Chiloscyllium plagiosum (whitespotted bambooshark): 122556243
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Entry
122556243 CDS
T08871
Name
(RefSeq) collagen alpha-5(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Pathway
cpla04382
Cornified envelope formation
cpla04510
Focal adhesion
cpla04512
ECM-receptor interaction
cpla04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
122556243
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
122556243
09142 Cell motility
04820 Cytoskeleton in muscle cells
122556243
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
122556243
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cpla04147
]
122556243
00536 Glycosaminoglycan binding proteins [BR:
cpla00536
]
122556243
Exosome [BR:
cpla04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
122556243
Glycosaminoglycan binding proteins [BR:
cpla00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
122556243
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
122556243
NCBI-ProteinID:
XP_043558795
LinkDB
All DBs
Position
13:complement(80625986..80903927)
Genome browser
AA seq
1647 aa
AA seq
DB search
MTRLKSALHCILVILSTVTLTETACTCSGKSKCHCDGVKGTKGERGFPGAQGPPGIPGFP
GTEGPRGPEGPKGNPGFPGPPGMKGLRGPTGLPGHPGNPAVPGIPGKDGPQGPKGIPGCN
GTKGDPGFPGIPGSEGFTGLQGHSGLPGQKGESAQIVPLYPGDKGSHGPPGHPGPPGQPG
LPGRPGPTGPPGPLGPSGPTGHPGPKGNMGLFFVGSKGDKGVKGRPGPVYRPERGPTITV
KGQKGSPGPPGDPGFPGLPGLPGSVTPGWKGDKGERGDPGALGKPGKDGNPGIPGIQGLK
GDPGFLGFPGRNGAPGIKGEVGCQGPPGPQVEGDDSCDKGERGDPGATGPKGRPGLQGAA
GQPGLPGEQGISRRGPKGQSGYPGQRGPKGDKGDPGQVYEGPSGPPGFPGPPGPPGPVGP
QGETISINGQPGPRGSPGPRGFVGFRGPSGYKGDKGDLCVTCRGTSQPGPPGPPGLPGIP
GREALPGPKGIPGPSGQFGRTGSPGSLGSPGFRGPPGLDGDPGIGGGQGSKGDKGDSGLQ
GNTGRQGKDGIPGQPGPQGPQGIKGDPTPFSPKGDRGPQGVPGNPGIPGAMGPPGSPGFG
PLGIQGLKGNRGVPGFRGVDGVPGEKGDRNNESAIPGPIGLRGETGAPGPVGFPGSSGPP
GRDGSPGPPGEKGETGNSMKGSTGPPGPKGNPGHPGVLGPPGIPGRSGAPGTPGLPGVTG
PKGDGRFGQPGNRGPPGPAGNIGPPGEKGNSGPPGLPGEEGRPGRNGLQGPQGDLGCPGI
QGPTGPRGQPGKGIPGPAGSEGPPGPPGPQGTTTRGPTGDPGILGVGIPGIPGAPGSVGT
PGLSGPPGPRGSPGNPGRPGIPGRPGPKGEPGVMGEPGNPGLTGEQGFQGSAGEKGSKGQ
PGPKGKEGAIGQIGQKGEKGMKSVMYNITVKGIMGDPGLQGSQGITGPRGETGCPGGPGH
KGKDGAPGPPGPAGPPGDPGLPGNPGNPGFPGALGSTGPMGLPGDKGERGFAGPPGFSAS
PGSDGIPGLKGEKGEPSRLVYGNSGRPGEKGNQGPSAPKGQPGTPGSRGKPGTDGPPGNP
GEKGDQGQSGYPGPAGCKGSEGLVGKRGLPGSQGVPGTPGMPGRPGPPGLTGAKGRQGLD
GIPGPHGLKGDPGLPGRGHKGQPGPYGQSGTKGNSGPPGDESEVGPPGPRGDPGHPGPSG
LSGEPGPPGPAGMSIQGPKGNRGPQGAPGPAGPRGLKGLLGQPGPECLKGDKGSSGLSGF
QGNPGDRGDPGEQGQPGIPGTSAQGPKGERGSTGTPGFPGLQGDKGVKGQTGDAGLSGLP
GQPGPEGLPSVMPTTPLKGDSGLPGPQGSEGQSGTPGSPGPPGCIGSQGPTGSLGRNGPP
GGMGRPGSKGSPGFPGLQGPKGYPGPQGQEGDRGHPGPTGTDIQSFVFTRHSQTTEIPLC
PGNTKQLYIGYSLLYVQGNKRAYGQDLGAAGSCLPRFSVMPFLFCDVNDVCNYASRNDYS
YWLSTSRQMPMDMAPISGKALKPFISRCTVCESPAMVLAVHSQTIQIPPCPRGWKSLWIG
YSFVMHRSSGAEGSGQALASPGSCLEEFRVAPFIECHGRGTCNYYVNTYSFWLATLDPSQ
MFRKPRPQTLKAGELRSIISRCQVCTK
NT seq
4944 nt
NT seq
+upstream
nt +downstream
nt
atgaccaggctgaagtcagctctccactgtattctggtcatcctgtctaccgtgaccctg
acagagacggcctgtacatgcagtggtaaatcaaaatgtcactgtgatggagtaaaaggc
actaagggcgaaagaggtttccctggtgcacagggtccaccgggaattccaggatttcca
ggtacggagggtcctcgaggtccggaaggtcctaagggaaatcctggatttccaggacct
ccaggcatgaagggtttgaggggacctacaggtttaccaggccatccaggaaaccctgct
gtgccaggtatccctggaaaagatggtcctcaaggtcctaagggcataccaggatgcaat
ggcacaaagggtgatcctggttttccaggaattcctggctcagaaggatttacaggactt
caaggacattcagggcttccaggacaaaagggtgaatcagctcaaattgtaccgttatat
ccaggggacaaaggaagccatggaccaccaggtcacccaggacctccaggtcaaccagga
cttccaggacgaccaggacccactgggcctccaggtcccttgggtccatcaggaccaact
ggtcatccagggccaaagggcaacatgggattattctttgtgggttccaagggtgacaag
ggtgtgaaaggtcgtcctggtcctgtttatcggccagagcgtggtcctaccatcactgtg
aaaggacagaagggcagtccaggaccccctggagacccaggatttccaggtctcccaggt
ttaccaggctctgtcacacctggatggaagggagataaaggagaacgaggggacccaggg
gccctggggaaaccaggtaaagatgggaatcctggaatcccggggatccagggattgaaa
ggtgatccaggttttttgggatttccaggaagaaacggagcaccaggaattaaaggggaa
gttggctgtcaaggaccgcctggtccacaagttgaaggagatgattcctgtgacaaagga
gaacgtggcgatccaggtgctacaggacccaaaggacgaccaggattacaaggtgctgcg
ggtcagccaggtttaccaggagagcaaggaatttctagacgtggccccaaaggccaatcc
ggatatcctggacaaagaggtcccaaaggggataaaggtgatcctgggcaggtttatgaa
ggtccttcaggtcctcctggatttccaggccctccaggcccaccaggccctgtgggtcca
caaggtgagactatcagtataaatggccaaccaggacctagagggtcaccaggaccaaga
ggttttgttggttttcgtggtccaagcggatacaaaggtgataaaggtgacctgtgtgta
acgtgccgtggaacttcacaacctggtcctcctggtccacccggccttcctgggatacct
ggcagggaggcattaccaggcccaaaaggaattcctggtccttcaggtcaatttggaaga
acaggttccccgggttctctgggatccccaggatttagaggaccaccaggcttggacggt
gaccctggaatcgggggtggccaaggttcaaaaggggacaaaggtgactctggtttgcaa
ggaaatacaggaaggcaaggaaaggatggaatacctggtcaaccaggaccacaaggaccc
caaggaattaagggtgacccaacaccattttcaccaaaaggtgacagaggtccacagggt
gtccctggaaaccctggtatcccaggagctatgggccctcctggttcacctggctttggg
cctctaggtattcaagggctcaaaggaaatcgtggtgtacctggatttcgaggagttgat
ggtgtcccaggtgagaaaggagacaggaataatgagtccgcaatcccaggcccaattggg
cttcgtggtgaaacaggagctcctggaccagtgggtttcccaggtagctctggacctcca
ggtagagatggttccccaggtcctccaggagaaaagggagaaacaggaaattcaatgaaa
ggatcaactggtcctccaggtcctaaaggaaacccagggcatcctggagtattgggtcct
ccagggattccaggaaggtcgggagcacctggaacaccagggctgccaggagtcactggt
cctaagggtgacggacgttttggacagccaggaaatcgtggtccaccaggtcctgcagga
aacattggaccaccaggggagaagggtaattcaggtcctcctggattgcctggagaagaa
gggcgtcctggtcgcaatggtcttcaaggtccacaaggtgatctcggatgtcctggtatt
caggggccaacaggcccacgtggacaaccaggtaaaggaatacctggacctgcaggttct
gaaggcccgcctggtccacctggtccacaaggaacaacaactagagggcctactggagat
ccaggaattctgggagtgggtattccaggcatccctggtgctcctggatctgttggaaca
ccaggcttgtcaggccctcctggaccaagaggttctccagggaatccaggtcgaccagga
ataccagggagaccaggtccaaaaggtgaacctggtgttatgggagagccagggaatcca
gggctaactggtgaacaaggatttcaaggctccgcaggagagaaaggttctaaaggtcag
ccaggaccaaagggtaaagaaggtgcaattggtcagataggtcaaaaaggtgaaaaagga
atgaaatcagttatgtataatataacagtaaaaggtatcatgggagaccctgggctacaa
ggttcgcaaggaataacaggaccaagaggtgagactggttgccctggtggaccgggtcac
aaaggtaaagatggagcaccaggacctccaggtccagcaggcccaccaggtgatccagga
ttaccagggaatccaggcaatccagggtttcctggagctcttgggtctactggtccaatg
ggtttgccaggtgacaaaggagaaagagggtttgctggaccaccagggttttcagcttca
cctggttctgacggtatccctggcctaaagggagagaaaggagaaccaagcagattagta
tatggcaactcaggccgtccaggagaaaagggtaatcaaggtccttcggcccctaaagga
caacctggtactcctggatctcgaggtaaaccaggaactgacggtcctcctgggaaccct
ggtgagaaaggtgaccagggccaatcaggttatccaggtcctgcaggctgtaaaggcagt
gaaggacttgttgggaaacgaggcttaccaggaagtcaaggtgtcccaggaaccccagga
atgccaggacgccctggtccaccaggattaacaggtgcaaagggcaggcaaggacttgat
ggcattccaggacctcatggactgaagggagatccaggtttacctggaagaggacataaa
ggccaaccaggcccatatggacaatcaggtaccaaaggaaattcggggcctcctggtgat
gagagcgaagtaggtcctcctggtccacgaggtgaccctggtcatcctgggccttctggt
ctgtctggtgaacctggcccacctggtcctgcaggaatgagtattcaaggtcccaaagga
aacagagggcctcaaggcgctcctgggcccgcaggtcctcgtggactgaagggattactt
ggacagccaggaccagaatgtctgaagggggataaaggatcatctggtctctcaggattt
caaggcaacccaggtgacaggggtgatccaggtgaacaaggacaaccaggaattccaggc
acatcagctcaaggtcccaaaggagagaggggttcaactggaactcctgggttcccaggt
ttacaaggtgataaaggagtcaaaggccagactggagatgcaggattgtcaggattgcct
ggacaaccaggtccagaagggttgccatctgttatgccaacaacacctctaaagggcgat
tccggactcccgggtccacaggggtctgaaggacaaagtggaactcctggatctcctgga
ccacctggatgcatcggtagccaaggtccaactggttcacttggtcgtaatgggcctcct
ggtggtatgggacgtccaggatcaaagggctcaccaggatttcctggactacaaggacca
aaaggctatccaggtccccaaggacaggaaggagacaggggtcaccctggaccaacagga
acagatatccaaagttttgtttttacacgtcatagtcaaactacagagatacctttgtgc
ccaggcaacactaaacagctatacattggttattctctcctctacgtgcaaggtaacaaa
cgtgcatatggacaagatttaggagctgctgggagttgcttgccaagattcagtgtcatg
ccatttttgttctgtgatgtaaatgatgtctgtaactatgcatcaagaaatgactattct
tattggctatcaacttcaagacaaatgccaatggatatggctccaatcagtggaaaagcg
ctgaaaccatttataagcagatgtactgtttgtgaaagtcctgcaatggtcttagctgtt
catagtcaaactattcagatcccaccatgcccaaggggctggaagtctttgtggataggc
tattcttttgtaatgcacagaagctcaggtgcagagggatcaggccaagcactggcttca
cctggctcctgtttagaagaatttcgtgttgccccctttattgagtgtcatggaagggga
acatgcaactattatgtaaatacctacagtttttggctggcgacgttagatccctcacag
atgttcaggaaacccagaccacaaacgctaaaggcaggagaattacgatccataataagt
cgttgtcaagtctgtacaaagtaa
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integrated database retrieval system
