Chiloscyllium plagiosum (whitespotted bambooshark): 122554370
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Entry
122554370 CDS
T08871
Symbol
frem1b
Name
(RefSeq) FRAS1-related extracellular matrix protein 1b isoform X1
KO
K23380
FRAS1-related extracelluar matrix protein 1/2
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Pathway
cpla04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
122554370 (frem1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04091 Lectins [BR:
cpla04091
]
122554370 (frem1b)
Lectins [BR:
cpla04091
]
C-Type lectins
Lecticans
122554370 (frem1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin_3
Frem_N
Lectin_C
Calx-beta
UL45
Motif
Other DBs
NCBI-GeneID:
122554370
NCBI-ProteinID:
XP_043555211
LinkDB
All DBs
Position
11:48851691..49040131
Genome browser
AA seq
2152 aa
AA seq
DB search
MLLSLLTLIIFYIPHTEADGLVQLNGGIIVGRGQHTYVTDNDLQFNIPKTKDSCKVEVVL
NEPITQRVGKLTPQVFDCHFLPHEVKYTHNGCPLLKEDNVMLRIYGFTETQTFMETFLLN
IQITEPKSSIIKFGLVGLQVQEFYGISNPIDKNVVSFKYNANITCTVKMLSTEAFVPAHG
QLIVDDPRYHDQGQVRDDALKQNVRKVRQAKITCPNNKACLTGVKEVRFLKANCEEFLAM
ELKYQHLSPPSPDTDYIPIRVEVRDKRTRYLLQVENAWIQVNIKGAIPNQQPKAAFMSMY
ILEVDQFILTPLSVAAIDANDDETPKDRLIFNITNPPIEGYLTHLDDHTKSITSFSWQDL
YEMKIAYQPPNISHTERRNYEVDFKVIDTFFEVSATIMVHFSIRTAETNAPRVSWNMGLD
LLEGQSRPITWENFQIVDNDNINDVRLIAVEGLQHGRLTVRGGKGFMCTIEDIKEGVVHY
HHDDSDTTKDYIVFRIFDGKHTTRHKFPINILPKDDSPPFLINNLAFELAEGASILIENH
MLLSSDLDSSDDYILYKIIVPPKAGEIVKKTSSDRLGHPVTSFLQRDLFHGLIYYRHSGG
EIFEDLFEFILWDSHEPPNLSDPQITMIRIMPVKDQLPKEVDGATRYLVTKETEINHITK
DHLHFTDTESPANELMYIISKPCFFPTNQRMYDAGKIIFTDSTKNMKKDPSVPMMRSFTQ
HAVNHMKVAYMPPLEDIGPHPLLVQFIFSVKDQQGGIVTGIVFNITIIPVDNQPPEIFTN
EIKAEEGSSCMITADNLMVTDKDTIDEDLRIQLKQKPQHGDIELQGYIMQEGDMFTLDDL
KSFQVRYKHDDSETLHDLVVFTATDGFNTADEVLKVKVIPINDEPPELQKHLKSGLQCPE
GERVTITSEYLYATDTDSNDTKLTYMIARSPSYGVIKRNDVTVDKFSQLDIIQGLISYWH
TGGEIGYNPCIDTVTVIVSDAEASTVDSCCYDGPLPPPVPLHGSLPFYDLNVTVMPVNNQ
PPTIQVGGMFTVDEGSQAGLALEFLSATDEDTIAEKLIFVLESLPLFGYLENTLPSPGYE
KSNAGINIASFSLQHLRAGYINYVQCRHNQMEPTADHFMVSVSDAVHKSIAVPFYVIINP
INDETPDLQLGNITIMEGDICVIGPGVLNAVDLDIPQDTMILSVIRPPAHGVLLNGIYGN
DVAKYRQMNAEVLQNDLRVHSFSMDELKQGMKLMYMHDDTETLKDSFTIQLTDGKHAVQE
TVHVSIILVNDEKPVILKNTGLQVEVGENKVISSVALEAEDKDTPRFKLYYVINTVPTFG
QLQFKTELEWIHLYPGMNYSQEDIDLNRVWYLHTTIVGLKGHDNFRFHVTDGDNSSPSQS
FHILLKHMNKGGIVVLTKPVTLKEGDRVTLTTDVLKATDGTGKPEELLYAISVPPAHGQI
EYINYPGVAISSFSQLEVAAQKVCYVHDNSREASTDGFRFFISNGITVKNSSMEFNIERT
DRIMPTLVNNKGLQLPDGAKLVISPDNLQLSDPDTPLMNLTYIIIQPPQHGNIYLKENIL
SQPHFTQLNVNNLDISYKHRAGSSELDHFTFIASDGTNHGFLVNGQMTKEPVIFRLQVKH
VDKASPYILINQSPTTVHKLKDGRFAIYITAQNLKSSDVDSKHEELIYTILRPPFYGYLE
STTTGGYIQGSFTQKEVDRRTIRYIISPSIELTSDSFEFKVSDTAGNSNAPEIMELKWSR
IEMFASCYTVCENIGTLSIKVTRKGYSADPSYVGITVQGLSATVGRDFTHSSASLIQFDP
GISIKVWNIFIRDDGLEENNEKLKVQLKTPTNAILGQKDVSLVEIVDLRGGRCDHTDLKT
RGDDYNGHMDSGLSELTKTSANSPTDKKEGIFNERERLFTDPDLHKNRHTHPPRGDVPHM
DHFLDYYGTRIRDDVSPVTPSTQLQAFGSSGVIPPSSIQRENGEIVWRYHGMVPIRIEEG
KLPDFSQTREYQAPDLLQKDLPSKAENIQSISNNNQANQQMECPSGWTQHKKHCYILNPE
RNATWQGAEMACRQMFNANLVSVHSRTELKWLWKFARRQSFWIGLVAETGSGKWRWTNGR
PVTFTNWKKNKPSIRGNIQLRCTLVQHGGKWVTRQCNEKKDRYICCTSVSRP
NT seq
6459 nt
NT seq
+upstream
nt +downstream
nt
atgcttctaagtttgttaactctgataattttctacatcccacacactgaggcagatgga
cttgttcaactgaatggagggattatagttggtagggggcaacatacatacgtgacagac
aatgacctgcagttcaacattcccaaaaccaaagactcctgcaaggtcgaggttgtactg
aatgaacctataacacaacgagttggaaaattaactcctcaggtttttgactgtcatttc
ctccctcatgaagtgaaatatacccataatggctgccctctgttaaaggaagataacgtg
atgctaaggatctatggattcacagaaactcagacgtttatggaaacatttctattgaac
atacaaattacagaaccaaaatccagtataatcaagtttggattggttggccttcaggtt
caagagttttacgggatatcaaatcctattgacaaaaatgttgtgtctttcaaatacaac
gcaaacataacttgtacggtaaaaatgttatcaacagaggcctttgttccagcccatggt
cagcttattgttgatgatccgaggtatcatgaccaaggacaagtacgagatgatgcgctg
aagcagaacgttagaaaagtaagacaggctaaaattacatgtcccaacaacaaggcttgc
ctaactggtgttaaggaagtgcgattcttaaaggctaattgtgaagagttcctagcaatg
gagctgaaatatcaacacctcagtccaccctctcctgatactgactatattccaattaga
gttgaagtcagagataaaaggaccagatacctccttcaggtagaaaatgcttggattcaa
gttaacattaaaggtgcaattccaaatcagcaacccaaagccgccttcatgtcaatgtac
atcctggaggttgatcaattcattctgacaccactgagcgttgcagctattgatgcaaat
gatgatgaaacaccaaaggacagactgattttcaacatcaccaaccctcctatagaagga
tacttaactcacctggatgaccataccaaatccatcacatctttcagctggcaggattta
tatgaaatgaaaatagcatatcaacctcctaacattagtcatactgaaaggaggaattat
gaggttgattttaaagtaatagacactttttttgaagtcagtgctactatcatggttcat
ttttcaataagaacagcagagacaaatgcaccaagggtttcttggaacatgggtctggac
ttactggaaggtcaatctcgaccaattacttgggaaaattttcagatcgtagacaatgat
aatattaatgatgtacgtttaatagcagtggaaggactccagcatggacggctcacagta
agaggtggcaaaggattcatgtgcaccattgaggacattaaggaaggagttgtgcactat
caccatgatgatagtgatacaaccaaagattatattgtattccgaatcttcgatggcaaa
cacactactagacacaagtttccaattaacattttgcccaaagatgacagccctcccttc
ttaattaacaaccttgcttttgaactagcagaaggagcatctatattaatagaaaaccat
atgctactgtcttctgatttggattcgagtgatgattacatattgtacaagattatagtt
ccaccgaaagctggagagattgtgaaaaaaacttcatcagatcgactgggtcatcctgtg
actagttttctacagagggatctgttccatggtctgatttattatcgtcattctgggggc
gaaatttttgaggatttgtttgaatttattctgtgggatagccatgagcctccaaacctt
tcagaccctcagataacaatgatccgtataatgccagtgaaggaccagctacctaaagaa
gttgatggtgctacacgctatttggtaacaaaagaaaccgaaattaaccacatcacaaag
gatcatctccatttcacagacacagaatccccagcgaatgaattgatgtacataatcagt
aaaccttgtttttttccaacaaaccagagaatgtacgatgcaggcaagataattttcaca
gacagcacaaagaatatgaaaaaggatccttccgtccccatgatgagatcatttacacag
catgcggtgaaccacatgaaagtagcgtacatgcctcctctcgaggatatcgggcctcat
ccgttattggtgcagttcatattttctgtcaaggatcagcaaggaggcatcgtgactgga
attgtctttaacatcaccatcattcctgtggacaaccaaccacctgagattttcactaat
gaaataaaagctgaggaaggttcaagctgcatgatcactgcagataacctgatggtgaca
gataaggatacgattgatgaggatctccgaattcagttgaaacaaaaaccacagcatgga
gatattgaactacaaggatacatcatgcaggaaggggatatgtttacacttgatgacctc
aaatcctttcaagtcaggtacaaacatgatgattcagaaacactgcatgatttagttgtg
tttacagctacagatggatttaacactgcagatgaggtgctgaaagtaaaggttatacca
ataaacgatgaacctccagagctacagaaacatttgaaatccggtctccaatgtcctgaa
ggagaaagggtcaccattacttctgaatatctttatgctacagatactgacagtaatgac
acgaagctgacatacatgatcgctcgctcaccgtcatatggagtgataaaaagaaatgac
gtcacagtcgacaaattctcacaactggatattatccaaggtttaatctcctattggcac
actggtggtgaaataggatacaatccttgcattgatactgtcacagtaattgtatctgat
gcagaagcaagcacagtggacagctgttgttatgatggacctctcccaccaccagtgcca
cttcatggctctctccctttctacgaccttaacgtcactgtaatgccagtcaataatcaa
cctcctacaattcaagttggaggtatgtttacagttgatgagggatcgcaagccggcttg
gcattagaatttctgtctgccacagatgaagacacaatcgcagagaaactaatctttgtg
ttggagagtttacccctgtttggatatctagaaaacactctcccatcaccagggtatgaa
aaaagcaatgctggaataaacatagcttccttcagtctgcagcacctcagggcaggctac
atcaactacgtccagtgcagacataaccagatggagcccacagctgaccactttatggta
tctgttagtgacgctgtacataaatctatagcagtgccattttatgtcatcatcaaccca
atcaacgatgaaactccagatttgcagctgggaaacatcacaataatggagggtgatata
tgtgtgattggccctggagtactgaatgcagtggatctggacatacctcaagatacaatg
attctctctgtgattagacctcctgctcatggagtccttctgaatggcatctatggaaat
gatgttgccaaatacaggcaaatgaatgctgaagttctacaaaatgatctgagggtacat
agctttagcatggatgaactcaaacaaggaatgaagcttatgtacatgcatgatgacaca
gaaaccttgaaggatagttttaccattcaattaacagatggcaagcatgcagtacaagag
acagtacacgtcagcattatattggtcaacgatgagaagccagttattttaaaaaacact
ggtttgcaagtggaagtgggggaaaacaaagttatttccagtgtggctttagaagctgaa
gacaaggacacaccacgattcaagctttactatgtcatcaatactgttcccacatttgga
cagcttcaattcaagactgaacttgaatggattcatttatatccaggcatgaactatagt
caagaagatatagacctgaatcgagtctggtatctacacacaactattgtggggttaaaa
ggtcatgacaattttcgctttcatgttacagatggggataactcctcaccttcacagtct
tttcatattttgctcaaacacatgaataaaggtggcattgttgtactcaccaaacctgta
actttaaaagagggtgacagggtcaccttgacgacagatgttctcaaggcaacagatggc
actggcaaacccgaagagctattgtacgccatctctgtgccacctgcacatggtcagatc
gagtacatcaattatcctggagtggccatttccagtttcagccagttggaagtagcagcc
cagaaggtttgctatgtccatgacaacagtcgtgaggccagcacggatggattcagattt
tttattagcaatgggataacagttaaaaacagctccatggagtttaacattgagcgaact
gaccgtatcatgcctactctagtcaataataaaggtcttcagttaccagatggagccaaa
ttggtcatctctcctgacaatcttcaactctcagatccagacactcccttgatgaaccta
acctacattattatccagcctcctcagcatggcaacatctacctgaaagaaaacattctt
tcccagccccatttcacacagttgaatgtgaataatttggacatttcctacaaacacaga
gcaggctcctctgagcttgaccattttacattcattgcttctgatggaaccaatcatggc
tttttagtcaatggccagatgacaaaggagcctgttatattcagattacaggtgaagcat
gttgacaaagcttctccctatattctcatcaatcaaagcccaactacagttcacaaactg
aaagatggacgttttgctatctacatcactgcccagaacttaaaatcctcagatgtggac
agcaaacatgaggagctgatctatacgattctccgtccacctttctatggatacttggaa
agtactactacaggtggatacattcaaggctcatttacccagaaagaggtggacagacgt
acaattcgctacatcatcagtccctccatagaactgacatctgacagctttgagttcaaa
gtatctgacactgcaggaaactctaatgcaccagaaataatggaactgaaatggtccagg
attgaaatgtttgcaagttgctatacagtctgtgagaacatcggaactctctccataaag
gttaccaggaaaggatacagtgctgatccctcttacgttggtataacggttcaggggtta
tcagctacagttggcagagactttacacatagctcagcgagtttaattcagtttgatcct
ggtatttccataaaggtgtggaatatttttatacgtgatgatggacttgaagagaataat
gaaaaattgaaggtgcagctgaagacaccaacgaatgccatccttgggcagaaggatgtc
tctttggtggaaattgtggatttgcgtggaggcagatgtgatcatactgatttgaaaaca
agaggagatgattataatggtcacatggacagtggtttaagtgaactcacaaagacatct
gccaactcacccactgataaaaaagaaggaatattcaatgagagagaaagattattcaca
gaccccgatctgcacaagaatcgtcatactcaccctccaaggggcgatgttcctcatatg
gaccattttttggactattatggaacacggatcagagatgatgtctctccagtgacaccc
agtacacaacttcaggcttttggaagcagcggagtgattcctccctcatcaattcagaga
gagaatggggagattgtgtggagataccatgggatggtgccaataagaattgaagaagga
aaattgcctgacttctctcaaaccagagaatatcaggcaccagacttgctccagaaagac
ctcccatcgaaagctgaaaacattcaatcaatcagcaacaacaaccaggcaaatcaacaa
atggaatgtccttcaggctggacccagcacaagaaacattgttatattttgaatcctgag
agaaatgcaacctggcaaggagctgaaatggcctgtagacaaatgtttaatgctaattta
gtcagtgtacattccagaacagaactgaaatggctttggaagtttgccagaagacagtca
ttttggattggtttagtagccgagactggctctggaaaatggagatggactaatggaaga
ccagtaacctttacaaactggaagaaaaataaaccttcaatacgaggaaatattcagctg
agatgtactcttgtccaacatggaggcaaatgggtgactagacagtgtaatgaaaaaaag
gataggtatatctgctgtacttctgtatcaagaccttaa
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