Chiloscyllium plagiosum (whitespotted bambooshark): 122556215
Help
Entry
122556215 CDS
T08871
Symbol
trpc1
Name
(RefSeq) short transient receptor potential channel 1 isoform X1
KO
K04964
transient receptor potential cation channel subfamily C member 1
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cpla04040
]
122556215 (trpc1)
Ion channels [BR:
cpla04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
122556215 (trpc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRP_2
Ion_trans
Ank_2
Ank_4
LHD_TRPY1
Eno-Rase_FAD_bd
RIN1
DUF6779
Motif
Other DBs
NCBI-GeneID:
122556215
NCBI-ProteinID:
XP_043558709
LinkDB
All DBs
Position
13:complement(77602632..77696300)
Genome browser
AA seq
797 aa
AA seq
DB search
MASLYQSTESSSPNKYLTLKDVRQVKEETTIDEKLFLLACEKGDNYMVKKLLDEKFSELN
INCVDVLGRNAVTIAIENENLDILQLLLDHGCQTTDALLVAINSEVVGAVDILLNHRPRR
SSKPTIAKLMQRIQNPEYSTTMDVAPVILAAHRNNYEILTMLLKQDLSLPRPHAVGCECT
LCNAKNKKDSLRHSRFRLDIYRCLSSPSLIMLTEEDPILRAFELSADLKELSLVEVEFRS
DYEELAQQCKTFAKDLLAQARNSRELEVILNHTSSDEPIDKRGLLEERMNLSRLKLAIKY
NQKEFVAQSNCQQFLNTVWFGQMAGYRRKHTCKKILTVLSVATLWPVLSLFYLLAPKSRV
GRIIHTPFMKFIIHSASYFTFLLLLNLYSLVYNEDKKNTMGPALEMIDYLLITWITGMVW
SDVKRLWYDGLEDFMEESRNQLSFVMNSLYLATFALKIVAHNKFHAIGDRKDWDAFHPTL
VAEGLFAFGNILSYLRLFFVYTTSSILGPLQISMGQMLQDFGKFLGMFLLVLISFTIGLT
QLYDKEFSMVEGKDCSGIFCEQQSNVAFHSAQGKTSSANSGRPATANLLMFVGTCYALFW
YIFSLAHVALFVTRFSYTDDLQSFVGALIIGTYNVVVVIVLTKLLVAMLHKSFQMIANHE
DKEWKFARAKLWLSYFDDKCTLPPPFNIIPSPKTICYLFTSLNKWICSHTSAGKVKRQNS
LKEWKTLKHKRDQNYQKVMCCLVHRYLTAMRQKMHSTDQATEENLNELRQDLSKFRNEMR
DLLGFRTAKYAMFYSRN
NT seq
2394 nt
NT seq
+upstream
nt +downstream
nt
atggccagtctctaccaaagcaccgagtcctcttctccgaacaaatacctgacattgaag
gacgtgcggcaagtcaaggaggagaccaccatcgatgagaagctcttccttctggcgtgt
gagaaaggagataattacatggtcaaaaagctgctcgatgagaaattcagtgagctgaat
ataaattgtgtcgatgttctggggagaaatgcagttaccattgccattgaaaatgagaat
ctggatatcctgcagcttctcttggaccatggctgccagaccacggatgctctgcttgtg
gcaattaactctgaggttgttggtgcagttgatattcttctcaatcatcgtccccgacgt
tcatcaaagccaactatagcaaaattaatgcagagaattcagaatcctgaatactcgact
acaatggatgtggctcctgttatccttgctgctcatcgtaataactatgagatcctgacc
atgttactcaaacaggacctatcactaccaagaccacatgcagtaggatgtgaatgcaca
ctgtgtaatgcaaagaacaagaaggatagcctacgccattctaggttccgtcttgatatc
taccgctgcctgtctagtccatcgttgatcatgcttacagaggaggatcctatactaaga
gcttttgaactcagcgcagatttgaaggaactgagcctcgtggaggtggaatttaggagt
gactatgaggaactagcacagcagtgtaagacctttgcaaaagatctcctagcacaggca
cggaattcccgtgaattggaggttatcttaaatcatacatccagcgatgaacctattgac
aagagaggattgcttgaggagaggatgaacctaagccgacttaaactagcaattaagtac
aaccaaaaagagtttgtggctcagtccaattgccagcagtttctgaacacagtctggttt
gggcagatggcaggctaccggcggaagcatacctgtaagaagattctgactgttctttca
gttgccaccctatggccagtgttgtcccttttttacctgctcgcaccaaagtctcgagta
ggacgaattattcacactccttttatgaaattcatcattcacagtgcatcatactttaca
tttctactgttattgaacttatactcactggtgtacaacgaagacaaaaaaaacacgatg
ggcccagcactagagatgatcgactacctcctgattacatggataactggaatggtgtgg
tcagacgtgaagagactgtggtatgatggacttgaagattttatggaggaatctcgaaat
caactcagttttgtcatgaactcgttgtatttagcaacatttgctctcaaaattgtggct
cataataagttccatgcgattggagacaggaaggattgggatgcgttccatcccacttta
gtggcagagggtctgtttgcttttggcaacattctcagttacctacggcttttctttgtg
tacacgactagttccatccttggaccattgcagatttccatgggacaaatgttgcaagat
tttggaaagttcttgggaatgtttctgcttgttctgatctctttcaccatcggccttact
cagttgtacgataaggagttttcgatggtggaaggcaaggattgttctggaatcttctgt
gagcaacagagcaacgtagccttccattctgcccagggaaagacttcaagtgccaattca
ggtagacctgccacagctaatctgctaatgtttgttgggacctgctatgccctattttgg
tatattttctccctggcacatgtggcactgtttgtcacaagattcagttacactgatgac
ctgcaatcttttgttggagcactcatcatcggcacatacaacgtggtggttgtgattgtc
ctgactaaactgctggtggcaatgctacacaaaagcttccagatgatcgctaatcacgaa
gacaaggaatggaagtttgcccgagcaaagctgtggctgagctactttgatgacaaatgt
actttaccgccaccattcaatatcattccttccccgaaaaccatttgctatctcttcaca
agtcttaacaaatggatctgctctcacaccagcgctggaaaagtgaaacgtcagaatagc
cttaaagaatggaagactctcaagcataaacgagatcaaaattaccaaaaagtaatgtgt
tgcttggtccatcgttaccttactgcaatgaggcaaaagatgcatagcacagaccaagcg
actgaagagaatctgaatgaactgcgccaggacctttccaagtttcgcaatgaaatgaga
gaccttcttggcttcaggacagcaaaatatgccatgttctattcacggaactaa
DBGET
integrated database retrieval system
