Chiloscyllium plagiosum (whitespotted bambooshark): 122554498
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Entry
122554498 CDS
T08871
Symbol
ndc1
Name
(RefSeq) nucleoporin NDC1 isoform X1
KO
K14315
nucleoporin NDC1
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Pathway
cpla03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
122554498 (ndc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpla03019
]
122554498 (ndc1)
Messenger RNA biogenesis [BR:
cpla03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
122554498 (ndc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ndc1_Nup
Motif
Other DBs
NCBI-GeneID:
122554498
NCBI-ProteinID:
XP_043555560
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All DBs
Position
11:66666052..66693937
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AA seq
682 aa
AA seq
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MEQPPGFWFIRKVFSWRAAASIAWSVLLLPVSTTVFILLSRLNVFHPIQWITDSLNHLNS
SYIIFAVLVLCGVVVTIGIFNTEFYTVEPSIPCSRIALVGNVFHPRRFLHSVVHAVMGML
VAWCAAVIAGGRYQLISVSCSSQGSSSSSSHMCLNEFHIFVLMEGAFIGYSYSLLYFVNN
FNYVSFPMLQQFKYPQFKGNLSLVIKYSAVQSLYFLRNYCILYYFLGYVPRAWISASTTL
QRDSAQHSLDTLTGLFDLPLLYTAWLSGTFLLVTWYITWLLFKIFITEAFQFPVQPSFGE
EADRCLPKVLTNNVSPCIKYLALQDLALLSQYSASRRQEVFSLSQPGGHPHNWIAISSEC
LALINDLTQKLADYQETIAANGRIKSYPIPVERHLPSTSGTSCLEEPDSYQPSLRSPLSA
RQRRGPQPSSLIKSSGTSFRSLLGFPCAPDPCSPLGSPAAVNRFSDVLDLGSPSFGSSPT
SHEMRKVPKLWTSASNSSEYLANTSEFCQAVQANNRTPEVTKHNAISEWMLQRQDQVKSF
LSKRGLVMYLFKKLPEASSQALFANSQAHIWALEGLSHLVAASFREDCYGVVQTTLSSIL
CAMLSLQEAVDKHFKLPHASSKPPRSTGTLVDSSYKTLRFALRASLKTAIYRITTTFGEH
LKAVHLSSEHRKRLLQFLEYKE
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atggagcagcccccgggcttttggttcatccgcaaggtgttcagctggcgagcagcagct
tcaattgcttggtctgtcttgctgctacctgtctccacaactgtttttatactgctgagc
agattgaacgttttccatcctatccaatggattacagattcgctgaatcatttgaatagt
tcctatataatctttgcagttctggtactttgtggagtcgtagtgacaattggtattttc
aatacagagttttatacagtagagccttctattccatgcagtcgtattgcacttgtggga
aatgtattccatccccgtcggtttctccattcagtggtacatgcagtaatggggatgctg
gtggcatggtgtgcagcagtaatagccgggggacgctatcagctgatcagtgtatcttgt
tcatctcagggcagctcatcatccagcagccacatgtgcctgaatgagtttcacattttc
gtactgatggaaggagcctttataggatatagttatagtcttctgtattttgttaacaac
ttcaattatgtgtcattccccatgttgcagcaattcaagtacccacagttcaaaggaaat
ctgtctttggttattaagtacagtgctgtgcagtctctgtattttctcaggaactactgc
atcctttactatttcctaggttatgtaccaagggcctggataagtgcctcaacaaccctt
caaagagatagtgcacagcattccctggataccctgactggattattcgacttgccactg
ctctacacagcctggttaagtggtacgtttcttttggtcacctggtacattacatggctg
ctgtttaaaatcttcattactgaggcattccagtttcctgtgcagccctcatttggagag
gaagctgatcggtgcctccctaaagtcctaacaaacaatgtttccccctgtataaagtat
ctagcattgcaagacttggccttactttcccaatattcagcttctcggagacaagaggtg
ttcagccttagccagccaggtggtcatcctcataattggatagccatatcaagtgaatgc
ttagccttgataaatgatttaacccaaaaactggcagattatcaagaaacaattgctgca
aacggtcgaattaaatcctatccgatccctgtggaacgacatctgccgagcacttcagga
acttcctgtcttgaagagcctgacagctaccagccttccttacggtcgccactctctgcc
cgtcaacgccggggccctcagccatcgtcattgattaagtcttcaggcacttcgttcaga
agcttgcttggcttcccttgtgcaccagatccctgtagtcctcttggttctcctgctgct
gttaaccgattcagtgacgtgttagacttgggctctcccagctttggctcttcaccaact
tctcatgaaatgaggaaggtgccaaaactatggacctcagcttctaactcctcagaatac
ctggcaaacacaagtgaattttgtcaagctgtccaagccaacaacagaactcctgaagtg
acaaaacacaatgccatttctgaatggatgcttcagaggcaagatcaggttaagtctttc
ttgtcgaagcgagggctggtaatgtatttatttaaaaagctcccggaagcttcaagtcag
gctctatttgccaacagtcaagcacatatatgggcccttgaaggactctcccaccttgta
gcagcctcatttagagaagactgctatggtgtagtacagacaacattatcatccattctg
tgtgccatgctgtccctccaagaggctgtggacaaacattttaaattgcctcatgcctcc
agcaagccacctcgatccacaggcactctcgtggattcttcttataaaacactgaggttt
gccctccgtgcatcattgaaaactgcaatttacaggataaccaccacctttggagaacac
ttaaaagctgtccacctttcgtcagaacacagaaaaagactgctacaatttttggagtat
aaagagtga
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