Chiloscyllium plagiosum (whitespotted bambooshark): 122554101
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Entry
122554101 CDS
T08871
Name
(RefSeq) collagen alpha-1(XXIV) chain isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Pathway
cpla04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
122554101
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cpla00536
]
122554101
Glycosaminoglycan binding proteins [BR:
cpla00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
122554101
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_3
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
122554101
NCBI-ProteinID:
XP_043554510
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All DBs
Position
11:2530417..2991919
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AA seq
1732 aa
AA seq
DB search
MHLGAQRTRRGFISAAGKPKSLLFLVTICLTAGIAPTHIQGVDILQKLGLTDNGTRSSSG
SPSQQPSLLLPRGITATENGIILSSDAHIEAAVTSIMPLDTSNDFTILVSLCSHRVNNAF
LVSIRNKNRLQFGVQVLPRKLVVYVAEKQSVYFAYNAHNGQWHSFAISIKGKTATFSSDC
GEKLISKELLVKPQKFVSGSKFTLGRMNWNAVPFEGALCQLDIYPDAQALLNYCNYVKKQ
CRLADTYRSLSPSLSTTSPEVTNSSLGDTRSSLSEEMQGSSTPTSTHTTSTHGQNITDED
EYLGHSLDGVVETNTQRNLEESKILTQLPPTSTPHFNDRTRSHSWNDSRLDPDLVQVLLD
QTFNSSVRKFKELSSREGAESKADQSENVTENGNAENSKISDEDFSPLTSLLKQHTIKES
LRNVNQPEVTKEISDQLLEIQMINATLYRTSTDTSSLNQNSLWDENGYSPVDSDHNMENS
QEIDIENYDYDYEDFLDYLDYEGLPGPKGDPGPPGPPGPPGATGPPGKRGARGLPGQHGN
PGLPGLPGPKGPKGEPGLFPIKAPSGEQGEPGPIGPVGPPGPSGQKGSKGYPGALGPPGE
RGPPGLAGNPGVSGYPGRQGLVGPKGKPGPKGRRGFIGPPGMVGPPGPEGKKGIAGPRGK
KGPKGRPGYPGAIGARGPPGSDGNLGLLGGIGQPGFPGLTGDVGPSGLIGLPGIPGPQGL
MGSAGPPGLKGDKGDHGVLGAPGERGYPGDRGATGLPGPPGMRGKSGPQGKVGDPGPQGL
PGPPGPEGFPGDIGLPGPNGPQGTKGAPGDRGPLGPQGAKGQQGDEGPLGPPGSHGPLGR
PGRKGYPGVLGLDGIKGEQGDLGNIGKIGEQGPVGLPGPRGPTGIVGEKGDRGEPGPLGP
PGEKGSMGYMGPPGLPGPVGEQGQRGLPGRRGSPGSPGAKGRRGPRGPDGSPGEPGPQGN
KGERGDLGKKGEPGVIGKAGNPGERGAQGPLGLTGPPGSTGEMGPPGKPGPRGQPGEVGT
VGGIGPEGPPGAMGDPGHPGEPGFKGELGPAGNTGEPGQTGLRGEPGPVGEDGIQGKDGI
KGELGYPGLKGEMGEKGDTGARGVAGPVGPSGINGMPGPEGKRGKPGQRGRSGKKGEKGH
RAPPGEQGDRGEQGPRGEAGPKGVRGSRGSMGPPGLMGPIGEPGLVGYPGHQGPSGPQGP
PGPKGEKGYPGDDSAEIGLPGPLGEPGPVGPRGDSGEPGDEGFKGYAGLPGLRGAAGQQG
LPGDSGDPGEQGLKGEKGKQGQKGAKGSPGEPGKPGLSGITGPPGKRGAEGQPGLRGKPG
NVGKTGIPGNPGRPGDLGDLGMVGLAGAPGPRGAPGEPGLVGDRGRRGPKGEKGLLGQPG
LQGNQRGRAGVQGDQGAFGEPGPKGRKGDGGDRGLMGFPGFQGPKGPVGDIGYKGIQGPK
GPMGLFGNTGPFGPTGIIGPAGKPGPKGVKGARGEMGPEGPRGQPGPPGPPGSPGPLRHS
DINTAIRALIASSEALQFESYQNTEIPHMEQGMEIFKTLHYLSSLMQNIKNPLGTKEHPV
RVCRDLLNCESQLSNDKYWIDPNLGCSSDTIEVFCNFNTGQTCLHPVTTSKLDFGIGKVQ
MNFLHLLSSEATQTITIHCLNFPVWKNTTNKDPYANSIHFRGWNGQIFKPNTVFQPKVIR
DGCKIQDGTWRQTQFVFDTQFVSQLPIVEIHELPHVTSARQYRVEIGPVCFL
NT seq
5199 nt
NT seq
+upstream
nt +downstream
nt
atgcatttaggagcccaaaggacacgccgtggattcatctctgccgccggcaaaccgaaa
tccctccttttcttggtaacaatatgtttgacggctggaattgcaccaacccacatccaa
ggtgtagacattctccaaaaacttggtcttacagacaatggaacacgctcttcatcagga
tcaccttcccaacagccatcgctcttgctacctcggggaatcacagccacagagaatggc
attatcctgtcaagtgacgcacacattgaagctgcggtcacaagcataatgccattagac
accagcaatgacttcactatacttgttagtctctgctctcatcgagtcaacaacgctttc
ctcgttagtattagaaataagaacagactgcagtttggtgtgcaggttttaccaagaaaa
ttagttgtgtatgttgctgagaagcaatctgtatattttgcatataatgctcacaatggg
caatggcattcatttgccatttcaattaaaggcaaaactgctacattttcttccgactgt
ggggagaagctcatcagtaaggagctgctcgtcaaaccacagaaatttgtttccggtagc
aagttcaccttaggaaggatgaactggaatgcagttccatttgaaggtgccttgtgccag
ctggatatttatcctgatgcacaagctttgttgaactattgcaattacgtgaagaagcaa
tgtcgcctggctgacacttaccgatccctgtcaccctcactttccactacgtctcccgaa
gttaccaactcaagcttgggagacacaaggtcttcactgagtgaagagatgcaaggaagt
tcaacaccaacatcaacccataccacaagtacacatggacaaaatattactgatgaggat
gaatatttaggccactcattagatggagttgttgaaaccaatactcaaaggaacttggaa
gaatcaaagattttgacccaattacctccaacgtcaacccctcatttcaatgatagaaca
agatcgcattcatggaatgactcaaggcttgaccctgaccttgtccaggttctccttgac
caaactttcaactcaagtgtgagaaaattcaaagaattgtccagcagggaaggagctgaa
tcgaaagcagaccaatctgaaaatgttacagagaacggaaatgcagagaattcaaagatt
tctgatgaagatttctcacccttgacttcgctgctgaaacaacacacaataaaagaaagc
cttagaaatgtaaaccagcctgaggtcacaaaggaaatttcagaccagcttctggaaata
cagatgatcaatgcaacactgtacagaacatcaacagacacctcttcactaaaccagaac
agtttatgggatgaaaacggttactcgcctgtggactcagatcacaacatggaaaattca
caagaaattgatattgaaaactacgattacgattatgaagacttcctcgattatttagat
tatgaaggcttacctgggccaaagggggatccaggaccacctggtcccccaggtccacct
ggtgcaacgggtcctcctgggaaacggggagcgaggggtttaccaggacaacatgggaac
ccaggcttaccaggactaccgggcccgaagggccccaaaggcgaacctggcttattcccc
attaaagcaccatctggcgaacagggggaaccaggtcccatcggtccagttggccctcct
ggtccatcaggtcaaaagggttccaaaggatatccaggggcacttggccctccaggggaa
cgtggtcctcccgggctggctggaaatcctggagtgagtggatacccaggcaggcagggt
ttagttgggcccaagggaaagcctggcccgaaaggtagacgggggtttatcggacctcct
gggatggtaggaccacctgggccagaaggtaaaaagggtatcgcgggaccccgtgggaaa
aagggccccaaggggagaccgggatatccaggtgctattggagcaagaggccctcctggt
tctgatggcaacctaggattgctcggaggaattggtcagcctggatttcctggtctcact
ggtgatgtaggtccttcaggattaatcggtctcccaggaatcccagggcctcagggtctg
atgggaagtgctggaccacctggattgaaaggtgataagggggatcatggtgtgttgggt
gcacctggggagcgaggatatcctggtgaccggggagcaactggtttgccgggaccacca
ggaatgagagggaaatcaggaccacagggtaaagttggagatcctggaccccaaggttta
ccaggtcctccaggaccagagggctttccaggggacattggcttaccaggccctaatgga
ccacaaggtacaaagggagctccaggtgacagaggaccattaggaccccagggagcaaag
ggacaacagggggacgaaggcccactgggacctccaggaagtcatggaccactgggaaga
cctggtcggaaaggataccccggagtgcttggattagacggaattaagggagagcaggga
gatttgggaaacattgggaagattggagaacagggtcctgttggcctgcccggtcctaga
ggccccacaggaatagttggcgagaagggagaccgtggtgaaccaggtcctctaggacct
cctggagagaaaggatccatgggctacatgggacctccaggtttacccggtcctgtcgga
gaacagggacagcgaggtctaccaggacggagaggatcaccagggtcaccaggtgccaaa
gggagaaggggaccaagagggccggatggatctccaggagaaccagggccccaaggtaac
aagggagaaagaggtgacctgggcaaaaaaggtgaacctggagttattggaaaagctggg
aatcctggagagcggggagcacagggtcccctgggattgacaggacctcctgggagcact
ggagagatgggacctcccggaaaaccagggcctcgaggccaacctggtgaagttggtact
gtcggagggatcggtccggagggacctccaggagcaatgggagatccggggcacccaggg
gaacctggattcaagggtgaattaggaccagctggaaacactggagaaccaggacaaacc
ggtttgaggggagagccaggaccagtgggagaagatggaatacaaggaaaagatgggatc
aagggtgaactgggttatccaggtctgaagggggagatgggggagaagggggacactgga
gctcgaggagttgctggtccagttggaccctctggaattaatggaatgccgggaccagaa
gggaaacggggaaaaccaggacagcgagggcgctcagggaaaaagggggagaagggacac
cgggcacctcctggggaacagggagatcgaggtgaacaaggaccacgaggagaggcagga
cccaaaggagtgaggggctcccgaggatcaatggggcctcctggtttaatgggaccaata
ggggagccaggtcttgttggatatccgggtcatcaagggccatcgggacctcaaggaccc
ccaggaccaaagggagagaagggttatccaggagatgacagtgctgagatcggactccct
gggcctctaggtgaaccaggtcctgtaggtcctcgtggagatagtggtgaacctggagat
gaagggtttaagggttacgcaggcttgccaggactgaggggagctgcaggacagcaagga
ttgccgggagattcaggtgatcctggagagcaagggcttaaaggagaaaaaggaaagcag
ggccaaaaaggggcgaaaggatcacctggagagccggggaaaccaggattatcaggaatc
acaggaccacctgggaaaagaggagcagagggacagccaggattgaggggaaagcctggg
aatgtcggaaagacaggaattcctggaaatcctgggcgacctggcgatctgggtgatctt
gggatggttggactggctggtgcccctggaccgaggggcgctcctggagaaccaggcctg
gtgggtgacagaggaagacggggaccaaagggtgagaaagggttactgggtcaacctgga
ctccaaggaaaccaaagaggacgcgctggagtgcagggcgatcagggagcctttggggag
cctggtccgaaaggacgaaagggagatggtggtgatcgaggtttgatgggatttcctggc
tttcaaggtccaaagggtccagttggagatattggctataaaggaattcaaggtccaaag
ggtccaatgggattgtttggaaacactggaccatttggacccactggaattatcggtcct
gctgggaaaccaggaccaaagggagtgaaaggtgccagaggggaaatgggacctgaagga
ccacgtgggcagcctggaccacctggtcctcctggatcacctggtccattgagacattcg
gatattaataccgcgatccgagccttgattgcatccagtgaagccctgcagtttgagagt
taccagaacactgaaatcccacacatggagcaaggaatggagatattcaaaactttacac
tatctcagcagtctgatgcaaaacatcaagaacccgctgggaaccaaggaacatcctgtt
cgggtttgccgggacttgctgaactgtgaaagtcaattatctaatgataaatactggatc
gaccccaacttgggctgctcttcggatacaatcgaagtattctgtaattttaacactggc
cagacgtgtttacaccctgtcactacatccaagctggattttggaattggaaaagtacag
atgaattttttacatttgctcagttctgaagccacacagaccattacaattcactgtctc
aacttcccagtttggaagaacacgaccaacaaggatccctacgctaattccatacacttc
agaggatggaatggccaaatatttaaaccaaatacagtatttcaacccaaagttataaga
gatgggtgcaagattcaagatgggacatggcgacagacacaatttgttttcgacactcag
tttgttagtcaacttccaatcgttgaaattcatgagctccctcatgtcacgtcagcgagg
cagtaccgggtagaaattggtccagtgtgctttctgtag
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