Chiloscyllium plagiosum (whitespotted bambooshark): 122555140
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Entry
122555140 CDS
T08871
Symbol
ddx3xa
Name
(RefSeq) DEAD-box helicase 3 X-linked a isoform X1
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Pathway
cpla04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
122555140 (ddx3xa)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpla03019
]
122555140 (ddx3xa)
03041 Spliceosome [BR:
cpla03041
]
122555140 (ddx3xa)
03036 Chromosome and associated proteins [BR:
cpla03036
]
122555140 (ddx3xa)
Enzymes [BR:
cpla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122555140 (ddx3xa)
Messenger RNA biogenesis [BR:
cpla03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
122555140 (ddx3xa)
mRNA cycle factors
Common to processing body (P body) and stress granule
122555140 (ddx3xa)
Spliceosome [BR:
cpla03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
122555140 (ddx3xa)
Chromosome and associated proteins [BR:
cpla03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
122555140 (ddx3xa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Motif
Other DBs
NCBI-GeneID:
122555140
NCBI-ProteinID:
XP_043556787
LinkDB
All DBs
Position
12:39449860..39475530
Genome browser
AA seq
544 aa
AA seq
DB search
MDRGGFGSREGGNSRWVEDKRDDDDWSKQLPPNERMEQELFSASNTGINFEKYDDIPVEA
TGANSPPHIETFQDVNMGEIIMGNIELSRYDRPTPVQKHAIPIIISKRDLMACAQTGSGK
TAAFLLPILSQIYAEGPGEALKNAKAQDSSKYGRRKQYPIALVLAPTRELAVQIYDESRK
FAYRSKVRPSVVYGGADIGQQIRDLERGCHLLVATPGRLVDMIERGKVGLDYCKYLVLDE
ADRMLDMGFEPQIRRIVEQDAMPPKDVRQTLMFSATFPKEIQILARDFLDEYIFLAVGRV
GSTSENITQKVVWVEEQDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYREGYAC
TSIHGDRSQRDREEALHQFRSGRCPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHR
IGRTGRVGNLGLATSFFNEKNSNITKDLLDLLVEAKQEVPSWLENLAYEQQHRSSGRGRS
KSRFGAGFGARDYRQTSSSSFNTRGNRSTGHSGPRGYGGGGYGSYYNADGYGGAYNSQVD
WWGN
NT seq
1635 nt
NT seq
+upstream
nt +downstream
nt
atggatcgtggaggatttggatctcgtgaaggtggaaatagtcgttgggtggaagacaaa
cgggatgatgatgattggtcaaaacagctgccaccaaatgaacgcatggagcaggagttg
ttttctgcaagtaacacaggaatcaactttgagaaatatgatgacattcctgttgaagca
actggtgccaactctcctcctcacattgaaactttccaggacgtaaacatgggagaaata
ataatgggcaacattgagctgagtcgctatgatcgtccaacccctgtccagaaacatgca
atccccatcattatatcgaagagggatttgatggcatgtgctcaaacaggctctggaaaa
actgcagcatttttgcttcctattcttagccaaatctatgcagaaggtcctggtgaagct
ttaaagaatgcaaaagctcaagattcctctaaatatggtcgccgtaagcaatatccaatt
gctttggttctagctcctaccagagaacttgcagtacagatctatgatgaatccagaaag
tttgcatatcgttctaaagttcgaccatctgtagtttatggaggagctgacattggacaa
cagatcagagacttggagcgtggatgtcacctgcttgttgccactcctggccgtttagtt
gatatgatcgagagaggaaaggttggattagactattgcaagtatttagtattggatgag
gctgacaggatgcttgatatgggatttgaaccacagattcgccgtattgttgagcaggat
gcaatgccaccaaaagacgtgaggcagactctgatgttcagtgcaacgtttccaaaagag
atacagatacttgctcgtgactttcttgatgaatatatattcttggcagttggtcgtgtg
ggttccacctctgaaaacataactcagaaagtggtatgggtggaggaacaggacaagcga
tcattccttttggacctcttgaatgccacaggcaaagattcccttacactggtctttgtg
gagactaagaaaggtgctgattcattggaggattttctttatcgtgagggttatgcttgt
acaagtatccatggtgaccgttctcagagagatagagaagaggctctgcatcagtttcgc
tctggaagatgccccatcctggttgccactgcggttgcagcccgtgggcttgacatttct
aatgtcaaacatgttatcaattttgatctaccaagtgatatcgaggagtatgtgcatcgc
attggacgaactggtagagttggcaaccttggtcttgccacctcgttctttaatgagaag
aacagcaatattactaaagatcttctggatctgcttgtggaagctaagcaagaagtacca
tcctggctagaaaacctggcatatgagcaacagcatagaagctctggtcgtggacgatca
aagagtcggtttggagcaggatttggagcccgagattacaggcagaccagcagcagcagc
ttcaatactcgtgggaaccgcagcactggccacagtggacctagagggtatggaggaggt
ggttatggaagttattacaatgctgatggatatggtggagcttacaactcccaggtggat
tggtggggaaactga
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