Chiloscyllium plagiosum (whitespotted bambooshark): 122557174
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Entry
122557174 CDS
T08871
Symbol
cstf2
Name
(RefSeq) cleavage stimulation factor subunit 2 isoform X1
KO
K14407
cleavage stimulation factor subunit 2
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Pathway
cpla03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122557174 (cstf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpla03019
]
122557174 (cstf2)
Messenger RNA biogenesis [BR:
cpla03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
122557174 (cstf2)
U7-dependent histone pre-mRNA processing factors
122557174 (cstf2)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CSTF2_hinge
RRM_1
CSTF_C
RRM_7
RRM_10
Motif
Other DBs
NCBI-GeneID:
122557174
NCBI-ProteinID:
XP_043560505
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Position
15:28899156..28966478
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AA seq
668 aa
AA seq
DB search
MANLVRDPAIDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVLSFRLVYDRETGKPKGYGF
CEYQDQETALSAMRNLNGREFNGRALRVDNAASEKNKEELKNLGTAGPVMESPYGDPVSP
EDAPESISRAVASLPPEQMFELMKQMKLCIQNSPQEARNMLLQNPQLAYALLQAQVVMRI
VDPEIAMKMLHRPANVTPLISSGQPTAGPNAVTVQAAPPVSQPQPMSGMHVNGAPSMMQQ
PMQPATSVPGPGPVQGPGGPLPGPGPGPGPGPGPGPGPGPVGPGGNMQPQMGLPQSGPVP
MDRGQGSMHSPVASAGTAQIERGQVPMQDPRGNMQRGPPVGGAPAPRGLLGDAPNDPRGG
TLLSVTGEVEPRGYIGPPHQGPPMHHVPSHDGRGPPDMRNAHEPRGMQHDMRAGPMGEQR
GPIGEQRGPMGEPRGPMGEPRGPMGEPRGPMGEPRGPMGDPRGMMGDPRGPMMDQRGPPH
ESRGSFDPRSISTHDPRSGPQHDPRSQPPPAQQDPRGGSYPNAHQPNAPMGTRDPRGIDS
RGIDTRGPGPGPGPGPGPNQGPVANPRGPMAGGLQVPGPGTHQIGNSGPQGSQQPGPPRQ
GPTHAVAGGQPGGFSPAQTQVTPQDHEKAALIMQVLQLTPEQIAMLPPEQRQSILILKEQ
IQKSAGAP
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggccaacttggtccgggacccggccattgatcgctcactgcgctccgtattcgtggga
aatattccatatgaagctacagaagaacaattgaaggatattttctctgaagttggtcca
gtgttgagtttcagacttgtgtatgacagagaaactgggaaacccaaaggttatggcttc
tgcgagtaccaggatcaggagactgcactcagtgccatgcgcaatctcaatgggagggaa
tttaatggaagagcactgcgtgtggacaatgctgctagtgaaaagaataaggaagagctc
aagaatcttggtacagcaggccctgtcatggagtctccttatggtgatccagtctctcca
gaagatgctccagagtccatcagtcgtgctgtagccagccttccacctgagcaaatgttc
gaactcatgaagcaaatgaagctgtgcattcagaacagtcctcaggaagctcgtaacatg
cttcttcagaatcctcagttagcatacgcgcttttgcaagcacaggtcgtcatgagaatt
gtcgatcctgaaattgccatgaaaatgttacatcgaccagctaatgtgacgccactgatt
tcatctggccaacctacagcaggaccaaatgcagtcacagttcaagctgctcctccagtc
tcccagccacagccaatgagtgggatgcatgtgaatggggctccttccatgatgcagcaa
cctatgcagcctgcaacgtctgttcctgggccaggaccagtacagggtccaggggggcca
ttacctgggcctggaccagggcctggtcctggacctggacctggacctggaccgggacca
gttgggcctggaggaaacatgcagccgcagatgggtcttccgcagtcaggacctgtgcca
atggatagaggacaaggaagtatgcactcacctgtggcctctgcagggactgcacagatc
gagagaggacaagtcccaatgcaggaccccagaggcaacatgcagcggggtccaccagta
ggtggggctccggctccaagaggtttattaggagatgcaccaaatgatcctcgtggagga
actctgctttctgtcactggggaggtggaaccaagaggatatattggtcccccgcatcag
ggcccacccatgcaccatgtgcctagtcatgatggcagaggacctcctgacatgagaaat
gcccatgaaccacgaggaatgcaacatgacatgagagcagggccaatgggagaacagaga
ggacccattggtgaacagaggggcccaatgggtgagccacgtgggccaatgggtgagcca
cgtgggccaatgggtgagccacgtgggccaatgggtgagccaagaggtcctatgggagat
ccaagaggaatgatgggagatccaaggggtccaatgatggatcagaggggccctcctcat
gaatctagaggttcatttgatccccgcagtatttcaactcatgatcctcgatctggacct
cagcatgatcctcgctcccaacctcctcctgctcagcaagaccctcgtggagggtcttac
ccgaacgcacatcaaccaaatgcacccatgggcactagagatcccagaggtattgattca
agaggtattgacacaagaggaccagggcctggaccagggccgggaccagggccaaatcag
ggcccagtcgcaaatccaagagggccaatggcaggaggtttacaggttccaggtcctggc
actcatcaaatagggaacagtggccctcagggatcccaacaacctggtccacctcgacag
ggtcctactcatgcagtggctgggggtcaacctggaggattcagtcctgctcagactcaa
gtgacaccacaggatcatgagaaggctgcactgattatgcaggtactccaattgactcca
gaacagattgccatgctacctccggagcagagacagagtatccttatcctgaaggaacag
attcagaaatctgcaggagccccttga
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