KEGG   Chiloscyllium plagiosum (whitespotted bambooshark): 122555674
Entry
122555674         CDS       T08871                                 
Name
(RefSeq) collagen alpha-4(IV) chain-like
  KO
K06237  collagen type IV alpha
Organism
cpla  Chiloscyllium plagiosum (whitespotted bambooshark)
Pathway
cpla04382  Cornified envelope formation
cpla04510  Focal adhesion
cpla04512  ECM-receptor interaction
cpla04518  Integrin signaling
cpla04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:cpla00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    122555674
   04518 Integrin signaling
    122555674
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    122555674
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    122555674
 09150 Organismal Systems
  09158 Development and regeneration
   04382 Cornified envelope formation
    122555674
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:cpla04147]
    122555674
   00536 Glycosaminoglycan binding proteins [BR:cpla00536]
    122555674
Exosome [BR:cpla04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   122555674
Glycosaminoglycan binding proteins [BR:cpla00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   122555674
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 122555674
NCBI-ProteinID: XP_043557605
LinkDB
Position
13:80904202..81144942
AA seq 1591 aa
MERWSFRRCVPQLAPSTALWSLLLHLFLRGIQAGHIDYTGPCYGRDCSVCQCFPAKGAQG
QPGLLGRQGPTGSPGLQGPQGPPGEKGQKGDRGLPGFPGIKGDGGATGVPGFLGLDGIPG
FPGLQGPRGPPGLDGCNGTRGDPGLPGSAGYPGRPGLPGIPGPKGSKGDSLMFTFPLMGP
PGDPGSQGPSGFPGVPGASGLPGIAGPRGRPGFPGPPGLQGLQGDQGIGYPGQKGEKGEQ
GDPGHIELIEPQEEIFFKGDQGEKGPQGPLGFPGFPGPSVFPTFPGEKGEKGIIGFPGDR
GDRGDPGPRGLPGTLLISCDSQKGDAGRRGLQGSIGEQGLPGPPGQPGRPGTIGSGLPGL
PGFPGLDGPKGQKGQKGSDDCPLPRTIPGPRGLMGSAGPPGLPGLKGSPGFICETTGPPG
LPGPKGNEGAPGPKGIHGLKGDPGDCACMPGLTGDPGPPGRPGIPGNPGNSGRKGEQGDR
GPPGSAGLPGLPGPPGRQGTPGAKGQRGIPSQIAKKGEKGNQGDPGLPGPVGRPGEPGQP
GILGAMGQLGIPLLRYLSKLPQAAVAAVHTHSRMHCKTSPYLLPEQFQSLPLTPPKGPEH
HHEGDSSCPSVQGSHGPKGFPGMPGPKGLPGNPGRPGNIGFDGLKGLKGEAGIRSFAGAQ
GLQGFTGDPGPQGPPGRTENGAQGFPGTLGIQGEKGPPGDSYDGPPGTPGSLGRRGSSGA
VGDTGGPGPPGRQGRDGVPGFPGLKGLQGNPGLVGQAGPPGPPGFPAEKGEPGPIGQPGP
PGIRGPSGPCLKGLPGNPGPLGPSGMKGLKGIPGNLGMPGSIGMQGQPGPMGTNGIPGFL
GPAGNKGSQGLQGYPGATGPRGFPGIPGPPGQPGNDGIRGTDGDLGLRGRKGEGGDPGEK
SWPRIIYEKGTRGILGVPGQSGFTGSRGEKGLPGNPGIPGLPGRLGFPGSEKGFRGMRGP
SGLCGQQGPMGQKGGRGIVGFPGMKGDKGDRGQPGSPGPEGTSGCKGQKGDIGDSISLNG
LPGIKGQTGDTGEPGVDGFPGETGSPGIDGRPGAPGCKGVGGDLGTPGFPGYQGPPGDPG
NPGPTGLPGIQGQPGSARPPGPPGPKGQPGAPGLHGLNGLPGQKGSPGPPGPSERGSPGS
PGSMGLKGEKGSPGPPGSSSRCPEGRKGPQGPEGPPGVRGPPGPPGKRGPSCDVQSTGPP
GDEGPPGFDGPPGPSGFPGDPGLPSLPFPGDPGDPGRPGQPGARGPPGEQGPCGHHGLPG
PPGPKGVMGDQGFAGFPGIDGPPGLPGDRGDRGCVGAPGSQGDPGSPGAIITDGEMDKSN
LQGDPGAPGPSGFPGPPGSTGATGPRGPPGKPGPPGSPGICPPFSAGFLIVVHSQSQEVP
TCPQNMPRLWQGYSLIYLESQEKPHNQDLGLAGSCLPMFSTMPFAYCSIDEVCHYATRND
KSYWLSTTAPIPMMPLVEREVEAYISRCSVCEAPSVAVAVHSQDHTIPSCPSGWLSLWTG
YSFLMHTGAGATGGGQTLASPGSCLEDFRSTPFIECQGARGTCHYFTDKYSFWLTTVQSS
HQFVLNTPSETLKAEQLQRQRVSRCQVCLKQ
NT seq 4776 nt   +upstreamnt  +downstreamnt
atggagcgctggagtttccgcagatgtgtcccacagctcgccccatccaccgccctgtgg
tcactgctgctgcacctcttcctgcgaggaattcaggcgggtcacattgactacactggt
ccttgttatggacgggattgttcggtctgccagtgtttcccagctaaaggagcccagggt
cagccaggcttactaggaagacaaggtccaacaggttcccctggacttcaaggcccacaa
ggtccaccgggagagaaaggacaaaagggagatcgcggcctgcctggatttcctggaatt
aaaggagatggaggcgctactggtgttcctggctttctaggattagacggcattccgggt
tttccagggctgcaaggcccaagggggcctcctggattggatggttgtaatggaactcga
ggagaccctggccttccagggagtgcaggatatccaggaagacctggcttgccgggaata
ccaggaccaaagggctcaaaaggagattctctaatgtttaccttccctttgatgggtccc
ccgggagacccaggatcccaaggccccagtggctttcctggtgttccaggagcctctggt
cttccaggtattgcaggaccgagaggccgaccgggttttccaggacctcctggtttacaa
gggttacaaggtgaccagggcattggatatccaggtcaaaaaggcgagaagggtgaacaa
ggtgacccaggacatattgaactaatcgagcctcaggaagaaattttcttcaaaggagat
cagggcgagaaaggccctcaagggccacttggatttcctggattccctgggccttcagtt
ttccccacatttccgggtgaaaagggggaaaagggtattattggctttcctggtgatcgg
ggtgatagaggtgacccaggacctcgtggactcccaggaactctgctcatatcctgtgac
tctcagaaaggagatgcaggtagacgaggtttacagggcagtatcggtgaacaggggctg
ccaggacccccgggtcaaccaggcaggccaggtacaatcggatcaggtttaccaggtctt
ccagggtttccgggtcttgatggtcctaaaggacagaaaggacagaaaggcagcgacgac
tgtccattacccagaaccatcccaggtcctcgagggctgatgggttcagcaggtcctcca
ggtctcccaggtctgaaaggcagcccaggtttcatttgtgaaacaacgggacctccaggg
ttaccaggtccaaaaggtaacgaaggagctccaggtccaaaaggaatccatggtttaaaa
ggagatccaggagactgtgcctgcatgccgggtttgacaggagacccaggacctccaggt
aggccaggcattcccggaaatcctggaaattcaggaagaaagggagaacagggtgaccgt
ggaccaccaggatcagcaggattgccaggacttccgggacctcctggaaggcaaggcacc
cctggtgcaaagggacagagaggaataccatcacagattgcaaagaaaggagagaaagga
aatcaaggtgatccaggactgccaggtcccgttggaagaccaggagaacccggtcaacct
ggaattctgggagctatgggccagctgggaatcccacttctcagatatttatccaaacta
ccacaagctgctgtggctgcagtacacactcactccagaatgcactgcaaaacatcacca
tatttacttcctgagcagttccagtctctgccactgacaccaccgaaaggaccagagcat
catcatgaaggtgattcttcgtgtccaagtgtccaagggtcacatggtccaaagggattt
ccagggatgccagggccgaaaggtttaccgggaaatcctggcagaccggggaatatcggc
ttcgatgggctcaaaggcctaaaaggtgaagcagggattcggtcgtttgctggagcacaa
ggtttgcaaggttttactggtgaccccggtcctcaaggacctcctggacgaacagaaaat
ggagcacaaggttttccaggtacgcttggtattcagggagaaaaaggtccacctggtgac
tcatacgatggtcctccagggacccctggatctctcggaagaagaggatcatcaggtgca
gttggagatactggaggtccagggccaccaggaaggcaagggcgtgatggagttccagga
tttcctggacttaaagggctccaaggcaatccaggcctagttggacaggccgggcctcct
ggcccacccggtttccctgcagagaaaggcgagccaggccccattgggcagcctgggcct
cccgggatacgtggaccctcaggcccatgtctgaaagggttaccaggaaatcccggacct
ttaggcccatcagggatgaagggtcttaaaggaattcctggaaatctgggaatgccgggt
tcaattggcatgcaaggccaaccaggtccgatgggcaccaatgggatccctggctttctt
ggtccagctggcaacaaagggagccaaggccttcagggatatccaggagcaacaggtcca
cgtggatttccaggaattcctggaccaccaggacaaccagggaatgatggaataagaggc
actgatggtgaccttggattaagaggaagaaaaggagaaggaggggatccaggagaaaag
tcatggccccgaatcatttatgaaaaaggcactcgaggaatattgggtgttcctggtcaa
agtggatttacaggctcaagaggtgaaaaggggcttcctgggaacccaggtatccctgga
ttgcctggcaggcttggttttccaggctccgagaaaggttttcgtgggatgaggggacca
tcgggtctttgtggacagcaagggccaatgggacaaaaaggtggaagaggcattgttgga
tttccaggaatgaagggggacaagggtgacagaggacaaccagggtcacctggacctgaa
ggaacatctggttgtaaaggacaaaaaggtgatattggtgactctattagtttgaacgga
ttgcctggaatcaaagggcagactggtgacactggagaaccaggtgtcgatggtttccca
ggtgaaactggttctcctggtatcgatggaaggccgggtgcccctgggtgcaaaggggtc
ggtggtgatctgggtactccaggtttcccaggataccaaggacctcccggagatccagga
aacccagggccaacaggattgcctggaatccaaggacaaccaggatctgcgagaccgcct
ggcccacctggtcccaaaggtcaacctggagcacctggtctacatggtctcaatggtttg
ccaggacagaaaggatctcctggacctccaggaccaagtgaaagagggtcccctggatca
ccaggatcaatggggctgaaaggtgaaaagggctctccagggcctccaggaagctccagt
cggtgcccagagggtaggaaaggacctcaaggacctgaaggccccccaggtgtacgtggg
ccaccgggacctccaggtaaaagaggaccatcttgtgatgttcaatcaactggaccacca
ggagatgaaggaccaccgggttttgatggcccaccaggtccttctggtttccccggtgac
ccagggctgccttccttaccgtttccaggggatcctggtgatccaggccgaccgggtcaa
cctggtgctcgaggtccacctggagagcaggggccatgtggccaccacggtcttccaggg
ccaccaggtccaaaaggtgtaatgggtgaccagggcttcgctggtttccctgggattgat
ggaccaccaggacttccaggtgatcgaggtgaccgtggctgtgttggtgcaccaggatct
caaggtgatccaggctcacctggtgcaatcattacagatggtgaaatggataaaagtaat
cttcaaggagacccaggggccccaggacccagtggctttccaggaccaccaggatcaact
ggagctactggcccccgtggccctcctgggaaaccaggtccaccaggaagcccaggaata
tgtcctccattctcggctgggttcttgatcgtggtccacagtcagtcacaggaggtacct
acatgtcctcaaaacatgcctcgcctttggcaaggatatagcttgatttatctggagagc
caagagaaacctcacaatcaggatcttggtctagctggctcttgtctgccaatgttcagt
actatgccatttgcatattgcagcattgatgaagtttgtcactatgctactagaaatgac
aaatcctattggctgtctaccactgcccctatccccatgatgccacttgtcgaacgagag
gtcgaagcctatatcagcaggtgctctgtctgtgaagctccttcagtcgctgtggctgta
cacagccaggaccacaccattccctcctgcccttcagggtggctcagcctttggactgga
tactcgtttttgatgcacacaggagctggtgccacaggaggaggtcagaccctggcatca
cctgggagctgtctggaggatttccgctcgacaccgttcatcgagtgtcagggggctcgg
ggcacttgccattactttactgataaatacagcttctggctgacaactgtgcaatcaagc
caccagtttgtattaaatactccttcagaaactctgaaagcagaacaattacaaagacaa
cgagtcagtaggtgtcaggtttgcctgaagcaataa

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