Chiloscyllium plagiosum (whitespotted bambooshark): 122555063
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Entry
122555063 CDS
T08871
Symbol
scaf4a
Name
(RefSeq) SR-related and CTD-associated factor 4 isoform X1
KO
K13167
SR-related and CTD-associated factor 4
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpla03021
]
122555063 (scaf4a)
03041 Spliceosome [BR:
cpla03041
]
122555063 (scaf4a)
Transcription machinery [BR:
cpla03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
122555063 (scaf4a)
Spliceosome [BR:
cpla03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR proteins
122555063 (scaf4a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
122555063
NCBI-ProteinID:
XP_043556651
LinkDB
All DBs
Position
12:complement(21861947..21949456)
Genome browser
AA seq
1072 aa
AA seq
DB search
MRFSCLALFLELFSLMELKPPISRAKMILITKAAIKAIKLYKHVVQIVEKFIKKCKPEFK
VPGLYVVDSIVRQSRHQFGAEKDVFGPRFSKNITATFQYLYKCPSDEKSKIVRVLNLWQK
NCVFKIEVIQPLLDMATATSVPPALENTDNNTSPPVVPPTPAQAPPITSDSLSAIQQQLP
NSDAFVAVAQLFQSTQGAQIQQILQNFQQAPKPQSPVVDNSIMSQVEALTAQLKPQSTQP
PEQKAAFDKKLLDRFDYDDEPDQVDDVKKEEESSPPPSQTSFGYSGEGIQPPMYQQLGIR
LPNMEQFQQTLMGLQQETLQQQVPPPPNGQLPTFGMVPVHPYAAMPQPTMPPAPPIQPVF
QQDYHTPSEPPPSQQQQQQEVDMEIEKPDTRETKRRSVETRRSRTRSGSRSPKRRRSRSG
SRSRRSRHKRSRSRSRERRRHSPRSRSQERREREKERERRQKGLPPIKSKIVSVCSTTLW
IGQLDKRATQQDVANLLEEFGQIESLNMIPPRGCAYIVMVHRQDAYRALQKLSRGTFKVN
QKYIKIAWALNKGMKTEYKQFWDVELGVTYIPWDKVKPEELDRLCEGGMLDNETLCPEWK
TITKASPTVVDTAENGNTAVTQPEEMPQTSLPMPAQIPGVQPIPAVSRLHPPNFSTIPPP
TFNPGVPPPPPPPPPPPFMRPGFNPVQPPPGYLPPGPIPPLSSAMPIGSSGTNIPTCESS
HLPATPLGSQEDSAKNSSLRNPTPTLVSTLRNSEDVTDGTKYFGPVQGHNPGLGGTNVPF
STTQAMPVIGSQSGTAAHTPLMSVQPPSPGLLGARPGLIPLQRPPGVPPPHLQRFPVAPP
RPLLPHLLHRGPPPPGPGGYGVPPPHAMRGPFPPQNVFGRPGVAEDRDGRQFRNDRHGFP
PGRDRDQDQRFGRSDFRNRPFGGNRNENDRYGNRHEDRDHDRHSGGRDRREWGRRSSERE
RHRDSEERNRRSSGHRDRDSRDKESRRDRDMDQRGKEKPEETDESIEEHHRSNGDTQEEI
MKQSDVIPGPESAKGESDSPNMNLKAAGMVGLEPTSSNQPDTKNSGAADEAQ
NT seq
3219 nt
NT seq
+upstream
nt +downstream
nt
atgaggttttcttgtcttgcccttttcctggagctcttttcactgatggaactaaagcca
ccaatttctagggcaaagatgattcttattactaaagctgccatcaaagctataaagctt
tacaagcatgttgtgcagattgtagagaagtttatcaaaaagtgcaaaccagaatttaaa
gttccaggattgtatgtggtcgactctattgtgcgtcaatcccgtcatcaatttggagca
gaaaaagatgtatttgggccgcggttcagcaaaaatattactgcgacattccagtatttg
tataaatgtccatctgatgagaagagcaagatagttcgtgtgctgaacctttggcaaaag
aactgtgttttcaagattgaagttatacagccattattagatatggcaactgcaacatca
gttccacctgcactggaaaatactgataacaatactagtccccctgttgttcctccgaca
cctgcacaagctcctccgattacatctgattctttgtctgcgatacagcagcaactaccc
aactctgatgcatttgtagctgtagcacagctttttcaatcgacacaaggagcacagata
caacagatattacagaatttccagcaggctccaaagccacagtcaccagttgtagacaat
agcatcatgtcccaggtggaagccttaacagctcagttgaagccacagagtacacagcct
ccagagcaaaaggctgcctttgataagaaattgcttgaccgctttgattatgatgatgaa
ccagaccaggttgatgatgtgaagaaggaagaagaatccagtccaccaccttctcagact
tcatttggctactctggagaaggtatacagccacctatgtatcagcagcttggaattcga
ctgccaaatatggaacaatttcagcagaccttgatgggactccagcaggagacattgcaa
cagcaggttcccccacctcccaatggacaattaccaacatttggcatggttcctgttcat
ccatatgcagctatgccacagcctaccatgcctccagcaccacctatacagcctgttttt
cagcaagactaccatactccaagtgaaccaccaccatcgcaacagcagcagcagcaagaa
gtagatatggagattgaaaaacctgatacacgagaaacaaaacgtcgtagtgttgaaact
agaagatcacgcactcggtctggatcaagatcaccaaagcgaagacgttctcggtctgga
tctaggtcaagaaggtcaagacacaagcgttctcgatcacgatccagagaaagacgcagg
cactctcctcgttcgcgatctcaagagcgacgtgaaagagagaaggagagagaacgccgt
caaaaaggacttccaccaattaaatcaaaaattgttagcgtttgcagcacaaccctctgg
ataggacaattagacaagagggcaacgcagcaggatgttgcaaatcttctggaagaattt
ggccaaatcgaatctttgaatatgattcctccaagaggatgtgcttacattgtgatggtg
catcgacaagatgcatacagagccttacagaagcttagcagagggacatttaaggtcaat
caaaagtatataaagattgcctgggccttaaacaagggaatgaaaactgaatacaaacag
ttttgggatgtggagcttggagtaacttacattccttgggacaaagttaaaccagaagaa
ttggaccgtttgtgtgagggaggaatgctagacaatgaaacactttgtccagaatggaag
actattacaaaggcatcaccaacagttgttgatacagctgaaaatggtaacactgctgtg
acacaaccagaagaaatgcctcaaacgtctttgccaatgcctgcacagattcctggagtt
cagccaattccagctgttagtaggctccatccaccaaacttttcaacaattccaccacct
actttcaatcctggagtgccaccacctccacctccaccaccaccacctccctttatgcga
cctggtttcaatccagtacagccaccgcctggttatcttccaccagggcctattcctcca
ctgagttctgcaatgcccattgggagttcaggaacgaacattccaacatgcgagtcttcc
catcttcctgcaacaccactgggttcccaggaagatagtgcaaagaattcctcactgagg
aacccgacccctaccttagtgtctacgctgagaaacagtgaggacgttacagatggtact
aaatattttggacctgtacagggacataaccctgggctgggaggtaccaacgtaccattc
tctacaacacaagctatgcctgtcattggaagtcaaagtggaactgcagcacacactccc
ttaatgagtgtacagccaccaagccctggtctcttgggtgcgcggcctggtttaataccg
ctacagcggccgcctggagttccaccacctcatctgcaaaggtttcctgttgctccacca
cgtcctctgctaccacatttattacataggggcccaccacctccagggccaggaggatat
ggagttcctccacctcatgccatgcgtggtccgtttccacctcaaaatgtttttggtcgc
cctggtgtggctgaggatagagatggaaggcaatttaggaatgaccgacatggatttcct
ccaggaagggatcgcgaccaggatcaacgctttggcagatcagatttcagaaatcgtcct
tttggtggaaaccgaaatgaaaatgatcgttatggaaatcgtcatgaagatagagatcat
gatcgccatagtggtggacgtgatagaagggaatgggggagaagaagctctgaacgtgag
agacacagagactcggaagaaaggaatagacgatcaagtggacatagggatcgtgattca
cgagacaaagaatctcgcagggatagagatatggatcaacgtggaaaagaaaagcctgaa
gaaactgatgaaagcattgaagagcatcacagatctaatggcgatacacaggaagaaata
atgaaacagtccgacgtgatcccaggtcctgaatctgctaaaggagaatctgattcacca
aacatgaatttgaaagctgcaggaatggtaggattggagcctacctcaagtaatcaacct
gatacaaaaaattcaggtgcagctgatgaggctcagtga
DBGET
integrated database retrieval system
