcagagaggtctgactccagtgctggtcttcctcagggtcaattcatgtggctggat
gacctccatctgcaaactgcacagaccttctgtatagacagaaaagctgatcctgccaac
tgggagtacaagtcactctatcggggagatttggcaaggtacaagaggtgtggggatgtc
tgccttggccttgacaccagaaagcagcacattatctgggaagattcaccccgaccaaag
aaaaaggccaggaagagggatgatcgatactacagctcatcgggccttcagttcctgagc
actggccctgttcctgttcgctgtagagagtgtgtgcaaggaagcattcctgtgtctggt
acaaactccttcataccagttccagactgggcagagattgaaagtaaatccttaggcact
gtcacctggttcaatccacttggaatttacgatgaatccaccgctttgtggctccaggga
aaaggccgagaggagccggagaagcaagcctgcgtgccctccgatagcagtgagaagata
aactgggtaaacatggccaaagtggagatgttcaataggatgttgagagaagaccctggg
aatgtccaaacctggatggagtttgttcgttttcaggatgaattaatgcaggacccaagt
ccgtacatgacctctgcagctgagtctgagaaacggaagagatcccgaagggctgtctgg
gagaaaaagctggccattttggaacgggccattgagagcaatcccgacaatgtggagctg
aaagtagcccggctggagctcggcaaagaatcttgggaaccatccaatctggtcaacgaa
tggaaaaaggtggtctttctacacccaaacaacaccactctgtggcagaggtacctgctg
ttctgccagagccagttcagcaccttttcgacatccaaggtcaatggtatctatggcaag
tgcctgagtaccctggcagctgctctggatggtaccctactgtcccatcctgcactgcct
gacacagaggaagccatgcttgcaattttcctgcagcagtgtcacttcttgcgacagact
ggccattcggaaaaagccattgccctcttccaggctctcattgacttcaccttcttcaaa
cctgacagtgttgctggcctgataaccaaggcacaggtggagttctttgaaccgttctgg
gacagtgatgagccccggtttggagaaggaggggcaagaggttggagagtttggatgcga
cagcaagaaaggggcggctgggttgtcctgaatgagaaaggcgacgatgaggatgaggag
gaagatggggaggaggtcacggacaagacactgcccaagtggcagctttggttacatgtg
gagagcagccgtgactccaagcactgtttgccatggcgagctgataaggcgaagggtcag
actgaagaagactgtgaggatcctgacagacaggtgctgtttgatgacattggttcttca
atgttcaaagtatccagcccagaactgaggttccagctcatgtcatcgtttttccagttg
ctgggaattccaacaggattcagcctgcctccgtgctgcctgaatgtggtgctggatgat
cctggagtgtttgactgtggctcagctgatgagagacctctgtcttgctgtccccctcca
gctgctggggtcagcaccatcggcttcatgccagcaatgcctaatgccaggcagccagtc
agccactgcccagaaggggaggacttcatacaaaccgcgtttcaccaggcgttgcccctg
ttcactgggaaggagcggtcagagctcgccctgtactggctgcagtatgaaaaatcaaag
gtggtgaggagcttgcagctcaggagaaagaagcagctgaaatctctggggaagaggagc
aagaaactcgctaaaaaccttctgaaagagggtgaaaaccggaacaatctgtccctgtgg
agggaatacgcccatttggaatggctgctggggaatgtggaggactcgagaagggttttt
gacacggccattgctatgtctgtctctcagggcctgcagagctccaccctgtgtgacctc
tgcttcctgtactcctcactggagctggagtcagtgcagagtgtcagcgcgtcaacaaca
atgcgggcggtttatatcctcaccagccttgccctgggtatcacctactcaccttacgca
ggtgaagtgctgccagttaatgtgctgaaggctcgaaaaacatacgagcgatctttccgg
gactcgcccacccatgacgcagctttaaccggcagccagaggcctggccagctcataagc
ctgatgggctgcttcgccctcttccagtacctgacgctgggcatccaggctgccgactca
ctgtacgggcaggcagctgaaaggcttgtaggcctctcctcggtggaaaaggcccagccc
aagccgagcgtgtggcgacagagtgtgatgtgtgcgttggagaggctgaccgtgatgcac
gtgaggctgctggggttccacatgcaggccagcgtgtatcccctgggccctgtccgccac
acgctcacacacgctctgggccagtatcctggcagcctccagctctggaagctctacacg
caggttgaaagccgctctcacgatgccagccgagcgcgaaggttcttcgacgccactgcc
aggtcagcgcaagacctcatcgtgccgcggctgtttgccatctacgcagaagagcggaga
aaggagcgtgtcgacgctgtgcagcgggcagatcttgggattttgtacaacactttccca
gaaactgggctcaccaaccggatccgagcgctgtttgagtacgctgttcagacagaggct
ggtgcacactctgttttactttggaggatgtacctgaacttcacggtgactcaaggaaac
attgagaagacaaagggtgtattttacagagcactgcaggcgtgcccatgggcaaaggtg
ctatacttagatgcagtcagccacttacctggacaactccaagaaataatagacttaatg
acggaaaaggagattcggatcagagctcctctggaggagttggaaattcttatggaagat
tga
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