Chiloscyllium plagiosum (whitespotted bambooshark): 122556681
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Entry
122556681 CDS
T08871
Symbol
htt
Name
(RefSeq) huntingtin isoform X1
KO
K04533
huntingtin
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpla03019
]
122556681 (htt)
04131 Membrane trafficking [BR:
cpla04131
]
122556681 (htt)
03029 Mitochondrial biogenesis [BR:
cpla03029
]
122556681 (htt)
Messenger RNA biogenesis [BR:
cpla03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
122556681 (htt)
Membrane trafficking [BR:
cpla04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
122556681 (htt)
Mitochondrial biogenesis [BR:
cpla03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
122556681 (htt)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Htt_C-HEAT
Htt_N-HEAT
Htt_bridge
Htt_N-HEAT_1
HEAT
HEAT_2
HEAT_GCN1
HEAT_EF3_N
Vac14_Fab1_bd
CLASP_N
Motif
Other DBs
NCBI-GeneID:
122556681
NCBI-ProteinID:
XP_043559648
LinkDB
All DBs
Position
2:complement(10179236..10420480)
Genome browser
AA seq
2932 aa
AA seq
DB search
MATMEKLMKAFESLKSFQQGPSSEEPGQKLKKESATTKKDRVTHCLTICENIVAQSLRNS
PEFQKLLGIAMEMFLLCCDDAESDVRMVADECLNKIIKALTDSNLPRLQLELYKEIKKNG
PPRSLRAALWRFAELAHLVRPQKCRPYLVNLLPCLARISKRSEESVQETLASAVPKIMMA
LGNFANDSEIKMLLKTFIGNLKSSSPTIRRTAASSAVSICQHSRKTQYFYTWLLNVLLGF
MVPVEEDRPTPLILGVMLTLRYLMPLLRQQVKDTSLRGSFGVTRKEAEISPSLEQLIQAY
ELTLHYTQHRDHNVVTAALEMLQQLFRTPPPELLRALTTSGSITRVSIARDDVSNRVRSG
SIVELIAGGGSSGSPLVLRKHKGKMVSGEEDGLEDDPETRSEVSIATFPGSMNSEGAVEV
PSPSGVSNLESTSPIPDTAGHDIITQQPRSQHTLQTAESVDLNSSATSDLIGLAVEGEVD
EALSQSSSQISTIQSDTNVDQNDRTNQAISPLSESSQTTEGPDSAVTPSDSSELVSVQRA
EGGSQSSTEGPDISHSSPMEGSDLDTTTFSTSSSASSSDKVLDGTDSQYSAMQIGQLQDE
EEDTSNTPGDVLLDSFTTSTLAVNKSHLLSHMGHSRQSSDSSVDRFVSKDDCVESADLDT
KPCRVKGDIGHYTDENAAPLVHCVRLLSASFLLMGQKNGLIPDREVRVSVKALAVSCVGA
AIGLHPEAFFIKLYRTPLEVLESQEEQCISDILKYVDHGDPQIRGATALLSSTFIHSVLT
KTRFNPENWLATVRGTTGHGVSLEDCVPLLQKTLKDKSSVTCKLACAAVRHCITSLCNSS
YSELGLQLMIDLLTLKNNSYWLVRTELLETLAEVDFRLVGFLERKTVELHRGQHHYTGML
KLQERAVNDVIIHLLGDEDPRVRHVAATTLVRLIPRLFFDCDQGQSDPVVAVARDQSSAY
LQLLMHETQSPSHFAVSTITRTYRGFNISQSTTDVTIENNLSRVITAVSHALTSSTSRAL
ILGCCEALSLLSLNYSVCNWSIGWHCGYTTSGSQASRVHLYKNRGRSFSLSQNSPTDELR
KSCTVGMVNMILSLLSSAWFPLDLSSHQDALILSGNLLAAIAPKSLKNPWGNEDDSTTTK
PEEPWPALADRTLVVMVEQLFSHLMKVINICAHVIDDVAPGPAMKATLPSLANTPSLSPI
RRKGKERESAEQATAPMSPKKITESNPAARPTDAVGAAPTSKSTSLGSFYHLPPYLKLHD
VLKATYANYKVTLDLQNNNEKFGSFLRGALDVLSQLLEIATLPDIGKCVEEILGYLKSCF
CREPMAATVCVQQLLKTLFGTNLASQYDGSSSNPNKSQGKVQRLGSSNLRPGLYHYCFMA
PYTHFTQALADASLRNMVQAEPEQDTSGWFDVLQKVSSQLKVNLTNVTRHRADKESIWHS
VDVLHNAIHNYIRLFEPLVIKALKQYTTTTSVHLQRQVLDLLAQLVQLRVNYCLLDSDQV
FIGFVLKQFEYIEVGQFRESEAIIPNIFFFLVLLSYERYHSKPIIGIPKIIQLCDGIMAS
GRKAVTHAIPALQPIVHDLFVLRGTNKADAGKELDTQKEVVVSMLLRLIQYHQICNKHLE
MVLEMLILVLQQCHKENEDKWKRLSRQIADMILPLLAKQQMHLDSHEALGVLNTLFETVA
PSSLRPVDMLLKSMFAMPCTLASVGTVQLWISGILAILRVLISQSTEDIVLSRVQELALS
PYLISCQNIALLRDRGNQTVPPEEQNEEAQSKHLPEETFARFLLQMVGILLEDIVNKQLK
VDMSEQQHSFYCQQIGTLLMCLIHIFKSGMFRRITAAATRLIVGNGFDGSFYTLESLNAL
VQSIIPTHPSLVLLWCQILLLVNYTNYSWWSEVHQTPKRHSLSSTKLLSPQISENEDSKS
VSKLGVCNREIVRRGALILFCDYVCQNLHDSEHLTWLIVNHVQDLINLSHEPPVQDFISA
VHRNSAASGLFIQAIQSRCDNLATPTMLKKTLQCLEGIHLSQSGAVLMLYIDKLISTPFR
VLARMVDTLACRRVEMLLAESLQNSVAQVPREELERLQRYLQTTCLAQRHQRLYSLLDRF
RITVAADTVSPSPIVTSHPLDGDKLSCIESITVDKDWYISLVKWQCCSKLNTALMECTEL
LDKLPEDDLHSVMTAKEFNLNLLKPCLAFGLRAISADQTSVLFETARQITLDQVAFHVQH
LPDNHRVFQRLCPSPNSSYWSKIGELYGDMQFYHSVISLCNALAQYLLSLPKLLPSLQIP
TEKEADIASFMVLSLEALCWQLMHDQVPLSLDLQAALDCCCLVLQQPDIWNLLASVAYVT
QACSVINCIRFIIEAMAVEPGEQLLLHEERRKSNSDESTVMDEESEDMFDRPKCITKACD
VMTEMVECLQTVLCFGHSNNARIPAFLNPTLRNIGISLARLPLVNGYTRTPPLVWKLGWS
PQTGGEFGTTLPEIPVEFLQEKEVFKEFIYRINVLGWTSRTQFEETWATLLGVLVTQPLA
MDQEEEVPQEEDTERTQINILAVQAITSLVLSAMSIPVAGNPATSCLEHQPRNKALKALD
TRFGRKLSVIRGIVEQEIQAMVSKRDNIATHYPYQAWDPVPSLSHSTSGVLISHDKLLLQ
INTEREMGNMDYKLGQVSIHSVWLGNNITPLREEEWDEDEEDESDVPAPSSPPTSPINSR
KHRAGVDIHSCSQFLLELYSQWVLPTNTGKKTPVILVSEVVKSLLAVSDLFTERTQFEMM
YSTLTELQKIHPAEDEILNQYLVPAICKAAAVLGMDKAIAEPISRLLETTMRSTHMPSRI
GALHGILYILECDLLDETAKQLIPTITVYLLANLRGIAHCVNIHNQQHVLVMCATAFYLI
ENYPLDVGHEFTAGIIQVCLYQRDCTGSRTQLTSPQPSQGQLSMGNKCWPSQ
NT seq
8799 nt
NT seq
+upstream
nt +downstream
nt
atggcaaccatggagaaattgatgaaggccttcgagtcactaaagtcattccagcagggt
ccgtccagtgaggagccaggccagaaactgaagaaagaatctgccacaacgaagaaagac
cgtgtaactcactgcctaactatatgtgaaaacattgttgcgcagtctcttagaaactca
ccagaatttcagaagttattggggattgctatggaaatgtttttgttgtgttgtgatgac
gcagagtctgatgtccggatggtagcagatgaatgcttaaataagattattaaggcctta
actgactcaaatttgcctcggttacaactggaattgtataaagaaattaaaaagaatggc
ccaccaaggagtttacgggctgcactttggagatttgctgagctggctcaccttgttcgt
ccacagaagtgtaggccataccttgtgaacctgcttccctgtctggctcggatcagcaag
cgatcagaagaatccgtgcaggagacacttgctagtgctgtgccaaagatcatgatggct
ttgggaaactttgcaaatgatagtgaaatcaagatgttattgaaaaccttcattgggaac
cttaaatcaagttcaccaaccattcgtaggactgcggccagctctgccgtgagcatctgt
caacattcaagaaaaacccagtacttctacacttggttattgaatgtacttttaggtttt
atggtccctgtggaagaagaccgacccactccacttattctgggagttatgctcacgttg
cggtacctgatgcctttattgcggcagcaagtgaaggataccagtttacgaggcagcttt
ggtgtgacccggaaggaggctgaaatttctccgtccttggagcagctcatacaggcttac
gaattgacactacactatacccagcatagggatcacaatgtggtaacagcagctttggaa
atgctgcagcaactgttccgtacccctcctcctgaactgctccgggccttgactacttct
ggcagtattactagagttagcattgctcgtgatgacgtctcaaaccgtgttcgcagcggc
agcatcgtggaactaatagctggagggggttcttcaggcagtcctcttgtcctcaggaag
cataaaggtaaaatggtttccggagaagaggatggacttgaagatgatccggagacccga
tcagaggtcagcattgctacttttccaggttcaatgaacagtgaaggagctgttgaggtt
ccatcgccttcaggggtttctaacctggagtcaacaagcccaattccagatactgctgga
catgatatcattactcaacagcctcgatctcagcatacattgcagactgctgagtctgtc
gatctcaatagttcagcgacatcagacttgataggtctcgcagttgaaggggaggttgac
gaggcactgagccaaagttccagccagatcagcaccattcagtcagacactaacgtagac
cagaacgataggaccaatcaggccatatctccactcagtgagagctcgcagaccaccgag
ggcccagattcagccgtgaccccatccgacagttctgagcttgtaagtgtgcagcgggct
gaggggggctcccagtcctccactgagggtcctgacatctctcacagctcccccatggag
ggctcagacttggatactaccactttctccaccagttcctcagctagtagcagtgacaag
gtacttgacgggacagatagtcagtattcagcaatgcagattggacagcttcaagatgag
gaggaggatacatcaaatactcctggagatgtgcttctagacagcttcacaacttccact
cttgcagtaaacaaatctcatttgttaagtcacatgggccacagccggcagtcctctgac
agcagtgttgatcgttttgtctcgaaggatgactgcgttgagtcagcagatcttgatacc
aagccttgccgggtaaaaggagacattggtcattatacagatgagaatgctgcccctttg
gtccattgtgttcgtctccttagtgcatcgtttcttttaatgggacagaagaatggtctt
atccctgacagagaagtgagggtcagtgtcaaagcactggcagtgagttgtgttggagcg
gcaattggacttcatcctgaggctttcttcattaaactgtataggaccccacttgaagtt
ctagagagtcaagaggagcagtgcatatcggatattttaaaatatgtcgaccatggagat
ccacagataagaggtgccactgcccttctctcttcaaccttcattcactcggttctgacc
aagactcggtttaatccagaaaattggcttgccacagtacgaggcacaacaggacatggc
gtctcgttggaggattgtgtgcctttacttcagaaaacattgaaggataaatcatctgta
acctgcaaactggcttgtgctgcagtccggcactgtatcacaagcctctgcaacagcagc
tacagcgagctgggtttgcagctcatgattgacctcttgaccttgaagaataactcttac
tggctagtgaggacggagctattagaaactctggctgaggtggacttcaggctagtcggt
ttcttggagaggaaaacagtggaacttcatagggggcaacatcactacactgggatgttg
aagctacaagagcgagctgttaatgatgtcatcatccacttgcttggagatgaggatcca
agggtacgacacgtggcagctacaaccctcgtgaggctgatacctcgtctcttttttgat
tgtgaccaaggacagtctgatccagtagtagctgtagccagagaccaaagcagtgcatac
ctgcagcttctcatgcatgagactcaatctccatctcactttgcagttagcactatcacc
aggacatacagaggattcaacatttcgcagagcaccactgatgtgacgatagagaacaat
ctgtcccgtgtcatcactgcagtgtctcatgcattgacctcgtctacctcccgagccctt
atacttggttgctgtgaagctttgtctttgctctccttgaactactctgtgtgtaactgg
agcattggttggcactgtggatatacgaccagtggttctcaagcatccagagtccatttg
tacaagaacaggggacgttcgttcagtttatcacagaacagtccaacggatgaactgcgt
aaaagttgtactgtggggatggtcaatatgatactgtctctgctttcctcagcctggttt
cctttggatctttcttcacatcaggatgccttaatattgtctggaaacctgctggcagct
attgcacccaaatcactgaagaatccgtggggcaatgaggatgatagtacaaccaccaaa
cctgaagagccatggcctgccttggctgacagaactttggttgtgatggtggaacagcta
ttctctcacctgatgaaggtcatcaatatctgtgcacatgtcatcgatgatgttgcaccg
gggcctgcgatgaaggcaactctcccttcacttgccaatacgccgtccctcagcccgatc
agacgcaagggaaaggagagggagtcagcagagcaggcaactgcaccaatgagtccaaag
aaaattactgaatccaacccagctgccaggcctacagatgctgttggagctgcaccaaca
agcaagtccacctcgcttggcagtttttatcacctgcctccgtatctgaagctgcatgac
gtcttgaaggcaacgtatgcaaactacaaggttactctggaccttcagaacaataatgag
aagtttggcagcttcttgcgaggggctttggatgttttatctcagcttcttgaaattgca
acattgccggacattgggaagtgtgtggaagagatccttggctacttgaagtcctgtttt
tgcagggaaccaatggcagccactgtttgtgtacagcagttgttgaagacgctgtttgga
acaaatctagcatcgcaatatgatggctcttcttccaatcccaacaaatctcaaggaaag
gtgcagcgcttgggctcttccaatttgcggccaggtctataccactactgtttcatggca
ccatatacccacttcacccaggcgctagctgatgccagtctaaggaacatggtccaagct
gaacctgagcaggacacatctggatggtttgatgtgctgcagaaagtttcttcacaacta
aaggtcaacctgacaaatgtaaccaggcatcgagctgataaggaatccatttggcattct
gttgatgttctccataacgccatacacaactacatccgactctttgagcctttggtcatc
aaggccttgaagcagtacaccacaactacttcagtccatctgcagagacaagtgcttgac
ttgttggctcagctggtacaactcagggtgaactactgtctacttgattctgatcaggta
ttcattgggtttgttctgaagcagtttgaatacattgaggtgggccagtttagggaatcc
gaggccatcattccaaacatatttttcttcctggtattgctgtcatatgagcgctatcac
tccaagccaatcattggaattcccaaaattatccaactgtgtgatgggatcatggccagt
ggccggaaagctgttacgcatgcaatcccggcactgcagcctatagttcacgatctgttt
gttctgcgagggaccaataaagctgatgctggcaaggaactggatacacagaaagaagtg
gtggtttctatgttgctgagactcatccaataccaccagatttgcaataaacatcttgaa
atggtcctggagatgttaattctggtgttgcaacagtgtcacaaggagaatgaagataag
tggaagcgtctttctcgtcagatagctgacatgattctaccgttgctggctaaacaacag
atgcaccttgattcacatgaagccttaggtgtgctgaatacactctttgagacagtggca
ccttcatcactgcgacctgttgacatgttgttgaagagtatgtttgctatgccgtgcacc
ctggcatcagttggaacagttcagctttggatatccggtatcctagctatcctgcgggtc
ctcatttctcagtcgactgaggatattgttctgtcacgggttcaagaattggccttgtct
ccttatttgatttcctgccagaacatagccttgctgagggaccgagggaatcagactgtc
ccaccagaggaacagaatgaagaggcacagagtaaacatctcccagaagaaacatttgcc
aggttcctgttgcagatggtggggatcctccttgaggacattgtaaataagcagttgaag
gtggacatgagcgaacagcagcactccttttattgtcagcagattggcactctgcttatg
tgcctcatacacatcttcaaatcagggatgtttagaagaatcacagcagctgccactaga
ttgattgtggggaatggctttgatggaagcttttacacattggaaagtttgaatgccttg
gttcagtccataattcccactcacccatctttagtactgctttggtgccaaatcctactg
cttgtgaactacacaaactacagctggtggtcagaggtgcatcagaccccaaagaggcac
agcttgtcgagcactaagttgctgagtcctcagatatctgaaaatgaagattcaaaatct
gtatctaagttgggtgtgtgcaatagggaaatagttcgaagaggagccctcattcttttc
tgtgattatgtgtgtcagaaccttcatgattctgaacacctgacttggctgatagtcaat
catgttcaagatctcatcaatctttctcatgaaccaccagtgcaagattttatcagtgct
gttcatcgtaactctgctgccagtgggcttttcattcaggctatccagtcccgatgtgac
aatcttgcaacaccaaccatgttaaagaagaccctgcaatgcttggaggggatccatctc
agccagtcgggggcggtcttgatgctgtacattgataaactgataagcacaccattccga
gtactggcacggatggtggacactctggcttgccgacgagttgagatgcttttggcagaa
agtttgcagaatagtgttgcccaagtgccacgtgaagagttggaaaggcttcagcgttat
ctacagacaacttgtcttgctcaaagacaccaaagattgtactccctgctggacaggttt
cgtataacagttgctgcagacacagtcagcccttcaccaatcgtgacctctcacccactg
gatggagacaagctgtcctgtatagaatctatcactgtggacaaagactggtatatctca
cttgttaaatggcagtgctgcagcaagttaaatactgctttaatggagtgcactgaatta
cttgataaacttcctgaagatgacctccactctgtcatgacagctaaggagttcaacctg
aaccttctgaagccctgcttggcgtttggtttgcgtgcaatctctgcagatcagactagt
gtgctttttgaaactgccagacaaatcaccttggaccaggtggcattccatgtccagcat
cttcctgacaaccatcgggtgttccaaaggttgtgtccatcacccaattcctcttactgg
agtaagattggtgagctttatggggatatgcagttctatcattctgttattagtctgtgc
aatgcactggctcaataccttctctctcttcccaaactgctaccgtctcttcagattccc
actgaaaaagaggctgatattgccagcttcatggtattgtcccttgaggcactgtgctgg
cagttgatgcatgatcaggttccattaagtctggatttacaagctgctctggattgttgt
tgcttagttctgcagcaacctgacatttggaatctgctggcctcggtggcctatgtaact
caagcctgctcggttatcaactgcatccggttcatcatcgaagcaatggcagttgagcca
ggagagcagctacttttgcatgaggagaggagaaagtcaaattctgacgaaagtacagtt
atggatgaagagagtgaggatatgtttgaccgacccaagtgcattacgaaggcctgtgat
gtgatgactgaaatggtggagtgtctccagacagtactgtgcttcggacattccaacaac
gcacgaatcccagcattcctgaatccaactcttaggaatattggtattagcttagccaga
ctgcctctggtcaacggctatacccgtacccctccgttggtgtggaagttgggatggtca
ccacaaactgggggtgaatttggtacaactcttcctgaaattccagttgagtttcttcag
gagaaagaagtcttcaaagagttcatctacaggataaacgttcttgggtggacaagccgc
actcagtttgaggaaacttgggcaactcttcttggtgtgcttgtgactcaaccactagca
atggaccaggaggaggaagttccacaagaggaggacacggagaggacccagattaatata
cttgcagtgcaagcaataacctccttagtgctaagtgctatgtcaattccagtggcaggg
aatccagccaccagctgtcttgaacatcagcctcgtaataaagctctgaaggctctggac
acgaggtttgggagaaaattaagtgtcattcgaggaatagtggagcaggaaatccaagca
atggtatccaaaagggacaacatagcaacacactacccttatcaggcgtgggatcctgtt
ccatccctctcccattcaacatctggtgtcctgataagccatgacaagcttttactgcag
ataaacacagaacgggaaatggggaacatggattataaactggggcaggtctccattcat
tctgtttggctgggtaacaatataacccctttgagagaagaggaatgggatgaagatgag
gaagatgaaagtgatgtgcctgctccatcttcacctccaacctctccaattaactccagg
aaacatcgagctggagttgacattcattcatgctctcaattcttgttggaactctacagt
cagtgggttcttcccacaaacactggcaagaaaacccccgtcatcctggtcagtgaggtc
gtaaaatcgcttttggcagtctctgatttgtttaccgagagaacccaatttgagatgatg
tacagcactttgacagaacttcagaaaattcatcctgcagaagatgagattctgaatcaa
tatctggttcctgctatttgcaaagcagcagctgttctgggcatggacaaggccatagca
gaaccaataagtcgtctgttggagacaacgatgcggagtacccacatgccatcccgaata
ggagcactgcatggaatcctgtacatcctagagtgtgatctactggatgagacagcaaag
caactcattccaaccattactgtttacctgctggccaacctgcgtggcattgcacactgt
gtcaacattcacaaccaacaacatgtgttggtgatgtgtgcaacagccttttatctcatc
gaaaactacccgcttgatgtgggccatgaatttactgcaggcatcattcaggtctgccta
taccagagggactgcactggttcaagaacacagctcacctcgccacagccttctcaaggg
caactgagcatgggcaataaatgctggcccagccagtga
DBGET
integrated database retrieval system
