Chiloscyllium plagiosum (whitespotted bambooshark): 122553485
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Entry
122553485 CDS
T08871
Symbol
prpf39
Name
(RefSeq) pre-mRNA-processing factor 39 isoform X1
KO
K13217
pre-mRNA-processing factor 39
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cpla03041
]
122553485 (prpf39)
Spliceosome [BR:
cpla03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
122553485 (prpf39)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
TPR_14
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
TPR_16
Mad3_BUB1_I
TPR_15
SlyX
TPR_MalT
Motif
Other DBs
NCBI-GeneID:
122553485
NCBI-ProteinID:
XP_043553235
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All DBs
Position
10:31198779..31287253
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AA seq
729 aa
AA seq
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MLAIFNSSTTNSRIQGRSKDYDSNQTLPPQNDGLKSADECDFHKSISSTADSLSHELLNP
NMESADEAINLKSRGVISEDEVDQTTSLKPFTDLSEISVAQVESPEGSASMDTESQPENS
PPEGTVEEIENIELNDSGIPFPTEYEKFWKVVEDNPQDFTGWTYLLQYVEQENHILAARK
AFDHFLSHYPYCYGYWKKYADLERRHHNVKRAEEVYRRGLQAIPLSVDLWLHYINFLKET
LDSNCPEIDDQIKSVFEHAVLAAGTDFRSDRLWETYINWENDRGNLEEVTTIYDRILGIP
TQLYSHHFQRFKDHVQNHLPKDIISSEDFIKLRQELASTNEHFDNVTPGNDLTAGIDIND
PAQIVSEIENMRHRIIEVRQEIYNHNENEVSRRWAFEEGIKRPYFHVKPLEKIQLKNWKD
YLDFEIENGTLERVVVLFERCLVACALYEDFWIKYAKYMENHSSEAVRHVYSRACTVHLS
KKPMVHLLWAAFEEQQGNINEARRILKMLEESVPGLAMVRLRRVSLERRHGNMDEAEFLL
QDAIKNSKTPNEASFYAVKLARLLFKVEKSLPKARKVLLEAIDFDKESTKLYLNLLELEY
NSDLKLNEENILNAFDKAISSSMAIETRIAFSQRKVEFLEDFGSDVKRLMVAYDHHQQLL
KEQESSKRKAENGSEEPEEKKQRSDATLASAQLMSGDLQANQSAYNYNAWYQYNYAAPWN
YGQYYPPPT
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atgcttgcaattttcaattcctccaccaccaactccagaatccagggaagatccaaagat
tatgactctaatcagacactgccaccacagaatgatggacttaagtctgcagatgaatgt
gattttcataaaagtatttcgtctactgctgattccctttcacatgagctgctcaatcca
aacatggagtctgctgatgaagccatcaatttgaaatcaagaggagtgattagtgaggat
gaagttgatcagacaaccagtttgaagccttttacagatttgtcagaaatatctgtggct
caagttgaatctcctgaaggatccgcatcaatggacactgaatctcaacctgagaattcc
ccacctgaaggaacagtagaagagatagaaaatatagaactgaatgattcagggatcccc
tttcctacagagtatgaaaagttttggaaagtggttgaagacaatccccaggacttcact
ggttggacatacttgttgcaatatgtggaacaagagaatcatatccttgcagccagaaaa
gctttcgatcacttcttgtcccactatccatactgttatggctattggaaaaaatatgct
gatcttgagcggcgacatcacaatgtgaaacgggcagaagaggtataccgacgaggtctt
caagcaataccacttagcgttgatctttggcttcactatatcaatttcttaaaagagacc
ttggacagcaactgtccagagattgatgaccaaataaaaagtgtatttgaacatgctgtg
ttagctgcagggactgactttcgctcagacagactttgggaaacttacatcaactgggaa
aatgaccggggaaatctggaagaagtgactacaatttatgatcggattcttggtattcca
acgcagctttacagtcatcacttccaaaggttcaaagatcatgttcagaatcacttgcct
aaagatataatctcttcagaggattttattaaactacgtcaagagctggcatccacaaat
gaacattttgataatgttactccaggaaatgatctaacagctggaattgatataaatgat
cctgctcagattgtctctgaaatagaaaatatgcgtcatagaataattgaagttcgtcag
gaaatatataatcataatgagaatgaagttagcagacgatgggcttttgaagaagggatt
aaacggccttactttcatgtaaaaccattggagaaaatacagctaaaaaactggaaagat
tatcttgactttgagatagaaaatggaactcttgaacgtgtggtggttttgtttgagagg
tgtcttgttgcttgtgccctttatgaagacttctggataaagtatgctaaatacatggaa
aaccacagtagtgaagctgtgagacatgtctacagcagagcatgtacagtgcatctatca
aagaaacccatggtacatttactttgggcagcttttgaggagcagcaaggaaacattaat
gaagctagaagaatcttgaaaatgctagaagaatctgtaccagggttagctatggtccgc
ttgagacgagtaagcttagaacgtcgccatgggaatatggatgaagcagaatttctgcta
caggatgcaattaaaaacagcaaaacacccaacgaagcatctttctatgctgtgaagttg
gctcgtcttttattcaaagtagagaaaagtcttcctaaggccagaaaggtcctattggaa
gcaatagactttgataaggaaagtaccaaactgtatctaaatcttttggaacttgaatac
aattcagatctcaaactgaatgaggaaaacattctgaatgcttttgataaagcaataagt
agctcaatggctatagaaacgagaatagccttctctcagcgaaaagttgagtttttggaa
gactttggctctgatgtaaaaagactcatggtggcttatgatcatcatcaacagctttta
aaagagcaagagtcatctaaaagaaaggcagaaaatgggtcagaagagccagaggagaaa
aagcaaaggagtgatgcaacattagcatctgcccagctgatgagtggggacttacaggct
aatcagtctgcatataattacaatgcttggtatcagtacaattatgcagcaccatggaac
tatgggcagtattacccaccacctacataa
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