Chiloscyllium plagiosum (whitespotted bambooshark): 122553663
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Entry
122553663 CDS
T08871
Symbol
pnn
Name
(RefSeq) pinin isoform X1
KO
K13114
pinin
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Pathway
cpla03013
Nucleocytoplasmic transport
cpla03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
122553663 (pnn)
03015 mRNA surveillance pathway
122553663 (pnn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpla03019
]
122553663 (pnn)
03041 Spliceosome [BR:
cpla03041
]
122553663 (pnn)
Messenger RNA biogenesis [BR:
cpla03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
122553663 (pnn)
Spliceosome [BR:
cpla03041
]
Complex C
Other components
EJC/TREX
122553663 (pnn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pinin_SDK_N
Pinin_SDK_memA
Motif
Other DBs
NCBI-GeneID:
122553663
NCBI-ProteinID:
XP_043553744
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All DBs
Position
10:56293156..56316075
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AA seq
649 aa
AA seq
DB search
MAVAVRSLQDQLEKAKESLKNVDENIRKLTGRDPNDLRPGQARRLSIAGPGGGRGRGLGL
LRRGLSDSGGGPPAKQRDLDGALSRLGDRRSRRESRQDSDAEDDEDTKKPALQSSVVATS
KERTRRDLIQDQTMDEKGKERNRRMFGLLMGTLQKFKQESNVATERIAARCPRRHQKRRQ
EIEQKLEVQAEEERKQVENERRELFEERRAKQTELRLLEQKVELAQLQDVWNEHNLKIIK
YIRTKTKPHLFYIPGKHCPATQKLLDESQRKMNGIFEHRRLEFADQINRMEVRPRRQSLK
EKEQREVQKEEQQNEEQEGKVAHHEEVEDLGNQNNDVEMEAAEEEVEVVAVKSVEKQQDK
EQEVEAEEEEVEEGENNSQPESMPVDDKEVSQNVENDQDMVEEVDECREERVEEVSKEPE
PVPEPEPELEPEPEPKPVPELKYKLESEPKPEPELECSVGNEPAQSPVNTQPVDLQVEPV
RVSPRKSTSRSKSSSRSKSRGREKTKSKSRSRSSSSTSSSSSSSTSSSGSSSSSGSSSRS
SSSTSSSSGSSSRDSSSSTSSSSESRSRSRSRGHSRDRKRRRSSDRKRRVTSNADKDRKS
SKPSSKDLKGSREKGSRLDRKRSITESHSGKRSSRTERDHKLDRKDKKH
NT seq
1950 nt
NT seq
+upstream
nt +downstream
nt
atggcggtggcggtgagaagtttgcaggatcaactggagaaagcgaaggaaagtttgaag
aatgtggacgagaacattcggaaactgactggccgagacccgaatgacctcaggcccggc
caagctaggcggctatccatcgcaggtcctggtggaggtaggggacgtggccttggatta
ctgagacgtggactctctgacagcggaggaggtcccccagctaaacagagagatttagat
ggggcactcagcaggctgggagatcgtcgatctaggagagagtcacgtcaagacagcgac
gcagaggatgatgaagatacaaaaaaaccagcgttgcagtcttctgttgttgctacctcc
aaagaaagaacacgccgagaccttattcaagatcaaacaatggatgaaaagggcaaagaa
aggaatcggcggatgtttggcctgttgatgggtacactgcaaaaattcaaacaggaatct
aatgttgcaactgagaggattgcagctcgttgtccaaggcgacatcaaaaaagacgtcag
gaaatagagcagaaacttgaagtgcaagctgaagaagaacgtaaacaagtagaaaatgaa
aggagagaattatttgaggagcgtcgtgctaaacaaactgagctaagacttctagaacaa
aaagtggaactggcccagttgcaagatgtatggaatgaacataatttaaaaataatcaag
tacatcagaaccaagacaaagcctcatttattttatatacctggtaaacattgtccagct
actcaaaaacttttggatgaatcccaaaggaagatgaatggtatttttgaacacaggcgt
ctggagtttgcagatcaaattaacagaatggaagttagacctagacgtcagtcactgaag
gaaaaagaacagcgagaggtgcagaaggaagagcaacaaaacgaggaacaggagggtaag
gtggctcaccatgaagaggtggaggatttgggtaaccagaataatgatgtagaaatggag
gcagcagaagaggaagttgaagtagttgcagttaaaagtgtagagaaacagcaggacaag
gagcaagaagtggaggctgaggaggaggaggtagaggagggggaaaacaacagccagcca
gagagtatgcctgttgatgataaggaagtaagccaaaatgtagagaatgatcaggatatg
gtggaggaagtagatgagtgtagggaggagagagtagaagaggtttctaaggaacctgag
cctgtgcctgagccagaacctgagttggagccagaacctgaacccaagccagtacctgag
ttgaaatacaaactggaatccgaacccaagcctgaacctgagcttgaatgttcggttggg
aatgagccagcacaaagtcctgtaaacactcagccagtggatttacaagtggaaccagtt
agggtgtcaccaaggaaaagcacaagtaggagcaagagtagtagcaggagtaaaagcaga
ggtcgtgagaagaccaagagtaaaagtcgcagtcggagtagcagtagcaccagctcgagt
agtagttcaagtaccagtagcagtggcagtagctcgagcagtggtagcagcagtagaagc
agttccagcactagcagtagcagtggcagtagtagcagagatagcagcagtagcactagc
agcagtagtgagagtcgaagtagaagtcgtagtcggggtcacagcagggacagaaagcgg
aggaggagctcagatcgaaagcgtagagttacttcaaatgcagacaaagatcgtaagtca
tcaaaacccagtagcaaagacttaaaaggatccagggaaaaagggtcacggttagatagg
aagagatctataacagaaagtcattcaggcaaaagatcttcacggactgaaagagatcat
aaattggacaggaaagacaaaaaacactaa
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