Chiloscyllium plagiosum (whitespotted bambooshark): 122555662
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Entry
122555662 CDS
T08871
Symbol
dhx36
Name
(RefSeq) ATP-dependent DNA/RNA helicase DHX36
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Pathway
cpla03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122555662 (dhx36)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpla03019
]
122555662 (dhx36)
03012 Translation factors [BR:
cpla03012
]
122555662 (dhx36)
Enzymes [BR:
cpla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122555662 (dhx36)
Messenger RNA biogenesis [BR:
cpla03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
122555662 (dhx36)
Translation factors [BR:
cpla03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
122555662 (dhx36)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
DEAD
HA2_C
Helicase_C
HA2_N
AAA_22
nSTAND3
AAA_19
ATPase
AAA_23
NPHP3_N
AAA_14
Ntox8
NB-ARC
ABC_tran
T2SSE
PhoH
ResIII
Motif
Other DBs
NCBI-GeneID:
122555662
NCBI-ProteinID:
XP_043557593
LinkDB
All DBs
Position
13:66503703..66630208
Genome browser
AA seq
945 aa
AA seq
DB search
MVKLPHTKDDRQTVLLYLSIFAFGIRQSPGSIRFRAFLSIEQPRAVVQMDEAREEHITRL
LNSVQTRGDYKDQRASVSADSSKNWRSACPSTSTIKEIKPETSADLEYLFETITQDVFLD
EELREDLMKKKSSLRYLDMKRFREKLPSYGMKKEVIDLINENQVLVISGETGCGKTTQVT
QFILDDYIEKGKGSLCRVVCTQPRRISAISIAERVAAERAEACGEGNSTGYQIRLQSRLP
RKQGSILYCTTGIILQWLQSDSLLSTVSHLVLDEVHERSLQSDVLMTIVKDILPFRPDLK
VILMSATLNADKFSEYFGNCPMLHIPGFTYPVKEYILEDVIELLQYRPQTQEIRRPSSKR
RFMQGCMFRPEKERVEEEYQQQWPEYLRELQGRYSDSTIEALEVLHDDDKIDLNLIVALI
KHIVLLGEEGAILVFLPGWDNISSLNDLLTAQTMFKSDRFVIIPLHSLMPSVNQTEVFKK
PPPGVRKIVIATNIAETSITIDDVVHVIDGGKIKETHFDTQNNISTMAAEWVSKANAKQR
KGRAGRVQPGSCYHLYNGLRESLLDDYQLPEIMRTPLEELCLQIKILNLGRIAQFLEKAM
QPPSKEAVNLAVTHLKELNALDRNEELTPLGVHLARLPVEPHIGKMILFGALLCCLDPVL
TIAASLSFKDPFVIPLGKEKLADAKRRELSKQSRSDHLTVVNAFKGWEEAKRRGFRSEKD
YCWEYFLSPNNLQMLHNMKGQFTEHLLVAGFVSSKNPRDSQANINSENEKLVKAVVCAGL
YPKVAKIRPSFSKKRKMVKVFTKSDGRVNIHPKSVNAEEGEFEHNWLIYHLKMRTTSIYL
YDCTEVSPYSLLFFGGDISIQKEQDQETISVDEWIVFQSPSRIAHLVKDLKRELDALLQD
KIKKPRPVDWNNRSKDCAVLSAIIDLITTQDTASAKNYTPRFQSY
NT seq
2838 nt
NT seq
+upstream
nt +downstream
nt
atggtgaagcttcctcacaccaaagatgaccgccaaaccgtccttctctatctgagcata
tttgcattcggcatcagacaaagtccaggaagcatacgctttcgggcattcctctccatt
gagcaaccaagggcagttgtgcagatggatgaagcaagagaggagcacatcacccgactg
ctgaattctgtccagacacggggtgattacaaagatcagcgtgcctcagtgtcagccgac
tctagcaagaactggaggagtgcatgtccctctacatcaaccatcaaggaaattaaacca
gagaccagtgctgatctagagtacctctttgagaccattactcaggatgtgtttttggat
gaagaactgagggaagaccttatgaagaagaaatcgagcttgagatacttggatatgaag
cgatttcgggagaaactcccttcttacggtatgaagaaagaagttatagacttgatcaat
gaaaatcaggtgcttgtcataagtggagaaacaggttgcgggaaaaccacacaggtgacc
cagttcattctggatgactacattgagaaaggcaagggttctctgtgcagggttgtgtgt
acccagcctcgacggatcagtgcaatctcgatagctgagagggtcgcagcagaaagagct
gaagcctgcggtgaagggaacagtactggctaccagatcaggttacagagccgcctgcca
cggaaacaaggttccatcttgtactgcacgactggaatcattctccagtggctacagtca
gactctcttctatctactgtcagtcaccttgttttggacgaggtccacgagaggagtttg
cagtcagatgtcctgatgacaattgtgaaggacatcctgccttttaggccagatctgaag
gtgatattgatgagtgcaactctaaatgctgacaagttttcagaatattttggcaactgt
cccatgctgcatattccgggattcacctatccagtgaaggaatacatcttggaagatgtg
attgagttgctccagtatcgtccacaaacccaagaaattcggcgaccgtcctccaagagg
agattcatgcaaggttgcatgtttcgaccagagaaggaacgagtggaggaagaataccag
caacaatggccagaatatttgagagagttgcaaggaagatattctgacagtacgattgaa
gccttggaagttctgcatgatgatgataaaatagacctcaatctgattgtagccctcata
aaacacattgttcttcttggagaggagggtgccattttagtcttccttcctggatgggac
aatatcagcagcttaaatgaccttctgactgcacaaaccatgttcaaatcagatcggttc
gtgatcattcctctccactctctcatgccttcggtgaatcagacagaggttttcaagaag
ccacctccgggagttcgcaagattgtaattgctaccaacattgcagagacaagtatcact
atagatgatgtggtccatgtgatagatggaggaaagataaaagaaactcacttcgacact
caaaacaatatcagcacaatggcagcggaatgggtcagcaaagctaatgccaagcagcgg
aaaggtcgagctggcagggtgcagccaggttcctgttaccacttgtacaatggtttgcgg
gagagccttctggatgattatcagcttccagaaatcatgaggactccacttgaagagctt
tgcttgcagatcaagattttaaatcttggtcgaattgcccaattcttggaaaaggcaatg
cagcctccatcgaaggaagctgttaacctggctgtgacccaccttaaagagctgaatgct
ttggataggaatgaagagcttactccacttggggtccatttagctcgcctgccagtggaa
ccccacatcgggaagatgattctgtttggagcattattgtgctgtctggatccggttctc
accattgcagccagtctcagcttcaaggatccatttgtgatcccgctgggtaaagagaaa
ctggctgatgcaaaacgccgggaattatcgaagcagtctcggagtgaccacctgactgtg
gtaaacgcgtttaagggctgggaagaagcaaaaaggagaggtttcagatcagagaaggac
tactgctgggagtacttcctttctccaaacaacctgcagatgcttcataacatgaaaggt
caatttactgaacacctgctggtggctggctttgtcagcagcaagaatcctcgagattcc
caggcaaatataaattcagaaaacgagaagctagttaaagctgtggtatgtgcgggcttg
tatccgaaagtggcaaaaatacgaccgagtttcagcaagaagagaaaaatggtgaaagtc
tttaccaagtcagatggaagagtcaacattcacccaaagtctgttaatgctgaagaaggt
gaatttgagcataactggctaatctaccatttgaagatgcggacaaccagtatctacctg
tatgattgcacggaggtctcaccttactccttgctgttctttggaggagatatttcgata
cagaaggagcaggaccaggagaccatctctgtggatgaatggattgtgttccagtcacca
tccagaattgcccatttagtaaaggatctgaaaagggagctagatgctcttctacaagac
aagattaagaagccccgacctgtggattggaataatcgatcgaaagactgtgctgtcttg
tcagcaatcatagacttgataaccacacaagacaccgccagtgcgaagaactacacgccc
cgattccagagctactga
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