Chiloscyllium plagiosum (whitespotted bambooshark): 122554528
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Entry
122554528 CDS
T08871
Symbol
trmt13
Name
(RefSeq) tRNA:m(4)X modification enzyme TRM13 homolog
KO
K15446
tRNA:m4X modification enzyme [EC:
2.1.1.225
]
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cpla03016
]
122554528 (trmt13)
Enzymes [BR:
cpla01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.225 tRNA:m4X modification enzyme
122554528 (trmt13)
Transfer RNA biogenesis [BR:
cpla03016
]
Eukaryotic type
tRNA modification factors
Methyltransferases
122554528 (trmt13)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRM13
zf-TRM13_CCCH
zf-U11-48K
Methyltransf_32
OrgC
Motif
Other DBs
NCBI-GeneID:
122554528
NCBI-ProteinID:
XP_043555625
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All DBs
Position
11:complement(68173456..68211529)
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AA seq
470 aa
AA seq
DB search
MASERTADGIQAPLPGRCGYFVEKKKRYCKMIVAKGKRLCGEHANAASDSEGDKQRRIPC
PLDPKHTVDEDKLERHLKKCNSREKPKPVYYVKDINGGYEDAIETPRQQVSICALSKQEL
ETMVTKLLKATDGLNSKLTDQTLTHKALQEALNDPKNGDFAFKHLKQQASLAGNLERIGL
LGSNRCFVEFGAGRGKLSHWIDLALRDAENIYFLLVERATTRFKVDGKHKNRGSVFERLQ
VDIKDLSLGRVPLLVRKRLPVVGIGKHLCGAATDLALRCLMESYKTNLEDTGKEPPEKRL
KGDEMCTLGDHKCLSNCTVDSTEKRSPVLGLAIALCCHHRCEWRHYVGKEFFFSHGLDAE
DFRIFQRMSSWATCGMKRHLSGIGEAEFDKTNQKEQLEEHDFEEESFTYEGTLTVEEREH
LGHLCKRLIDQGRIYYLKQQGFDSVLQYYISPSISLENVLLTAVPLPKIQ
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atggccagtgagaggactgcagatggcatccaggcgcctctgcctgggcgatgcgggtac
tttgtggaaaagaagaagagatattgcaaaatgattgttgcaaaagggaaacgcctttgt
ggggaacatgcgaatgctgcatcagatagtgagggtgacaaacagagaagaattccatgt
ccgcttgacccaaaacacacagttgatgaagataaattagaaaggcatctgaaaaagtgt
aattcaagggaaaaacccaaacctgtttactatgttaaagatataaatgggggttatgaa
gatgcaatagagacacctagacaacaggtttctatttgtgctttgtccaaacaagaactg
gagacaatggttacaaagctcctgaaggcaacagacggtttgaactcgaaactgacagac
caaacattaactcacaaagcactacaggaggctttgaatgatccaaaaaatggagatttt
gcctttaaacatttgaaacagcaggcttcacttgctggtaatttggaaagaattggtttg
cttggatctaacagatgttttgtggagtttggtgctggtcgaggaaagttgtcccattgg
atagatcttgctttacgagatgccgagaacatttacttcctccttgtggaaagagcaact
acacgtttcaaggtggatggtaaacataaaaatagaggctcagtgtttgagcggcttcaa
gttgacatcaaagatctcagcctaggtcgggtgcctcttcttgtaagaaaaagattacct
gttgttggaattggcaagcacttgtgcggagctgctacagatcttgctttaagatgtctc
atggaaagctataaaacaaacctggaagatactggcaaggaaccaccagaaaaaagattg
aagggtgatgaaatgtgcacgttaggagatcacaaatgtctctctaattgtactgtagat
agcactgagaaaagaagtcctgtcctgggacttgctattgcactgtgttgtcatcaccga
tgtgagtggaggcattatgtaggcaaggaattttttttttcacatggtcttgatgcagaa
gatttcaggatctttcaacgtatgtcaagttgggccacctgtggaatgaaacggcatcta
agtggtataggggaggcagaatttgacaagacaaaccagaaagagcaactggaagagcat
gattttgaagaagaaagtttcacttatgaagggacactgactgtagaagagagagaacat
ttgggtcatctttgcaagcggttgatagaccaaggacgaatctactacttgaagcagcaa
ggatttgattctgttttgcaatactacatcagtcccagcatctctctagaaaatgtcctg
ctcacagctgttcctcttccaaagattcagtaa
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