Chiloscyllium plagiosum (whitespotted bambooshark): 122555674
Help
Entry
122555674 CDS
T08871
Name
(RefSeq) collagen alpha-4(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Pathway
cpla04510
Focal adhesion
cpla04512
ECM-receptor interaction
cpla04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
122555674
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
122555674
09142 Cell motility
04820 Cytoskeleton in muscle cells
122555674
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cpla04147
]
122555674
00536 Glycosaminoglycan binding proteins [BR:
cpla00536
]
122555674
Exosome [BR:
cpla04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
122555674
Glycosaminoglycan binding proteins [BR:
cpla00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
122555674
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
122555674
NCBI-ProteinID:
XP_043557605
LinkDB
All DBs
Position
13:80904202..81144942
Genome browser
AA seq
1591 aa
AA seq
DB search
MERWSFRRCVPQLAPSTALWSLLLHLFLRGIQAGHIDYTGPCYGRDCSVCQCFPAKGAQG
QPGLLGRQGPTGSPGLQGPQGPPGEKGQKGDRGLPGFPGIKGDGGATGVPGFLGLDGIPG
FPGLQGPRGPPGLDGCNGTRGDPGLPGSAGYPGRPGLPGIPGPKGSKGDSLMFTFPLMGP
PGDPGSQGPSGFPGVPGASGLPGIAGPRGRPGFPGPPGLQGLQGDQGIGYPGQKGEKGEQ
GDPGHIELIEPQEEIFFKGDQGEKGPQGPLGFPGFPGPSVFPTFPGEKGEKGIIGFPGDR
GDRGDPGPRGLPGTLLISCDSQKGDAGRRGLQGSIGEQGLPGPPGQPGRPGTIGSGLPGL
PGFPGLDGPKGQKGQKGSDDCPLPRTIPGPRGLMGSAGPPGLPGLKGSPGFICETTGPPG
LPGPKGNEGAPGPKGIHGLKGDPGDCACMPGLTGDPGPPGRPGIPGNPGNSGRKGEQGDR
GPPGSAGLPGLPGPPGRQGTPGAKGQRGIPSQIAKKGEKGNQGDPGLPGPVGRPGEPGQP
GILGAMGQLGIPLLRYLSKLPQAAVAAVHTHSRMHCKTSPYLLPEQFQSLPLTPPKGPEH
HHEGDSSCPSVQGSHGPKGFPGMPGPKGLPGNPGRPGNIGFDGLKGLKGEAGIRSFAGAQ
GLQGFTGDPGPQGPPGRTENGAQGFPGTLGIQGEKGPPGDSYDGPPGTPGSLGRRGSSGA
VGDTGGPGPPGRQGRDGVPGFPGLKGLQGNPGLVGQAGPPGPPGFPAEKGEPGPIGQPGP
PGIRGPSGPCLKGLPGNPGPLGPSGMKGLKGIPGNLGMPGSIGMQGQPGPMGTNGIPGFL
GPAGNKGSQGLQGYPGATGPRGFPGIPGPPGQPGNDGIRGTDGDLGLRGRKGEGGDPGEK
SWPRIIYEKGTRGILGVPGQSGFTGSRGEKGLPGNPGIPGLPGRLGFPGSEKGFRGMRGP
SGLCGQQGPMGQKGGRGIVGFPGMKGDKGDRGQPGSPGPEGTSGCKGQKGDIGDSISLNG
LPGIKGQTGDTGEPGVDGFPGETGSPGIDGRPGAPGCKGVGGDLGTPGFPGYQGPPGDPG
NPGPTGLPGIQGQPGSARPPGPPGPKGQPGAPGLHGLNGLPGQKGSPGPPGPSERGSPGS
PGSMGLKGEKGSPGPPGSSSRCPEGRKGPQGPEGPPGVRGPPGPPGKRGPSCDVQSTGPP
GDEGPPGFDGPPGPSGFPGDPGLPSLPFPGDPGDPGRPGQPGARGPPGEQGPCGHHGLPG
PPGPKGVMGDQGFAGFPGIDGPPGLPGDRGDRGCVGAPGSQGDPGSPGAIITDGEMDKSN
LQGDPGAPGPSGFPGPPGSTGATGPRGPPGKPGPPGSPGICPPFSAGFLIVVHSQSQEVP
TCPQNMPRLWQGYSLIYLESQEKPHNQDLGLAGSCLPMFSTMPFAYCSIDEVCHYATRND
KSYWLSTTAPIPMMPLVEREVEAYISRCSVCEAPSVAVAVHSQDHTIPSCPSGWLSLWTG
YSFLMHTGAGATGGGQTLASPGSCLEDFRSTPFIECQGARGTCHYFTDKYSFWLTTVQSS
HQFVLNTPSETLKAEQLQRQRVSRCQVCLKQ
NT seq
4776 nt
NT seq
+upstream
nt +downstream
nt
atggagcgctggagtttccgcagatgtgtcccacagctcgccccatccaccgccctgtgg
tcactgctgctgcacctcttcctgcgaggaattcaggcgggtcacattgactacactggt
ccttgttatggacgggattgttcggtctgccagtgtttcccagctaaaggagcccagggt
cagccaggcttactaggaagacaaggtccaacaggttcccctggacttcaaggcccacaa
ggtccaccgggagagaaaggacaaaagggagatcgcggcctgcctggatttcctggaatt
aaaggagatggaggcgctactggtgttcctggctttctaggattagacggcattccgggt
tttccagggctgcaaggcccaagggggcctcctggattggatggttgtaatggaactcga
ggagaccctggccttccagggagtgcaggatatccaggaagacctggcttgccgggaata
ccaggaccaaagggctcaaaaggagattctctaatgtttaccttccctttgatgggtccc
ccgggagacccaggatcccaaggccccagtggctttcctggtgttccaggagcctctggt
cttccaggtattgcaggaccgagaggccgaccgggttttccaggacctcctggtttacaa
gggttacaaggtgaccagggcattggatatccaggtcaaaaaggcgagaagggtgaacaa
ggtgacccaggacatattgaactaatcgagcctcaggaagaaattttcttcaaaggagat
cagggcgagaaaggccctcaagggccacttggatttcctggattccctgggccttcagtt
ttccccacatttccgggtgaaaagggggaaaagggtattattggctttcctggtgatcgg
ggtgatagaggtgacccaggacctcgtggactcccaggaactctgctcatatcctgtgac
tctcagaaaggagatgcaggtagacgaggtttacagggcagtatcggtgaacaggggctg
ccaggacccccgggtcaaccaggcaggccaggtacaatcggatcaggtttaccaggtctt
ccagggtttccgggtcttgatggtcctaaaggacagaaaggacagaaaggcagcgacgac
tgtccattacccagaaccatcccaggtcctcgagggctgatgggttcagcaggtcctcca
ggtctcccaggtctgaaaggcagcccaggtttcatttgtgaaacaacgggacctccaggg
ttaccaggtccaaaaggtaacgaaggagctccaggtccaaaaggaatccatggtttaaaa
ggagatccaggagactgtgcctgcatgccgggtttgacaggagacccaggacctccaggt
aggccaggcattcccggaaatcctggaaattcaggaagaaagggagaacagggtgaccgt
ggaccaccaggatcagcaggattgccaggacttccgggacctcctggaaggcaaggcacc
cctggtgcaaagggacagagaggaataccatcacagattgcaaagaaaggagagaaagga
aatcaaggtgatccaggactgccaggtcccgttggaagaccaggagaacccggtcaacct
ggaattctgggagctatgggccagctgggaatcccacttctcagatatttatccaaacta
ccacaagctgctgtggctgcagtacacactcactccagaatgcactgcaaaacatcacca
tatttacttcctgagcagttccagtctctgccactgacaccaccgaaaggaccagagcat
catcatgaaggtgattcttcgtgtccaagtgtccaagggtcacatggtccaaagggattt
ccagggatgccagggccgaaaggtttaccgggaaatcctggcagaccggggaatatcggc
ttcgatgggctcaaaggcctaaaaggtgaagcagggattcggtcgtttgctggagcacaa
ggtttgcaaggttttactggtgaccccggtcctcaaggacctcctggacgaacagaaaat
ggagcacaaggttttccaggtacgcttggtattcagggagaaaaaggtccacctggtgac
tcatacgatggtcctccagggacccctggatctctcggaagaagaggatcatcaggtgca
gttggagatactggaggtccagggccaccaggaaggcaagggcgtgatggagttccagga
tttcctggacttaaagggctccaaggcaatccaggcctagttggacaggccgggcctcct
ggcccacccggtttccctgcagagaaaggcgagccaggccccattgggcagcctgggcct
cccgggatacgtggaccctcaggcccatgtctgaaagggttaccaggaaatcccggacct
ttaggcccatcagggatgaagggtcttaaaggaattcctggaaatctgggaatgccgggt
tcaattggcatgcaaggccaaccaggtccgatgggcaccaatgggatccctggctttctt
ggtccagctggcaacaaagggagccaaggccttcagggatatccaggagcaacaggtcca
cgtggatttccaggaattcctggaccaccaggacaaccagggaatgatggaataagaggc
actgatggtgaccttggattaagaggaagaaaaggagaaggaggggatccaggagaaaag
tcatggccccgaatcatttatgaaaaaggcactcgaggaatattgggtgttcctggtcaa
agtggatttacaggctcaagaggtgaaaaggggcttcctgggaacccaggtatccctgga
ttgcctggcaggcttggttttccaggctccgagaaaggttttcgtgggatgaggggacca
tcgggtctttgtggacagcaagggccaatgggacaaaaaggtggaagaggcattgttgga
tttccaggaatgaagggggacaagggtgacagaggacaaccagggtcacctggacctgaa
ggaacatctggttgtaaaggacaaaaaggtgatattggtgactctattagtttgaacgga
ttgcctggaatcaaagggcagactggtgacactggagaaccaggtgtcgatggtttccca
ggtgaaactggttctcctggtatcgatggaaggccgggtgcccctgggtgcaaaggggtc
ggtggtgatctgggtactccaggtttcccaggataccaaggacctcccggagatccagga
aacccagggccaacaggattgcctggaatccaaggacaaccaggatctgcgagaccgcct
ggcccacctggtcccaaaggtcaacctggagcacctggtctacatggtctcaatggtttg
ccaggacagaaaggatctcctggacctccaggaccaagtgaaagagggtcccctggatca
ccaggatcaatggggctgaaaggtgaaaagggctctccagggcctccaggaagctccagt
cggtgcccagagggtaggaaaggacctcaaggacctgaaggccccccaggtgtacgtggg
ccaccgggacctccaggtaaaagaggaccatcttgtgatgttcaatcaactggaccacca
ggagatgaaggaccaccgggttttgatggcccaccaggtccttctggtttccccggtgac
ccagggctgccttccttaccgtttccaggggatcctggtgatccaggccgaccgggtcaa
cctggtgctcgaggtccacctggagagcaggggccatgtggccaccacggtcttccaggg
ccaccaggtccaaaaggtgtaatgggtgaccagggcttcgctggtttccctgggattgat
ggaccaccaggacttccaggtgatcgaggtgaccgtggctgtgttggtgcaccaggatct
caaggtgatccaggctcacctggtgcaatcattacagatggtgaaatggataaaagtaat
cttcaaggagacccaggggccccaggacccagtggctttccaggaccaccaggatcaact
ggagctactggcccccgtggccctcctgggaaaccaggtccaccaggaagcccaggaata
tgtcctccattctcggctgggttcttgatcgtggtccacagtcagtcacaggaggtacct
acatgtcctcaaaacatgcctcgcctttggcaaggatatagcttgatttatctggagagc
caagagaaacctcacaatcaggatcttggtctagctggctcttgtctgccaatgttcagt
actatgccatttgcatattgcagcattgatgaagtttgtcactatgctactagaaatgac
aaatcctattggctgtctaccactgcccctatccccatgatgccacttgtcgaacgagag
gtcgaagcctatatcagcaggtgctctgtctgtgaagctccttcagtcgctgtggctgta
cacagccaggaccacaccattccctcctgcccttcagggtggctcagcctttggactgga
tactcgtttttgatgcacacaggagctggtgccacaggaggaggtcagaccctggcatca
cctgggagctgtctggaggatttccgctcgacaccgttcatcgagtgtcagggggctcgg
ggcacttgccattactttactgataaatacagcttctggctgacaactgtgcaatcaagc
caccagtttgtattaaatactccttcagaaactctgaaagcagaacaattacaaagacaa
cgagtcagtaggtgtcaggtttgcctgaagcaataa
DBGET
integrated database retrieval system
