Chiloscyllium plagiosum (whitespotted bambooshark): 122556500
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Entry
122556500 CDS
T08871
Symbol
rad50
Name
(RefSeq) DNA repair protein RAD50 isoform X1
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Pathway
cpla03440
Homologous recombination
cpla03450
Non-homologous end-joining
cpla04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
122556500 (rad50)
03450 Non-homologous end-joining
122556500 (rad50)
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
122556500 (rad50)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cpla03032
]
122556500 (rad50)
03400 DNA repair and recombination proteins [BR:
cpla03400
]
122556500 (rad50)
DNA replication proteins [BR:
cpla03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
122556500 (rad50)
DNA repair and recombination proteins [BR:
cpla03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
122556500 (rad50)
BRCA1-C complex
122556500 (rad50)
NHEJ (non-homologous end-joining)
MRX complex
122556500 (rad50)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
Rad50_zn_hook
AAA_21
AAA_15
SbcC_Walker_B
SMC_N
DUF1664
AAA_29
AAA_24
AAA_16
Motif
Other DBs
NCBI-GeneID:
122556500
NCBI-ProteinID:
XP_043559134
LinkDB
All DBs
Position
14:13086674..13302874
Genome browser
AA seq
1320 aa
AA seq
DB search
MSKIEKMSIQGVRSFGIDDKSKQVIAFYTPLTVLVGPNGAGKTTIIECLKYICTGDFPPG
TKGQTFVHDPKVAHETDVRAQIRLQFRDVNGGVVAVQRSMLCTQKGKKTEFKTLEGVITR
MKHGEKVSLSSKCAEMDREMISALGVSKAVLNNVIFCHQEESNWPLSEGKALKQKFDEIF
SATRYIKALETLRQVRLKQSQSVREYQAELKYLKQNKEKAHTIRGQLEDKETQLAALKEN
VHAFENQIAPLEEHLSQIDRNLGKVMKLDNDIKALESRRKQMEEDNHELEEKMEQLFQGT
DEQLRDKYLNHQRTVIEKERRLTDHQRELDRVNQRCQKLNRQKSEMLVEQGRLQLQADRQ
QENIKKRDSLVHSLARHLELDGYERAPFSDRQYDSFCRQIAARLGSEEESANQLMGEYAA
KEATKQRQIDELRDTKTGLERTIELKSGIQRKRQDELKNVKLELQQLEGSSTRLQELDQE
LNKAEHDLDRAERGSNVDSLKAELANLLNEKGALDKSLKKLDQEMEMLNLHTTARTQMEM
LKKDKADKEEQIRKIKSRRNEELVLLLGHFPNKRQLEDWLHTKATEINQTRDKLFKMNKD
LASADQNKNHTSTALKTKEQQLSTYEEKLFDLCGGQDFESDLYKLQDDIEKTSKQRAMLS
GATAVYSQFIGQLTEETEPCCPVCQRVFPSEAELQDIINDLQSKLRLVPDKLKSAESELK
KKEKRRDEMMGLKPIRETVIELKEKDLPELRNKLQSINREIQHLKKEMEEQETLLAAFLS
EEGTAKACLQDISLMERYQMELKDVERKIAQQAAKLQGIDVNRTMQQVNQEKQEMQLQVE
TVCNKIELKRKMIQDHQEQIQLLKSIVNEVRAEKLQIASNMQRRQQLEEQSAEFSTEVQS
LHREIKESKEQLPPLAAALDKLQQEKQDLIERKNKSYKEMQDKINEIKEKIKNIDAYARE
IEKYIKDRRDEHKEQKESELQDTITQLSEAEKQRDKIHKDMEATRKDIDTQKLEERWLQD
NLTLRKRMEELNVVESKRKELLKEMGEMKVMHLRNERKQLEERLEGFKKNRNLAQGRQKG
FEEEILHFRKELREPQYRDAEEKFREMMIVMRTTELANKDLDIYYKALDQAIMRFHSMKM
EEINKIIRDLWRSTYRGQDIEYIEIRSDADENVSASDKRRNYNYRVVMVKGDTALDMRGR
YSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDRENIESLAHALVDSWILSSDGP
VRGDTPALPQNTTTVQAFEGLQGENSRQLVLQTVLPCKLISTDSVLSTGCVWALIDKKPN
NT seq
3963 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaaattgagaagatgagtattcaaggtgtgaggagctttgggatagatgacaag
agcaagcaggttatcgccttctacactccattaactgttctggtgggaccaaatggcgct
ggcaaaacgacaataatcgagtgcctgaagtatatttgtacaggtgacttccctcctgga
actaaaggacaaacgtttgtgcatgacccaaaggttgcccatgagactgatgtacgagca
caaatccgcctacaatttcgagatgtgaatggaggagttgtggctgtgcagaggtcaatg
ctttgcacgcaaaaaggaaaaaagactgagtttaaaacactggagggggtgatcacacga
atgaagcatggggagaaggtcagcttgagctcaaaatgcgcagagatggaccgtgagatg
atcagtgcattgggtgtctcgaaagctgtgttaaacaatgtcattttctgtcatcaagaa
gagtcaaactggcctttgagcgaaggaaaagctctgaaacagaaatttgatgaaattttc
tcagccaccagatatattaaagccctggaaacgttacggcaagtccgtctgaaacagtca
cagtcagtccgggagtaccaagcagagctcaagtacctgaaacagaacaaagagaaagcc
cacacgattcggggtcaactggaagacaaagaaacccagctggctgctttgaaggagaat
gtccacgcgtttgaaaatcagattgcccctttggaggaacacttgtctcaaattgaccgg
aacctgggtaaagtgatgaagcttgacaatgacatcaaagcccttgaaagcaggagaaaa
caaatggaggaggacaaccatgaactggaggagaaaatggagcagctattccagggaact
gatgagcagcttcgggacaagtacctcaatcaccagaggacagtgattgaaaaagagaga
cgactgactgatcatcagcgtgagcttgatcgggtaaaccagaggtgccagaaactcaac
cgacagaagtcagagatgctggttgaacagggacgacttcagctccaggcagatcggcag
caggagaacatcaaaaaacgcgattctttagtccactctctagcaaggcatcttgaactg
gatggttatgaaagggcaccattcagcgatcgccagtatgatagtttctgtcgtcaaatc
gcagctagattaggcagtgaggaagaatcggccaaccaactgatgggagaatatgcagca
aaagaagcaaccaagcagcggcagattgatgagcttagagatacaaagacaggactggag
cgaacaattgaacttaagtcgggcattcagcgaaagagacaggatgagctgaagaatgtt
aagttggaactccagcaactggaagggtcttccactaggttgcaagaattggaccaggaa
ctcaacaaagcggagcatgacctcgaccgtgcagaaagaggcagcaatgtggacagcctg
aaggctgaactggcgaatctgctaaatgagaagggagcactagacaagtccttgaagaaa
ctcgatcaggaaatggagatgttaaacttgcacactacggccagaactcagatggaaatg
ctgaaaaaagacaaggctgacaaagaagaacagatcaggaagattaagtcaaggcgcaat
gaggaattggtcttgctgttggggcatttcccaaacaagagacaactggaagattggctt
catacaaaagccacagagatcaatcagaccagagataaactgtttaagatgaataaggat
ttggcatcagcagaccagaacaaaaatcacacaagtactgcactgaaaacaaaagaacag
caactctctacctacgaggaaaaacttttcgacttgtgcggaggccaggattttgagagt
gacctgtataaacttcaggatgacatcgaaaagacatcaaagcaaagagctatgctttct
ggagcgacggctgtctacagtcaatttattggccagttaacagaggaaactgaaccctgc
tgtcctgtctgtcagcgcgttttcccctccgaggctgagttacaggacatcatcaatgat
ctacagtcaaaactgcggcttgtcccggataaacttaaatcagctgagtctgagctgaag
aagaaagagaaacgtcgtgatgagatgatgggactgaaaccaatcagggaaactgttatt
gaacttaaggaaaaggatttgccagaactacgcaataaactccagagcatcaatcgagag
attcagcacctgaagaaggaaatggaggaacaggagactcttcttgctgccttcctgtct
gaggaaggcactgcaaaagcgtgtctgcaagatatatcgctcatggagagataccagatg
gaattgaaagacgttgaacgaaagattgcccagcaggctgccaagcttcagggaatagat
gtgaaccgaaccatgcagcaggtcaaccaggagaagcaagagatgcaacttcaagtggag
acagtgtgtaataaaatagaactgaagcggaaaatgattcaagatcaccaagagcagatc
cagcttctgaagagtattgtcaatgaggtccgggcagaaaaactccaaatcgccagcaac
atgcagcgacgtcagcagctggaagagcagagtgctgaattttccacagaggttcagtcc
ctacaccgagaaataaaagaatctaaggaacagttacctccactagctgcagctctggat
aaactacagcaagaaaagcaagatctgatagaaaggaaaaataagagctacaaggagatg
caagataagataaatgaaataaaagaaaaaatcaaaaatattgatgcttatgcaagagaa
attgagaagtacatcaaggacagaagagatgaacacaaagagcaaaaagagtccgagctt
caagataccattactcagctcagtgaagctgaaaagcaacgagacaagatccataaagat
atggaggcgacacggaaggacatcgatacacagaaacttgaggagcgctggttgcaggat
aacttgacgttacggaagaggatggaagaattgaatgtcgtggagagcaagaggaaggag
cttttaaaagagatgggagagatgaaagtaatgcatctcagaaatgagcggaaacagctg
gaagaacgactggagggcttcaagaaaaatcgcaacctggctcaagggcggcagaaaggt
tttgaggaggaaatacttcatttcagaaaggaactgagagaacctcagtatagagacgct
gaggaaaagttccgagaaatgatgatcgtaatgagaacgacggaactggctaacaaggac
ctggatatttattacaaggcactagaccaagccataatgcgattccacagcatgaagatg
gaagaaatcaacaaaattatccgtgacctgtggcgaagcacttatagaggtcaagatatt
gaatatattgagatccgttctgatgctgatgaaaatgtgtcagccagtgacaaaaggagg
aattataattaccgtgtagtaatggtgaagggagacacagcactggacatgagaggaagg
tacagcgctggacaaaaggtccttgcttcactcattatccgtctggctctggctgagacc
ttctgcctgaattgtggaatccttgcactggatgaaccaaccacaaacttagaccgagag
aacattgaatccttggctcacgccctggtcgactcatggattctgtcttcagatggacct
gtcagaggtgacaccccagctctgcctcaaaataccaccactgtccaggcatttgaggga
ctgcagggagagaactcaaggcaattggttttacagacagtactaccttgcaagctcatt
tcaactgatagtgttctcagcactgggtgtgtctgggcacttatcgacaagaaaccaaac
tga
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integrated database retrieval system
