Chiloscyllium plagiosum (whitespotted bambooshark): 122557365
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Entry
122557365 CDS
T08871
Symbol
rlim
Name
(RefSeq) E3 ubiquitin-protein ligase RNF12-B isoform X1
KO
K16271
E3 ubiquitin-protein ligase RLIM [EC:
2.3.2.27
]
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cpla04121
]
122557365 (rlim)
Enzymes [BR:
cpla01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
122557365 (rlim)
Ubiquitin system [BR:
cpla04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
122557365 (rlim)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-rbx1
zf-RING_11
zf-C3HC4_2
zf-ANAPC11
zf-C3HC4
zf-RING_UBOX
zf-RING_5
zf-C3HC4_3
zf-RING-like
zf-RING_4
zf-HC5HC2H
Prok-RING_4
Motif
Other DBs
NCBI-GeneID:
122557365
NCBI-ProteinID:
XP_043560939
LinkDB
All DBs
Position
15:60082859..60144509
Genome browser
AA seq
663 aa
AA seq
DB search
MENAANEDGGNDQAGTQSSNEDQRRRQSDRLDREEAFYHFVNNLSEEEYRLMRDNNLFGT
PGEVTEEELSRRLQQVKDGVIQNNPDTRRSEGSGDNRGTEGSEEGSSGDSLLEWLNAFRQ
TGNTTRSGQSGNRSWRAVSRTNPTSGDFRFSLEINVSRSRIDQSAEMESEQPMDTSNVEA
TVPAAEEAVTQVPSGNTSAPSPTATQPSPPVTDPPMAMAEDDVQSEPERSASTGTRQSRG
PSGELSYENRYELLRHELETQAQHQGRPRSGRSRSPERRRSSRTRSNRSRSPLHQVSEGT
SRSRRQGLSQRSDRSVSESGTEGSSRTRQHVMSRQSRVGDGVQSEITNHVPVLEPNEPRE
TSQEAADSSEAVVSDPSVAGRRPPTIMLDLQVRRVRPGENADRDSIANRTRSRSQTSDNT
VVYESERGGLRRTFSRSERAGVRTYVSTIRIPFRRISDSGLGEAASVALQTILRRIMMGG
ELSSFVDSDSDSESSNRGQSQVQDVSESQDSINESPGMASEGRTGEQQAGEQRNGSETDS
ITGARRREGQQSRGLFGLEESGTLPILRLAHFFLLNDEDEDDQPRGLTKEQIDNLSTRNF
GESDAIKTCSVCISEYTAGNKLRKLPCSHEYHVHCIDRWLSENSTCPICRQAVLVRTTGE
SVG
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atggaaaatgctgctaatgaagatggaggaaatgatcaggctggtactcagtcttctaac
gaagatcagcgcaggcgtcagtcagaccgcctggatcgggaggaagccttctatcatttt
gtcaataacctgagtgaagaggagtacaggctgatgagggataataacctgtttggtaca
ccaggggaagttacagaagaggaacttagcaggcgtttacagcaggtgaaggacggcgtt
attcagaacaaccctgatactcggagaagtgaaggttctggtgacaacagaggtactgaa
ggttcagaagaaggatcaagtggagattctcttctcgagtggttgaatgcttttaggcag
acggggaacacaacgagaagtggtcaaagtgggaatcgttcctggagagcagtcagtcgt
acaaacccaacaagtggtgattttagattcagcttggaaattaatgtcagtcggagtaga
attgaccaaagtgctgaaatggaaagtgagcaacctatggacacttcaaatgtggaagcg
acagtacctgcggcagaagaagcagtgacacaagtaccatccggaaatacaagtgcaccc
tccccaacagcaacgcaaccatcaccacctgtaacagatccaccaatggctatggcagaa
gacgatgttcagagtgaacctgaaagatctgcttccactggaacaagacaaagtcgagga
ccaagtggagagctatcttatgaaaacagatatgaacttttgagacatgagcttgaaacc
caagctcaacatcaaggtcgcccaagaagtggtagaagtaggagtccagagcgccggagg
tcatctagaacaaggagcaatcgaagtcggtcacccttgcatcaagtcagtgaggggacg
agtagatcacgacgtcagggactttcccagaggtctgatagatctgtttcagaaagtgga
acagaaggaagttccagaactagacagcatgtcatgtccagacagagtcgggttggagat
ggggtgcagtctgaaataacaaatcatgttcctgttcttgagccaaatgaacctagagag
acttcccaggaagctgctgactcttcagaagccgtcgtcagtgatccctctgtagctggg
cgccgaccaccgacaattatgttagacctgcaagtgagaagggtgagacctggtgaaaat
gcagatagagatagcatagctaacaggacccggtcacgatcccaaacatccgacaacact
gttgtatatgaaagtgagcggggtggcctcaggcgcacattctcccgctcagaacgagca
ggggtgcgaacttatgtcagcaccattcgtattccttttcgcaggatatctgattcaggt
cttggagaggctgcctcagttgccctccaaacaatactacgccggataatgatgggtggg
gaactgagttcctttgtggacagtgacagcgattctgaatctagcaacaggggccaaagt
caagtgcaggatgtttctgaatcgcaagacagtataaatgaatccccaggcatggcttct
gaaggcagaacgggtgagcaacaggcaggggagcagcggaatggcagtgaaacagatagc
ataactggagctaggagaagagaaggtcagcaatctcgaggcttatttggtcttgaagaa
agtggtactttgcccatacttaggcttgctcatttctttctgctcaatgatgaagatgag
gacgatcagcccaggggactgactaaagagcagattgataacctgtccacgagaaatttt
ggagaaagtgatgcgattaaaacctgcagtgtgtgtattagtgaatacacagcaggaaac
aagctgcgcaagctaccctgctctcacgaatatcacgttcattgtatcgatcgctggctg
tccgaaaactccacatgtcccatttgccgtcaggctgttttagttcgcaccactggtgaa
agtgttggctag
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