Chiloscyllium plagiosum (whitespotted bambooshark): 122556308
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Entry
122556308 CDS
T08871
Symbol
her6
Name
(RefSeq) hairy-related 6
KO
K06054
hairy and enhancer of split 1
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Pathway
cpla03460
Fanconi anemia pathway
cpla04330
Notch signaling pathway
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
122556308 (her6)
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
122556308 (her6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cpla03000
]
122556308 (her6)
03400 DNA repair and recombination proteins [BR:
cpla03400
]
122556308 (her6)
Transcription factors [BR:
cpla03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Hairy, Hairy/E(SPL)
122556308 (her6)
DNA repair and recombination proteins [BR:
cpla03400
]
Eukaryotic type
DSBR (double strand breaks repair)
FA (Fanconi anemia) pathway
FA core complex binding factors
122556308 (her6)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hairy_orange
HLH
Spectrin_1st_PEPL
RseA_C
bHLH_NCOA
Motif
Other DBs
NCBI-GeneID:
122556308
NCBI-ProteinID:
XP_043558871
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All DBs
Position
13:44842341..44844452
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AA seq
310 aa
AA seq
DB search
MPADIMEKASSSPVAATPASLNATPDKPKTASENRKSSKPIMEKRRRARINESLSQLKTL
ILDALKKDSSRHSKLEKADILEMTVKHLRNLQRVQMTAALSTDPTVLGKYRAGFSECMNE
VTRFLSTCEGVNTEVRTRLLSHLANCMSQINAMNYSQAAPSPAVSGSSHAAFGQPLHVQL
PGSGGSGMPLNGVNMPCKLAAAEAMPAAAKVYGGFQLVPASDGQFAFLIPNTAFGPNGQL
TAGPVIPLYANANVSALPSALSPASRSPVQQPAITPVAGFPLPLSAATTAVSPVSVNGPT
DSSDSVWRPW
NT seq
933 nt
NT seq
+upstream
nt +downstream
nt
atgccagcagatatcatggagaaagcgtcctcctcccccgtggctgccaccccagctagt
ttaaacgctacgccagataagccaaaaacggcttctgaaaatcggaagtcatccaaacca
attatggagaagcggcgccgggctagaatcaatgaaagcttaagtcaacttaaaactcta
atcttggatgcgctgaagaaggatagttccagacattcaaagttagaaaaagctgacatc
ctggaaatgacagtgaaacatcttcgaaatctgcagcgtgtccaaatgactgctgctttg
agtacagacccaacagttctgggcaaataccgagcgggtttcagtgagtgcatgaacgaa
gtgacccgattcttgtctacctgcgaaggggttaacacagaagtccgaaccagactgctc
agtcacttggcaaactgcatgtctcagatcaacgccatgaactacagccaggcggccccc
agcccagctgtgagcggcagctcccacgctgcttttggacaacccctccacgtccagttg
ccgggatcaggaggcagcggcatgcccctgaacggagtcaacatgccttgcaaactggcg
gctgctgaggcgatgcccgctgcagcgaaggtctacggcggtttccagcttgtgccagcg
tcagacggccagtttgccttcctcattcccaacacggcgtttggacccaatggacagcta
acggcaggaccggtcatccctttgtatgccaatgccaacgtgagcgcgttgccctccgcc
ctgtctccggccagcaggtccccagtacaacagcccgctatcaccccagtagccggcttc
ccgcttccactctcggctgccaccactgcagtcagtccggtcagtgtgaatggaccgaca
gattcctcagattccgtctggagaccttggtaa
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