Chiloscyllium plagiosum (whitespotted bambooshark): 122556234
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Entry
122556234 CDS
T08871
Symbol
rfc4
Name
(RefSeq) replication factor C subunit 4 isoform X1
KO
K10755
replication factor C subunit 2/4
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Pathway
cpla03030
DNA replication
cpla03410
Base excision repair
cpla03420
Nucleotide excision repair
cpla03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
122556234 (rfc4)
03410 Base excision repair
122556234 (rfc4)
03420 Nucleotide excision repair
122556234 (rfc4)
03430 Mismatch repair
122556234 (rfc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cpla03032
]
122556234 (rfc4)
03036 Chromosome and associated proteins [BR:
cpla03036
]
122556234 (rfc4)
03400 DNA repair and recombination proteins [BR:
cpla03400
]
122556234 (rfc4)
DNA replication proteins [BR:
cpla03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
122556234 (rfc4)
DNA Replication Termination Factors
ELG1-RFC complex
122556234 (rfc4)
Chromosome and associated proteins [BR:
cpla03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
122556234 (rfc4)
DNA repair and recombination proteins [BR:
cpla03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
122556234 (rfc4)
Check point factors
HRAD17(Rad24)-RFC complex
122556234 (rfc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
RCF1-5-like_lid
Rad17
AAA_lid_RFC1
AAA_assoc_2
AAA_11
AAA_16
AAA_22
AAA_30
Mg_chelatase
DUF815
SLFN-g3_helicase
AAA_14
AAA_24
AAA_19
RuvB_N
AAA_28
Gp44_lid
ResIII
VipD-like_C
AAA_5
AAA_7
Motif
Other DBs
NCBI-GeneID:
122556234
NCBI-ProteinID:
XP_043558768
LinkDB
All DBs
Position
13:80283671..80326683
Genome browser
AA seq
360 aa
AA seq
DB search
MQAFLKGPGVNSSKPAKEKAAAGTSGENKKQKPVPWVEKYRPKCVSEVAFQEEVVAVLKK
SLEGADLPNLLFYGPPGTGKTSTILAAARELFGPDLYRKRILELNASDERGIQVVREKVK
TFAQLTVAGSRSDGKPAPPFKIVILDEADSMTNAAQAALRRTMERESKTTRFCLICNYIS
RIIEPLTSRCSKFRFKPLTDDIQLKRLLAICAKENIQCSDETLALLINVSEGDLRKAITY
LQCATRLTAGKGITEQVIIEIAGVVPSEIIDSLLAACHSSSFEKLETVVKNMINEGYAAT
QLINQLHDVIIDKEDLNDQQKSAITLKLAEVDKCLIDGADEYLQMISLSAVIMQQFTQTT
NT seq
1083 nt
NT seq
+upstream
nt +downstream
nt
atgcaagcttttttaaaaggacctggagtaaacagctcaaaaccagcgaaagaaaaagct
gcagcaggaaccagtggagagaacaaaaagcaaaaaccagttccatgggtggagaaatac
cgtccaaaatgtgtctccgaagtggcctttcaggaggaggttgtggctgtgctaaaaaag
tcactcgaaggagcagatcttcctaacttgcttttttatggacctccaggcacagggaaa
acttccacaatacttgctgcagcaagagaactctttggcccagatctttaccggaagaga
attcttgagctaaatgcctccgatgaacgtggtatccaggttgttcgagaaaaagtgaaa
acttttgcacaattgactgtagctggctctcgctcagatggaaagcctgctccaccgttt
aaaattgtcatcttagatgaagccgattccatgacgaatgctgcacaagctgctcttcgc
cggacaatggaaagagaatcgaaaaccacccgcttctgcctcatctgtaactacatcagc
aggataattgaaccactaacatctcgatgttcaaagttccgttttaaacctttgactgat
gatatacagctgaaaaggttgctggccatctgtgcgaaggagaatatacagtgcagcgat
gaaaccctcgctctgcttatcaatgtgtctgaaggagatttgaggaaggcaataacttat
ctgcagtgtgcaacaagactcacagcaggaaaaggcatcacggagcaagtcatcattgaa
attgctggggttgtgccatcggaaataattgacagtttgttagctgcttgccatagcagc
tcctttgaaaaactggaaactgtagtaaaaaatatgattaatgaaggctatgctgcaaca
cagttaatcaatcaactacatgacgtcattattgataaagaggatcttaacgatcaacag
aaatcagcgatcacgctaaaactggcagaagttgacaagtgtttaatcgatggcgctgat
gagtatctgcagatgatcagtctttctgcagttattatgcaacagtttacacagaccact
taa
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