KEGG   Chiloscyllium plagiosum (whitespotted bambooshark): 122555721
Entry
122555721         CDS       T08871                                 
Symbol
polr2d
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB4
  KO
K03012  DNA-directed RNA polymerase II subunit RPB4
Organism
cpla  Chiloscyllium plagiosum (whitespotted bambooshark)
Pathway
cpla03020  RNA polymerase
cpla03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:cpla00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    122555721 (polr2d)
  09124 Replication and repair
   03420 Nucleotide excision repair
    122555721 (polr2d)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cpla03021]
    122555721 (polr2d)
   03400 DNA repair and recombination proteins [BR:cpla03400]
    122555721 (polr2d)
Transcription machinery [BR:cpla03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     122555721 (polr2d)
DNA repair and recombination proteins [BR:cpla03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      122555721 (polr2d)
SSDB
Motif
Pfam: RNA_pol_Rpb4 BIG2_C Tfb4 Maelstrom
Other DBs
NCBI-GeneID: 122555721
NCBI-ProteinID: XP_043557707
LinkDB
Position
13:complement(6285872..6290305)
AA seq 142 aa
MAACGSEARVGDVEEDASQLVFPKEFESSETLLNSEVHMLLEHRKQQNESAEDEQELSEV
FMKTLNYTARFSRFKNRETIASVRSLLLQKKLHKFELASLANLCPETAEEAKALIPSLEG
RFEDEELQQILDDIQTKRSFQY
NT seq 429 nt   +upstreamnt  +downstreamnt
atggcggcctgtgggagcgaggccagggtcggggatgtggaggaggacgcttctcagctg
gtgttcccgaaagaatttgaaagctcagagaccctgttaaactctgaggtccacatgcta
ctggagcaccgaaagcagcagaatgaaagtgcagaggatgagcaggagctctctgaagtc
ttcatgaaaacattaaactacacagccaggttcagccgcttcaaaaacagggaaaccatc
gccagtgtcaggagtctgctattacagaagaaactgcacaagtttgagctggctagtctg
gccaatctgtgtcctgagacggctgaggaggccaaagccctcattcccagcttggaaggt
cgatttgaggatgaggagctccagcaaatccttgatgacattcagaccaaaagaagcttc
cagtattag

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