Chiloscyllium plagiosum (whitespotted bambooshark): 122553458
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Entry
122553458 CDS
T08871
Symbol
hif1aa
Name
(RefSeq) hypoxia inducible factor 1 subunit alpha a isoform X1
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Pathway
cpla04137
Mitophagy - animal
cpla04140
Autophagy - animal
cpla04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
122553458 (hif1aa)
04137 Mitophagy - animal
122553458 (hif1aa)
04148 Efferocytosis
122553458 (hif1aa)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cpla03000
]
122553458 (hif1aa)
Transcription factors [BR:
cpla03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
122553458 (hif1aa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_3
PAS_11
HIF-1a_CTAD
HIF-1
PAS
PAS_9
PAS_4
HLH
Motif
Other DBs
NCBI-GeneID:
122553458
NCBI-ProteinID:
XP_043553166
LinkDB
All DBs
Position
10:complement(27834819..27896296)
Genome browser
AA seq
853 aa
AA seq
DB search
MCRDLSVVGIGLHKDEWVMSVFTWNWSGASGGIYESLCLFVRILISGSSERRKEKSRDAA
RFRRGKESEVFYELARELPLPHSVTSHLDKASIMRLTISYLRMRKLLNAGDMEVEADLEE
QLNSFYLKALEGFVMVLTQDGDMIYMSENVNKCMGLTQFELIGHSVFDFTHPCDHEEMRE
MLSHRQGLLKKGKDQNTERNFFLRMKCTLTSRGRTVNIKSATWKVLHCTGHIRVYKSSNE
QTHCGYKEPPMTCLILICEPIPHPSNIEVPLDSKTFLSRHSLDMKFSYCDERITELMGYQ
PEELLGRSVYEFYHALDSDHLTKTHHDLFTKGQATTGQYRMLGKEGGYVWVETQATVIYN
SKNSQPQCIVCVNYVLSGLVEKEVILSLDQIECVPVEKPEEPSKHPVSSTNEETNNLFDK
LKEEPEALTQLAPAAGDTVVSLDFSPSEMQQFNEVPLYNDVMLPSSTNQKTVDIALSPLP
PSDAKKPLCSSTDPALNLESIIKLETNQESMEFSFAIPQMNEQSNSSSCPCTSQNSPQPS
SPSDYCFNVDTDISNDFKLDIVEKLFAIDPEAKHPFSVQDIDNLDLEMLAPYIPMDDDFQ
LRSLDQLSPLSDCQTTPTSTPNVNAMIDIFSEAGTSVNGTPNKYISVLKNTGKNDKSSAA
TKPLSTPHTIERDNGSSSLQDKKSNRTTSPVRTGIQKGLLTQQTDISRPQSSLSPVKALL
AYSKRSAIGEAPNEELSPQLLILHNSPRKRKLENAASLFQAVGIGLLFQSDTDPPVSTSQ
TWKRAKGLEDSNSEQKTLVLVPTDIVSRLLTHSAESSSLPTLTNYDCEVNAPIQGNRTLL
QGEEVLRALDQIN
NT seq
2562 nt
NT seq
+upstream
nt +downstream
nt
atgtgtcgggatttgtctgttgtcgggatagggctccataaggacgagtgggtgatgagt
gtctttacctggaactggtctggagcttcaggaggcatttacgagagtctctgcttattt
gttcggattttaatcagtggtagttccgagagaagaaaggagaaatctcgtgatgctgcc
agattccgaagaggcaaagagtcggaagtcttttatgagctggctcgtgaactccctctt
cctcatagtgtcacttctcatctagataaagcctctattatgaggctgactatcagttac
ctacgcatgaggaaattgctcaatgctggagatatggaggtggaagctgacctggaggaa
caactaaacagcttttacttgaaggccctagaaggatttgtcatggtgttgacacaggat
ggggacatgatctacatgtctgagaatgtaaacaagtgcatgggactcacccagtttgag
ctgattggacacagtgtttttgatttcacccatccttgcgatcatgaagagatgcgtgaa
atgctttctcatagacaaggacttctgaagaaggggaaggatcagaacactgagcgcaat
ttcttcttaaggatgaagtgtactttaacaagccgaggacgcactgttaatatcaagtct
gcaacatggaaggtcctacattgcacaggacatattagagtatacaaatccagtaatgag
cagacccattgtggttacaaagagccacccatgacctgtctgattttgatctgtgaacct
attccacacccctccaacatagaggtaccactggatagcaagacatttctgagtcgtcat
agcctggatatgaagttttcttattgtgatgagagaataactgaattaatgggataccag
ccagaagaattgttgggccgctctgtctatgaattttatcatgcattggattcagaccat
ctgaccaaaacccatcatgacttatttactaaaggtcaggccacaactggtcagtacagg
atgctgggcaaagaaggtggctatgtttgggtggagacacaggccactgtgatctacaac
agcaaaaactcccagcctcagtgcatagtctgtgtgaactatgttttgagtggtttagtt
gaaaaagaagtgattctttcactggatcagattgaatgtgtacctgtcgagaaacctgag
gaacctagtaagcatcctgtttcatccacaaatgaagagaccaataacctttttgacaaa
ctgaaagaggaaccagaggctttaactcaacttgcaccagctgctggtgatacagttgtc
tcactggatttcagcccctcagaaatgcagcagtttaatgaggtcccactctacaatgat
gttatgttgccctcctccacaaaccagaagactgtagacatagcactgtcacctctgcct
ccatctgatgcaaaaaagccactatgcagtagcacagacccagccttgaatttggaatcc
atcatcaagcttgaaacaaatcaagagtcaatggaattttcatttgccattccacaaatg
aatgagcagtcaaacagctcttcctgtccttgcaccagtcagaattcaccgcaaccaagc
agcccttcagattactgttttaatgtcgacacagacatttccaatgatttcaaactggat
atagtggaaaagcttttcgcaattgacccagaggccaaacacccattctctgttcaggac
attgataacttggatctggagatgttggctccttacatcccaatggatgatgactttcag
cttcgatcactggatcaactttcaccactttctgattgtcaaaccacccctaccagtaca
ccaaacgtgaatgcaatgattgacatcttctcagaggctgggacatctgttaacggcact
cccaacaaatacatctcagttttaaaaaacacagggaaaaatgataagtcttcagctgca
acaaaacctttgtcaaccccgcacacgattgaaagggataatggctcaagttcattacaa
gataagaaaagcaacagaacaacttcacctgtccgaactggaatccaaaaaggactgctc
actcagcagacagatatttcacgtccacaaagttccttgtctcctgtgaaggcattgctt
gcttacagcaaaagatctgcaataggagaagctccaaatgaagagctgagcccgcaatta
ctgattttgcacaactcaccgaggaaacgcaagctggaaaacgcagcctcccttttccaa
gcagttggaattggattattattccaaagtgacactgaccctccagtgagtacatcacaa
acatggaaacgtgcaaagggattggaagacagtaacagtgaacagaagacactcgtgttg
gtaccaactgatatagtgtcaaggcttctcactcactcagcagagagcagtagcttgcca
acactcaccaattacgactgtgaagtgaatgcacctatccaaggcaacagaaccttgctt
cagggtgaagaagttctcagagcattggatcaaatcaactaa
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