Chiloscyllium plagiosum (whitespotted bambooshark): 122553446
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Entry
122553446 CDS
T08871
Symbol
cpsf2
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Pathway
cpla03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122553446 (cpsf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpla03019
]
122553446 (cpsf2)
Messenger RNA biogenesis [BR:
cpla03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
122553446 (cpsf2)
U7-dependent histone pre-mRNA processing factors
122553446 (cpsf2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-GeneID:
122553446
NCBI-ProteinID:
XP_043553144
LinkDB
All DBs
Position
10:complement(26292352..26334475)
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AA seq
785 aa
AA seq
DB search
MTSIIKLTTISGVQEESALCYMLQVDEFRFLLDCGWDESFSMDIIDALKKYVHLVDAILL
SHPDPLHLGALPYAVGRLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEEFSLFTLDDVD
AAFDKIQQLKYSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR
EIHLNGCSLEMISRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIALDTA
GRVLELAQLLDQIWRTKDAGLSVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN
NPFQFRHLSLCHSLSDLARVPSPKVVLASQSDMECGFSRDLFIQWCQDPKNSVILTYRTT
PGTLARYLIDNPNTKKMDIEIRRRVKLEGKELEEYLEKEKLKKEAAKKQEQEKERDVDSS
DESDVEEDMDQPLTGKTKHDLMMKSESSRKGSFFKQAKKSYPMFPATEERMKWDEYGEII
RAEDFLVPELQAAEEEKSKLDSGLSNGEEPMDQDLSDVPTKCISALETIEIRARVTYIDY
EGRSDGDSIKKIINQMKPRQLIIVHGPPESSQDLAEACKAFGGKDIKVYTPKLQETIDAT
SETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVLDMRVSKVDTGVILEEGELREDEEGE
MQVDAPSSTHNSDQVAAQQKAMKSLFDDDEKETNEDLDVIPTLEPLSPNEVPGHQAVFIN
EPRLSDFKQVLLREGIQAEFVGGVLVCNNLVAVRRTETGRIGLEGCLCEDYYKIRDLLYE
QYAIV
NT seq
2358 nt
NT seq
+upstream
nt +downstream
nt
atgacatctatcatcaaactgaccactatttccggagtccaggaggaatcagctctgtgc
tatatgctgcaggtggatgagttccgctttttgcttgattgcggctgggacgaaagcttc
tccatggatataatcgatgcactgaaaaaatatgttcatttggttgatgcaatcctcctt
tctcatcctgatcccttacacttgggagctcttccttatgctgttggaaggctgggttta
aattgtgcaatttatgccacaattccagtttacaagatgggacagatgtttatgtatgat
ctgtatcagtctcgacacaacactgaagagttctccctgtttactttggatgatgtagat
gcagcatttgataagattcagcaactgaaatattcccagattgttaacttaaaaggtaaa
ggacatggtttatccataacgcctttgcctgcaggtcatatgattggaggaacaatctgg
aaaattgtaaaagatggagaagaggagattgtgtatgcggttgactttaaccataagaga
gaaatccatctgaatgggtgttcactggaaatgattagccggccctcattactcatcaca
gattctttcaatgcaacctatgttcagccacgaagaaagcaacgagatgaacaattgctc
accaacgtcctggaaactttgcgtggtgatggcaatgtgctaattgcactggacactgca
ggcagagtgctggagctagctcaacttctcgatcaaatttggagaacaaaggatgctgga
ctaagtgtctattctcttgccttgctcaataatgttagctataatgtagtggagttttct
aaatctcaggtagaatggatgagcgacaagttaatgagatgttttgaagacaagcgaaac
aatccctttcagtttcgtcacctttctttgtgccacagcctatcagacctggcccgagta
cccagtccaaaggttgtattagccagtcagtcggacatggaatgtgggttttcacgtgat
cttttcatacaatggtgccaagatccaaaaaattctgtaattctcacttacagaacgaca
cctggaacactggcacggtacttgatagataatcctaacaccaaaaaaatggatatcgag
attagacgtcgtgtaaaattagaagggaaagagttggaagagtatctagagaaagaaaag
ctcaagaaagaggcagctaaaaagcaggaacaagagaaggagcgagatgttgactccagt
gatgagagtgatgttgaagaagacatggaccaacctttaactggaaaaaccaaacatgat
ctcatgatgaaaagtgagagcagtcgcaaaggaagctttttcaaacaggctaaaaaatca
taccccatgtttccagcgacagaggaaagaatgaagtgggatgaatatggagaaataata
agagctgaggatttcttggttccagaacttcaagcagcagaagaagagaagagcaaactc
gattctggtctgagtaatggtgaggagcctatggatcaggatttatctgatgttccaaca
aagtgtatctcagctttagaaaccatagaaatcagagccagggtgacatatattgattat
gaaggacgctcagatggtgactctattaaaaaaattattaatcagatgaaaccccgacag
ttgatcattgttcatgggcctccagaatctagccaagatctggctgaagcatgcaaagca
tttggtggaaaggacattaaagtttacacaccaaagcttcaagaaacaatagatgctact
agtgagacgcatatctaccaggttagactaaaggattctttagtcagctctctccagttc
tgtaaagcaaaggatgcagagttagcttggatagatggtgtcttggatatgagggtatca
aaggtagatacaggggtcattctggaagaaggtgagttaagagaggatgaagaaggagaa
atgcaggttgatgctccctcatctacacataactctgaccaagttgcagctcagcaaaaa
gctatgaagagcctttttgatgatgatgaaaaagagaccaatgaagatcttgatgtaatt
cccacactggaaccattgtcaccaaatgaggttcctggtcatcaagcagtcttcattaat
gagccaaggttatctgattttaaacaagttcttttgcgggaaggtattcaagcagaattt
gttggaggtgttctggtctgcaacaatttggtcgctgttcgaagaactgagacaggacgt
attggactggagggatgtttatgtgaagattattataaaatacgggacctcttatatgaa
caatacgcaattgtataa
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