Chiloscyllium plagiosum (whitespotted bambooshark): 122554462
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Entry
122554462 CDS
T08871
Symbol
lamc1
Name
(RefSeq) laminin subunit gamma-1
KO
K05635
laminin, gamma 1
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Pathway
cpla04510
Focal adhesion
cpla04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
122554462 (lamc1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
122554462 (lamc1)
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Gene cluster
GFIT
Motif
Pfam:
Laminin_N
EGF_laminin
EGF_LMN_ATRN
Laminin_B
Alanine_zipper
Motif
Other DBs
NCBI-GeneID:
122554462
NCBI-ProteinID:
XP_043555464
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All DBs
Position
11:complement(62441724..62757299)
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AA seq
1618 aa
AA seq
DB search
MAPGDSGTRKKGVPSESKRFPCPGTMRWSLRLALLACLLLQCWAAMDECYDETSRAQRCM
PEFVNAAFNVTVVASNTCGSPPEEYCVQTGVTGVTKSCHICDSSDPRLHHDAVYLTDYNN
QADTTWWQSQTMLSGIQYPNSISLTLHLGKAFDITYVRLKFHTSRPESFVIYKRTNEDGP
WIPYQYYSGSCEKTYQKKNRGFIRTGEDEQQALCTDEFSDISPLTGGNVAFSTLEGRPSA
YNFDNSPVLQEWVTATDIKVTLNRLNTFGDEVFNDPKVLKSYYYAISDFAVGGRCKCHGH
ASECIKNEFNKLICNCKHNTMGVDCEHCQPFYNDRPWRRATAENPNECLPCNCHGKSAEC
YFDSELYRATGHGGHCRNCIENTDGPNCERCRDDFYRQGPEAQCLPCNCNPVGSVSTQCD
IYGRCSCKPGVLGDKCDHCQPGYHSLTEAGCRACACNPAGSTAECIVDTGRCMCKNNVEG
FNCERCKPGFFNLDPQNPHGCTACFCYGHSSVCSKAEGYNVEKITSSFDTGNDGWQAEQR
DGTEVLLQWSPVSRDTSVVSNDYFPVYYIAPAKMLGNQLMSYGQNFSFTFYVDKRDTRLS
AEDLVLEGAGLRVTVPLIAQGNQYPTESPQNYVFRLHEVTSYPWRPQLSSFEFQKLLHNL
TAIKIRGTYSENSAGHLDDVTLLTARPGSGSPADWVEQCTCPAAYRGQFCEQCALGYRRE
DPGRGAFSPCVPCSCNAHSDTCDPESGECYCRDNTAGSNCERCKDGYYGDPTVGSSEDCR
PCPCPTGSSCAMVPKTRDIVCTNCPKGTTGKRCELCDDGYYGDPLGSEGPVRPCKPCHCS
DNIDPNAVGNCNRLTGECLKCIHNTDGFYCDKCKDGFYGNALNPIPSDKCKACNCSRYGT
VDQQRNCNQVTGLCECLVHVVGRDCSQCEPGYYNLLSGQGCQRCDCNPIGSINGQCDARN
GQCECQPGVVGQQCDTCEPYHFGFGQDGCKPCDCDREGSRSLQCKEYGKCDCKEGFVGMH
CDQCEENYFYNRTRPGCQECPTCYRLVKDKVTEHRQKLKDLEDLIANLGTSQDTVSDKAF
EERLKEAERTIMNLLRDAENMRDVDKSLMDRLAEINNTLSTQWGRLQNIKDTVDNTEELA
EQSNNRIQDAEKVISNARTELEKAKEILDNVSIATPASSADPNNMTLLAEEARYLADRHK
NEADVIEQIAKNANDTSTEAYELLRKTFAEESEITNTVDDLNRKYDAAKNMSRELEKQAT
KVHSEAEEAGSKALQIYANLTSLPVVDTKGLENEAEKIKKDAADLDGLIDRKVKDYDDMR
DDLEAKETEVKSLLEKGKTEQQTADQLLARADAAKALAEDAAKKGKATLQEAQDILKNLQ
DFDKRVNDNKTAAEEALKKIPGIRRTIDEANAKTKQAEDALGNARIDASEAKTKAEDAKK
IAELLQEDAAKTKQDADDTFNDAMALEAEVSDMMNRLKEAEDELAGKKNEADQDMMMADM
ASQAAKEADEQARKAKKAVQGVLNTINKLLGELGQLDNVDVNRLGEIENTLKKAKGQMED
SDLERKLADLEKAEKEQANAIITYEQDIEDILKDIKNLEDIKQTLPPGCYNTQSLETP
NT seq
4857 nt
NT seq
+upstream
nt +downstream
nt
atggcgccgggagactctggaactcggaagaaaggtgtgccgagtgaatcgaagcgtttc
ccgtgtccgggcaccatgcgctggagcttgcggctcgctttgcttgcttgcctgctcctg
caatgctgggcagccatggatgaatgctacgatgaaacttcacgggctcagcgctgcatg
cccgagttcgtcaatgccgctttcaacgtgaccgtggtggccagcaacacttgtggctca
cccccagaagaatactgcgttcaaaccggggtgacaggggtcaccaagtcttgccacatt
tgcgactctagtgaccctcggctgcaccacgacgccgtttatctgaccgattacaataac
caagccgataccacttggtggcaaagtcagacgatgctttctgggatccagtaccctaat
tctatcagcctgactttgcacttggggaaagcatttgatattacatatgtaagactgaag
ttccatacgagtcggcctgagagttttgttatttataaacgaactaatgaagatgggcct
tggataccttaccagtattacagtggatcgtgtgagaaaacttaccagaaaaaaaatcgt
ggttttatccgaacaggagaagatgaacagcaggcactgtgcacagatgaatttagtgat
atatcgcccctcactggaggaaatgttgccttttctactttggaagggaggcccagtgct
tacaattttgacaatagccctgtgctgcaggaatgggttacagcaactgatatcaaagtg
accttgaataggttgaacactttcggagatgaggtttttaacgaccctaaggttctgaag
tcttactattatgccatttcggactttgcagttggtggaaggtgtaagtgtcatggccat
gccagcgaatgtataaagaatgaattcaataagctgatctgcaattgcaagcacaacaca
atgggagtggattgtgagcattgccagccattctacaatgaccgaccttggcgcagagct
acagcagaaaacccaaatgagtgtttgccttgcaattgccatggcaaatctgcagaatgt
tacttcgactctgagctctaccgagccactggacatggtgggcactgccgcaactgcatt
gagaatacagatggtcccaactgtgagaggtgtcgggatgatttctaccgtcagggccca
gaagcccaatgtctgccctgcaattgtaacccagtgggttcggtcagcacacagtgcgat
atttatggccggtgcagctgcaagccaggtgtgctgggagacaaatgtgaccattgccaa
cctggctaccactcactaactgaagcagggtgcagagcatgtgcctgtaaccctgctggc
agcacagcagaatgcattgtcgatacaggacgttgtatgtgtaagaataatgtcgaggga
ttcaactgtgagagatgcaagccaggatttttcaacttggacccccagaaccctcatggc
tgcacagcctgcttttgctatggtcattcatctgtttgtagcaaagctgagggctacaat
gtcgagaagatcacatcaagctttgatacaggcaatgatggatggcaggctgagcagcga
gacggtactgaggtcctgcttcagtggtccccagtgagccgtgacacctctgtggtctct
aacgattatttcccagtttactatattgctcctgcaaaaatgttggggaatcagctgatg
agctatggtcaaaacttctctttcactttctatgtggacaagagagacacacgtttatca
gccgaggatctagtactggaaggagcaggcctgagagtaaccgttccactgatagctcag
ggaaatcagtaccccacagagagcccgcagaactatgtcttcagacttcatgaagtaaca
agttatccgtggaggccacagctttcttcttttgaatttcagaagcttctccacaacttg
acagctatcaagattcgaggcacatacagtgagaatagtgccggacacttggacgatgta
actctgctcactgcacgtcctggctcaggatctcccgctgactgggtagaacaatgtacc
tgcccagctgcataccgggggcagttctgtgaacagtgtgcactgggctacaggagggag
gatcctggtcgtggagctttcagtccctgtgtgccttgcagctgcaatgcccatagtgat
acctgcgatcctgaaagtggtgaatgttactgcagagacaacacagcaggatcaaactgt
gagcggtgtaaggatggttactatggtgatcctacagttggtagctcagaggactgtcgt
ccgtgtccttgtccaactggttcaagctgtgctatggtgccaaaaaccagggatatagtg
tgtactaactgccctaaaggaactactggtaaaaggtgtgaactgtgtgatgatgggtac
tatggtgaccctttaggaagcgaggggcctgtgagaccatgtaaaccatgtcattgcagt
gacaacattgatccaaatgctgttgggaactgtaatcggctgaccggagagtgtttaaag
tgcatccacaacactgatggattctactgtgacaaatgtaaagatggattttatggaaat
gcattaaacccaattccatcggataaatgtaaagcttgtaactgttctcgatatggcacc
gtggatcagcaaaggaactgcaaccaagtcactggtctgtgcgagtgcttagttcatgtt
gtgggcagggactgtagtcagtgtgagccaggctactacaatcttcttagtggccagggc
tgtcagagatgtgactgtaatcccattggttccattaatggtcagtgcgatgcccggaat
ggacaatgtgaatgtcagcctggtgttgttggtcagcagtgtgatacgtgtgaaccatat
cattttggatttggccaggatggatgcaaaccctgtgattgtgaccgtgaaggctctcga
tctctgcagtgcaaggaatatggaaagtgtgactgtaaggaaggatttgtgggcatgcac
tgtgatcaatgcgaagaaaactatttctacaatcggacaagacctggctgccaggagtgt
ccaacgtgctacaggctggtgaaagataaggtaactgaacatagacagaagcttaaggac
ttggaagatttaattgcaaatcttggaacaagccaggacacagtgagtgacaaggctttt
gaagaaagactcaaagaagctgaaagaaccattatgaacttgctgagggatgctgaaaac
atgagagatgtagacaaaagtcttatggaccgtttggctgaaattaataacaccctgtcc
actcagtggggacgtcttcaaaatataaaggatacagtagataacaccgaggagttggct
gaacaatccaataatcgtatccaggatgcagagaaagtaatttcaaatgctcggacagag
cttgaaaaggccaaggaaatcttggacaatgtgtcaatagcaactccagcttccagtgct
gatccaaataacatgacacttctggcagaagaagctcgttaccttgccgataggcataaa
aatgaagccgatgtgatcgagcagatcgccaagaatgctaatgacacctcaactgaagct
tacgagttgctacgtaaaacattcgcagaagaaagtgaaatcaccaacacagttgatgat
ttaaacagaaagtatgatgcagcaaaaaatatgtccagagagctggaaaaacaagctacc
aaagtacacagtgaggcagaagaagctggtagcaaagcattacaaatctatgccaatctg
acgagtttgcctgttgtggacaccaagggtttagagaatgaagcagagaagattaaaaag
gatgcagcagatttggatggtttgattgacagaaaagtgaaggattacgatgatatgcgg
gatgacctggaagcaaaggaaactgaagtcaagagtcttttggaaaaggggaaaaccgaa
cagcagactgctgaccagttgctcgcccgtgcagatgctgctaaagcactggctgaagat
gctgccaagaagggaaaggctaccctgcaggaggctcaggatattctgaaaaacttgcaa
gattttgacaagagggtcaacgataacaagacagcagccgaagaagctttgaaaaagata
ccaggcatcaggaggaccattgatgaagccaatgcaaagacaaaacaggctgaagatgca
ctggggaatgcaagaatagatgcatctgaagccaaaacaaaggctgaagatgcaaagaaa
attgcagaattgttacaggaggatgctgctaagacaaaacaggatgctgatgacaccttt
aatgatgccatggccttggaggctgaagtcagtgacatgatgaatcgactgaaagaagca
gaggatgaacttgcagggaagaagaatgaagcagaccaagacatgatgatggcagatatg
gcttctcaagctgcaaaagaggcagatgagcaggcaagaaaggccaaaaaggctgtgcag
ggtgtgctaaataccatcaataagttgttgggagaactgggtcaacttgataatgtagat
gttaaccggcttggagaaattgagaacactctaaagaaagccaagggtcagatggaggat
agtgacttagaacggaagttggcagatctggaaaaggcagaaaaggagcaggctaatgcg
ataattacatatgaacaagacattgaagatattctgaaggacatcaaaaatctagaggac
atcaaacaaacattacctcctggctgttacaatacccagtcactggagaccccgtag
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