Chiloscyllium plagiosum (whitespotted bambooshark): 122557145
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Entry
122557145 CDS
T08871
Symbol
pcdh11
Name
(RefSeq) protocadherin-11 X-linked isoform X1
KO
K16498
protocadherin delta 1
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Pathway
cpla03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
122557145 (pcdh11)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cpla01009
]
122557145 (pcdh11)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
cpla04515
]
122557145 (pcdh11)
Protein phosphatases and associated proteins [BR:
cpla01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
122557145 (pcdh11)
Cell adhesion molecules [BR:
cpla04515
]
Cadherins
Protocadherins
122557145 (pcdh11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_CELSR2_9th
Cadherin_2
Fibulin_C
Cadherin_4
DUF6249
TMEM154
Motif
Other DBs
NCBI-GeneID:
122557145
NCBI-ProteinID:
XP_043560438
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Position
15:21260977..21998983
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AA seq
1237 aa
AA seq
DB search
MDALMLLLLMVLMLLVVSPPASGQERDYSLREELPDNVLVANLVRDLNLTAAAAAGLPLT
FKLVSKTGDAPLLRVEGSSGELYTTAHRIDRERLCANTFSDSSRCFYEVEVAVLPNEVFQ
LVKMRFLIEDVNDNAPLFPSAVINISIPENTAVNSRYSVPSALDPDAGINGIQHYELLKG
QSVFGLDIIETPEGDKWPQLIVQQSLDREQKDTYVMKIKVEDGGQPPRSSTAILQITVTD
VNDNRPVFKEGETDVHIPEDAPVGTSVVQLHATDADLGSNAVVSFSFSNQVSALARRLFA
VNPSTGLITVRQPLDREEFPVHKLTVLASDGSSTPSRAVVTINITDVNDNVPTIDTRYII
NPVNGTVLLSENAPLNTKIALITVTDEDADLNGKVTCFTDHDVPYRLKPVFESQFLLETA
ALLDYETTKEYTIKIVASDAGKPPLNQSATVVIKLKDENDNAPVFNQPVIGLSIPENNTP
GTQLTKISATDADSGKNAEITYLLGPNAPSIFSVDRRTGILSAMRRLDREKQDRYVFTVL
ARDGGKPSIQSNATVVVTVLDQNDNSPSFTHSEYNFYVPENLPMYGTVGLITVTDADAGG
NAAVSLSILNDKGYFIIDPNSGVIKPNITFDREQQSSYTFQIMAVDGGRPQRSSVARVTI
NVVDVNDNSPVFVYPPSNFSYELVSTSASPGSVVGKVFAIDNDTGMNAELRYSIVSGNSR
GLFAIDPVTGNITLQEKVTTADHGLYRLVVKVIDLGQPESLHAIALVHLFLNETINNFTY
VQDLVRKSMETPLDKNVGDSQMTPQTNDYIKIVIAIIAGTMTVILVIFVTALVRCRHTPR
HKTVQKGKQSGEWVSPNQENRQIKKKKRKKKRSPKNLLLNFVTIEESKPDDPAHEHINGT
LDLPVELEDQTMGKYNWGTTPTTFKPDSPDLGKHYKSASPQPSFQIKPETPVPVKKHHVI
QELPLDNTFVVGCDSLSKCSSSSSDPYSVSECSCQGGFKTAGPIHTRQSQRRVTFHLPDG
SQESCSDSGLGDHEPNSSASTSHPLPLGFPQEEYYEQTSPSRTEGDGNSDPESRGMCISE
SSFRCPGSTEHRNVHLNVESNVNPPIRGVEVSLQKVLTEASETCTQECLVLGHSDNCWMP
PSLTQYQQPNPPLPSIGFQQSWGRNGRSEGRHTLGRANNKDDIDKSQGSGRQQLYSNSER
HCSNEDPVKVIPLANFTPNQQGSVSGDSSPYVREHQL
NT seq
3714 nt
NT seq
+upstream
nt +downstream
nt
atggacgcgctgatgctgttgctgctgatggtgctgatgctgctggtggtctccccgccg
gcttcgggtcaggagagggattacagcctgcgggaggagctgcccgacaacgtgctggtg
gcgaacctggtgcgggacctgaacctgaccgcggcagcggcggccggtctgcccctcacc
ttcaagctagtctccaagaccggggatgccccgctgctgcgggtggaggggagcagcggt
gagctctacaccaccgcccaccgcatcgaccgcgagagactgtgcgccaacaccttcagc
gacagcagccgctgcttctacgaggtcgaggtggccgtgctgcccaacgaggtcttccag
ctggtcaagatgcgcttcctcatcgaggacgtcaacgacaacgcgcctctcttcccctcg
gcggtcatcaacatctccatcccggagaacaccgccgtcaactcccgctactcggtgccc
tccgccctggaccccgacgctggcatcaatggcatccagcactacgagctgctcaagggc
cagagcgtcttcgggctggacatcatcgagacccccgagggcgacaagtggccgcagctc
atcgtccagcagagcctggaccgcgagcagaaggacacctacgtgatgaagatcaaggtg
gaggacggtgggcagccgccccgctccagcaccgccatcctccagatcaccgtcaccgac
gtcaacgacaaccggcccgtcttcaaggagggcgagaccgacgtccacatccccgaggac
gcgccggtgggcacctcggtcgtccaactgcacgccaccgacgccgacctgggctccaac
gccgtcgtcagcttctccttcagcaaccaggtctcggcgctggcccgccgcctgttcgct
gtcaacccgtccaccggcctgatcaccgtcaggcagccgctggaccgggaggagttcccc
gtgcacaagttgaccgtcttggccagcgacggtagctcgacaccctccagggccgtggtc
accattaacatcaccgacgtcaacgacaatgtgcccaccatcgacaccaggtacatcatt
aaccctgtcaatggtactgtcttgttgtcggaaaatgcaccactcaacaccaaaatcgca
ctgatcacggtcacggacgaagacgccgatttaaatgggaaggtcacctgcttcactgac
cacgatgtcccataccgtttgaagcctgtgtttgaaagccagttcttattagaaactgct
gccttgctggactatgagactacgaaagaatatactattaagatagtggcttctgatgca
ggtaaaccaccgttaaatcaatcagccactgtggtgattaaactgaaggacgagaatgat
aacgctcctgtttttaatcagcccgtaattggcctgtcaatccctgaaaataacacccct
ggtacacagctaacaaaaatcagtgccactgacgcggacagtgggaaaaatgcagagatc
acttacctcctgggtcccaatgccccgtccatcttcagtgtagatcggagaactggcatt
ctgtcagctatgaggagattagatcgagagaaacaagaccgttacgtttttacagtactg
gccagggatggaggcaagccttctattcagagcaatgctactgtggttgtgactgtgtta
gatcaaaatgacaacagcccttccttcacacacagtgaatacaatttctacgtgcctgaa
aatctgcccatgtatgggacagtgggacttattactgttacggatgcagatgcaggaggt
aatgcagctgttagcctttccatcttgaatgataaaggctactttataattgaccccaac
agtggggtcatcaagcccaatattacatttgacagggagcagcaaagttcctatacattt
caaatcatggctgtggatggaggaaggcctcaacggtcgtctgtggctagggtgactata
aatgttgttgatgtaaatgataacagcccagtgtttgtatatcctccatctaacttttcg
tatgaactggtatcgacctctgccagccctggctctgtggtgggtaaagtttttgcaatt
gacaatgacacagggatgaatgctgaactgcgctacagtatagtcagtgggaattccaga
ggactgtttgccattgacccagtgactggcaatatcactttgcaagagaaggtgaccaca
gcagaccatggcttatacaggctcgtggtgaaggtcattgacttgggtcagccagaatcc
ttgcatgccatagcacttgtacacttgtttctcaatgaaaccatcaataattttacctat
gtgcaagatctggtacggaagagcatggagacgccattggataagaatgttggagatagc
cagatgaccccacagactaatgattatattaagattgttattgccatcattgctgggact
atgactgtcattcttgttatttttgtgactgctttggtgcgttgccgtcacacgccaagg
cataaaactgtgcagaagggaaaacagagcggggaatgggtttctcctaatcaggaaaac
cgacaaattaagaagaaaaaacgaaagaagaagaggtcaccaaagaaccttcttctgaat
tttgttacaattgaggagtccaaaccagatgaccctgctcacgagcacatcaatggcacc
ttggaccttccggtggaattggaggatcagactatgggcaagtacaactggggcacaaca
cccaccacttttaaacctgatagcccggatctaggaaaacactacaagtcagcctcccca
cagccctcctttcaaatcaagccagagactccagtgccggtgaagaagcatcatgtcatc
caagaattaccgctggataacacatttgttgtgggctgcgactctctatccaagtgttct
tcgagcagttctgacccctacagcgtatcagaatgcagttgtcagggaggcttcaagact
gcagggccaatccacaccagacagtcacaacgaagggtcacgttccaccttcctgatggc
tctcaggaaagttgcagcgatagtggcttgggtgaccatgaacccaacagcagtgccagc
acatcacaccctctgccccttggcttcccacaggaggaatactatgagcaaacatcccct
agcaggactgaaggtgatggcaactcagaccccgaatccaggggtatgtgtatctctgaa
agttcatttcgttgtcctggttccacagaacatcgcaacgtccacctgaatgtggaatca
aacgtgaaccctcctataaggggtgtcgaggtgtctcttcagaaagtgctgactgaagcc
tcggagacttgcacgcaggagtgtctggtccttggtcactctgacaactgctggatgccc
ccatcgctgacccagtaccagcagccgaatcctcccctgccgtctatcggatttcagcag
agctggggcagaaatggcaggtcagaggggcggcatactctggggagagccaacaacaag
gatgacattgataaaagccaaggcagtggcagacagcagttgtacagcaactcggaaaga
cactgcagcaacgaggatcctgtgaaggtcattcccctggcaaactttacaccaaaccag
cagggctcagtgtcaggtgacagttccccctatgtccgggagcaccagctttag
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