Chiloscyllium plagiosum (whitespotted bambooshark): 122554533
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Entry
122554533 CDS
T08871
Symbol
prpf38b
Name
(RefSeq) pre-mRNA-splicing factor 38B
KO
K12850
pre-mRNA-splicing factor 38B
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Pathway
cpla03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122554533 (prpf38b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cpla03041
]
122554533 (prpf38b)
Spliceosome [BR:
cpla03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
122554533 (prpf38b)
Complex C
U4/U6.U5 tri-SnRNP related factors
122554533 (prpf38b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP38
Motif
Other DBs
NCBI-GeneID:
122554533
NCBI-ProteinID:
XP_043555632
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All DBs
Position
11:68364652..68396656
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AA seq
544 aa
AA seq
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MANKTAIGNHQQQQQQAGGSVKPASSIKQGNVLPLWGNEKTMNLNPLILTNILSSPYFKV
QLYELKTYHEVVDEIYFKVTHIEPWEKGSRKTAGQTGMCGGVRGVGTGGIVSTAFCLLYK
LFTLKLTRKQVMGLITHTDSPYIRGLGFMYIRYTQPPADLWDWYEPFLDDEEELDVKAGG
GCVMTIGEMIRSFLTKLEWFSTLFPRIPVPVQKNLDQYLKTRPRKIAKKDGKDSMEEPER
LSERRHSRSPRRSLTPRKSPRRSRSRSRHREGHGSFGFDKELERERERQKREREQIKDRE
RSEKDRHKSRSTDRGLDRRRSRSRDHHRSRSRDKRSTKKDREREKENERSRRRDKDYEKD
KERVSDRDRDRNVEKDSERSRDRDKRSQSKTEDRKRKEEKREKDEKRHKDDKKDSKKDKR
HSRSRSREKRHRSNSPGRGHVSKRSRSKSKEKSKHRNEHKEKSNKRSISRERTDENNGER
IKKQRSHSKEKARKRSQSKERSHKQSHSDGKDHSSKLSRRSLSTERENKSNAEGLLQGNT
TDND
NT seq
1635 nt
NT seq
+upstream
nt +downstream
nt
atggctaacaaaacggccattggaaaccaccagcaacagcagcagcaagcggggggaagt
gttaagccggcctcctccattaaacagggcaacgtgctgccactgtggggcaacgagaag
accatgaacctcaacccgctcatcctcaccaatattctctcctcaccctactttaaagtg
cagttgtatgaactgaaaacctaccatgaggttgtagatgagatctatttcaaggtcact
catattgaaccatgggagaaggggagcaggaagactgcaggccagacaggcatgtgcgga
ggggtacggggtgttggaacaggaggcattgtttctactgccttttgtctgctctacaag
ctatttaccctaaagttaactcgtaaacaagtgatgggtctaataacacatactgattct
ccgtacatccgaggtttgggattcatgtatattcggtacacacagcccccagctgatttg
tgggattggtatgaaccttttttagatgatgaagaggagcttgatgtaaaggctggtgga
ggatgcgtcatgacaataggagagatgattcgttctttccttactaaactagaatggttc
tctaccttatttccaagaattccagttcctgttcaaaagaatttggaccagtatcttaaa
actcgaccaaggaagattgccaaaaaggatgggaaggatagcatggaagagccagagcgc
ctttcagagcgtagacattcaaggtcaccaagaagatctcttactcctcgtaaatctcct
agacgatctagaagcagaagccgtcatagagaaggccatggctcttttggttttgataag
gaattagagagagagagagaacgacagaaaagggaacgagaacagataaaagacagagag
cgaagtgagaaggatagacataaatctagaagcacagaccgaggtttagaccgtaggcgg
agcagaagcagagaccaccacagaagtcgaagtagagataaaagaagtactaaaaaagat
agagagagggagaaggaaaatgaaagaagtagaaggcgagacaaagattatgaaaaggac
aaagaaagagtgagtgatcgagacagggacagaaatgttgagaaagattctgagagatca
agagaccgggataaaagaagtcaatcaaagactgaagacagaaaacgtaaggaagaaaaa
agagaaaaagatgaaaaaagacacaaggatgataaaaaggattcaaaaaaggataaaagg
catagtagaagcaggagcagagagaaaaggcatagaagcaatagtcctggtaggggtcat
gtcagcaaacgtagtagaagcaaaagcaaagagaaatctaaacatcgaaatgaacataaa
gaaaaatcaaataaaagaagcattagcagagaaaggactgatgagaataatggtgaacgg
ataaagaaacagcgtagtcatagcaaagagaaagctcgcaaacgcagtcaaagtaaagaa
cgatctcacaagcaaagtcacagtgatggtaaggaccattcaagcaaactaagccgccga
agtctcagtacagaaagagagaacaaaagcaatgcagaaggactattgcaaggcaatacc
actgacaatgactga
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