Chiloscyllium plagiosum (whitespotted bambooshark): 122556849
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Entry
122556849 CDS
T08871
Name
(RefSeq) collagen alpha-1(I) chain-like isoform X1
KO
K19720
collagen type III alpha
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Pathway
cpla04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
122556849
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cpla00536
]
122556849
Glycosaminoglycan binding proteins [BR:
cpla00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
122556849
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
S6PP_C
TILa
RNPP_C
Amnionless
Motif
Other DBs
NCBI-GeneID:
122556849
NCBI-ProteinID:
XP_043560037
LinkDB
All DBs
Position
14:81964593..82146110
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AA seq
1442 aa
AA seq
DB search
MQHFVHLWSFLLLGITHVSLTSAQSGSLCIQDGTEYSDQSIWKADLCTLCICENGIIICD
NIQCDEELPCEDAEIPFGECCPICPTIPPTQNHNDLQPTRKPNPPKRNGNAGPPGPPGPP
GPPGPPGLPGNGGTYMGASGKDGYYGPRPVMCPTECPPGSRGPPGTIGRPGPQGYPGARG
ETGPPGSRGPVGPPGRMGPPGPFGKDGEPGKQGRIGERGLPGLPGSPGRPGMPGMPGMKG
HRGFNGLDGANGKPGLPGTKGEAGSPGGNGLPGPMGSRGLPGERGRNGSPGAAGTRGHDG
SPGKDGAQGSPGPPGTPGFPGQAGAKGEAGEKGSRGSDGTPGLRGEPGLQGRAGISGPPG
KPGKDGSPGARGLLGPPGQPGSPGGPGPIGSPGPAGTNGVPGSKGLPGESGKLGAKGDPG
PQGESGTPGSPGAPGPAGEEGKRGLPGEPGSTGAIGPPGERGPQGMRGVPGTSGPPGEQG
LAGETGPPGPIGPRGANGESGRPGDAGIPGQRGLTGNPGSPGPEGKPGPQGPTGDPGPAG
QTGSPGQRGSPGVMGFPGPRGNDGLPGKAGDRGFVGSPGPQGLPGKPGFVGPPGQPGTAG
ASGEKGEPGPQGFPGLQGLSGAIGPPGESGKPGEPGPRGENGSPGAPGSKGEAGPAGEHG
PPGSSGPTGPRGLPGDSGSAGAQGLPGPAGPPGLMGPSGLQGMPGENGQPGGIGPKGERG
EAGPMGFDGAPGKDGTSGQQGPMGPPGQPGPTGGRGESGPAGPPGPIGSRGLPGERGEIG
PKGPSGFPGPPGLDGQPGPKGSDGNPGPKGSSGLPGPTGIIGLPGRLGLPGSRGEKGERG
SAGPPGSSGFPGSPGPIGATGPAGSAGSPGPTGPPGKDGPAGPAGKTGARGEIGPPGNKG
EPGNPGDKGSFGESGPPGPSGTQGPQGMPGPRGLAGLPGSVGNPGPTGQRGPSGEPGKQG
PPGGPGERGPSGTAGPPGISGVPGQPGRDGNPGSDGPPGQVGAAGPKGDRGEPGPGGHPG
HSGPPGSPGQPGPSGKQGDRGSSGPRGERGLPGPPGATGRVGPQGPSGNKGEDGQPGSNG
IKGHRGFPGAPGMPGPPGNSGEPGPPGNAGAQGARGPPGSTGPPGKEGTNGYPGPIGPPG
PRGLRGESGPSGPSGNHGPPGTPGVPGPPGPPGPCCGTADSGAKGVVYPGSYYFSDQPRE
SVNEQRDEIIAALKSLNSRVDTILIPNGSQKSPARSCRDLKFCHPEFKSGEYWIDPKQGC
KLDAIKVHCNMETGETCVPSNPSRIPRKNWWTNKNTERKKHVWFGESMDGGFHFSYGVDA
LSEDTVEIQIGFLRLLATQASQNITYHCKNSIAYLDAETGSVEKALRLMSWVDVELKAEG
RSRFTYNVLEDGCTRHTGNWSKTIIEYRTRKTLRLPIVDIAPLDIGAEHQEFGVDIGPVC
FL
NT seq
4329 nt
NT seq
+upstream
nt +downstream
nt
atgcagcattttgtgcatttgtggtccttcctacttcttgggataacacatgtgtcatta
acatcagctcaatcgggttccctttgtattcaggatggaacagaatatagtgatcaaagt
atttggaaagctgacctctgcactctgtgcatttgtgagaatggaatcatcatttgtgat
aatatacagtgtgatgaggaattgccatgtgaagatgctgaaattccatttggagaatgc
tgtcctatatgcccaaccattcctccaacgcaaaaccataatgatcttcaacctaccagg
aaaccaaatccacctaaaagaaatggcaatgctggacctcctggacctcctggaccacca
ggacctcctggaccacctggacttcctggcaatgggggaacttatatgggagcgagtggc
aaagatggatattatggtcctcgtccagttatgtgccccactgagtgccctccaggatct
cgaggtccacctggcacaattggacgacctggtcctcaaggttaccctggtgcaaggggt
gagactggacctccaggctctcgtggtccagtaggcccacctggcagaatgggtccacct
gggccgtttggaaaagacggtgaacctggcaaacaaggaagaattggtgaacgtggacta
cccggccttccaggttctcctggtcgacctggtatgcctggcatgcctggaatgaaaggt
cacagaggtttcaatggacttgatggtgctaatggtaaacctggtcttccaggaacgaag
ggtgaagctggttctcctggaggcaatggcttacctggtccaatgggttctcgtggtctg
cctggtgagagagggcgcaatggctctcctggagcagcaggtacccgtgggcatgatggc
agtcctggtaaagatggtgcacaaggctctcctggaccacccggtacacctggttttcca
ggtcaagcaggagctaagggtgaagctggtgagaaaggttctcgtggttctgatgggact
ccagggttaaggggtgaaccaggtttgcagggccgtgctggaatttcaggcccaccgggg
aaacctggaaaagatggatcgcctggtgctcgaggtttactgggtcctcccggtcaacct
ggcagccctggtggaccaggtccaattggtagcccagggccagcaggtactaatggagtt
ccaggttccaaaggtctaccaggtgaatctgggaaactgggagcaaaaggagaccctggt
ccgcagggggaatctggaacaccaggaagtccaggtgcccctggtcctgctggtgaagaa
ggtaaaagaggtctccctggtgaacctgggtcaactggtgcaataggccctcctggcgag
agaggacctcaaggcatgagaggtgtcccaggtacaagtggcccaccaggagaacagggt
ctagcaggagaaactggtccaccaggtcccattgggcctagaggtgctaatggtgaatca
ggtcgtcctggagatgctggcatccctggtcaaaggggacttacaggaaacccaggcagt
cctggtcctgaaggtaaacctggaccacagggtcctactggagatccaggtcctgcaggc
caaactggttcacctggacaaagaggttcacctggtgtaatggggtttcctgggccaaga
ggaaatgatggactacctggtaaagctggtgatagaggatttgtgggtagccctggtcca
cagggtttaccaggaaaacctggatttgtgggtcctccgggccagcctggcacagctggt
gcatctggtgaaaaaggagagccaggtcctcaaggatttccaggtcttcagggtctaagt
ggtgccatcggtcctcctggtgaaagcgggaaacctggtgagccgggtccccgtggtgaa
aatggttccccaggagcgcctggttcaaaaggtgaggctggtcctgcaggtgagcatgga
ccccctggttcctctgggcctacagggccacgtgggcttcctggtgacagtggatcagcc
ggagcgcaaggtcttcctgggcctgcaggcccaccaggcctaatgggcccttcaggatta
caaggtatgccaggtgaaaacggtcagccaggcggtattgggcctaaaggtgaaagaggg
gaggctggtccaatgggatttgatggtgcacccggcaaagatggtacctcagggcagcaa
ggccctatgggtccaccaggtcaaccaggccctacaggagggcggggcgagtctggccct
gctggtcctccaggtcctattggttctcgtggtcttcctggtgaacgaggggaaattggt
cctaaaggtccaagtggatttcctggacctccgggtcttgatggtcagcctggtcctaaa
ggctcagatgggaaccctggcccaaaaggcagctctggcctaccaggtcctacaggtata
attggattacctggtcgactgggtcttcctggaagcagaggagagaaaggtgaacgtggc
tcagcagggcctcctggttcttctggttttcctggcagccctggcccaatcggtgcaact
ggaccagcaggcagtgcaggttctcctggtcctacaggtccccctggtaaagatggacct
gctggtccagctggcaaaactggcgcacgtggtgaaattggacctcctggtaacaaaggt
gaaccaggtaaccctggtgacaagggctcatttggtgaatctggacctcctggtccttct
ggcacacaaggtcctcaaggaatgccaggtccacgaggtttggcaggtttacctggttca
gtcgggaatccaggccctacaggtcaaagaggaccatcaggtgaacctggcaaacagggt
ccccctggtggtcctggtgaacgaggtccttctggtacggccggtccacctggcataagt
ggagtccctggtcaacctggcagagatggtaacccaggctctgatggacctcctggccaa
gttggagcagctggccctaagggagatcgtggtgaacctggtccaggtggtcatccgggt
cactctggacctcctggatctccagggcagcctggtccatctggtaaacaaggtgacaga
ggttcctctggacctcggggtgaaaggggcttaccaggcccacctggggccactggacgt
gtgggcccacaaggtccaagtggcaataaaggtgaagatggacagcctggaagtaatggt
atcaagggtcatcggggattcccaggtgctccaggaatgccaggccctcctgggaattct
ggagaaccaggcccacctggaaatgctggagctcaaggtgcaagaggtcctccaggttca
actggtccccctggcaaagagggtaccaatggttatccaggccctattggtcctcctggt
ccacgtggattacgaggagaatctggccccagtggtccttctggtaaccatggccctcct
ggtactcctggtgtccctggtcccccgggtcctcctggcccttgttgtggaacagcagac
agtggtgctaagggtgtagtgtatccaggaagctactactttagtgatcaacctcgtgaa
tctgtgaacgaacaaagggacgaaataatagctgctctgaaatccctcaacagccgagta
gatacaatcctgatcccaaatggatcacagaagagtcctgcccgaagttgccgagatcta
aaattttgccatcctgaattcaagagcggagaatactggattgatcccaagcaaggctgc
aaattggatgctatcaaagtacattgcaacatggagactggagagacctgtgtgccttcc
aaccccagcaggattccacgcaagaactggtggacaaacaaaaacacagagagaaagaag
catgtgtggtttggagagtccatggatggtggattccattttagctatggtgtcgatgcg
ttatcagaagatactgttgaaatccaaattggattccttcgccttcttgccactcaagca
tcccagaatatcacctatcactgtaagaacagtattgcctacctggatgctgagactgga
agtgtggaaaaagctttaaggctgatgagttgggtcgatgtggagctcaaagctgaagga
cgcagcagattcacatacaatgtccttgaagatggttgtaccaggcatacaggaaattgg
agcaagactatcattgaatacagaacacggaagactcttcgcttgcctattgtggatatt
gcacctttggatattggtgctgagcaccaggaatttggtgttgatattgggcctgtctgc
ttcttgtaa
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