Chiloscyllium plagiosum (whitespotted bambooshark): 122557381
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Entry
122557381 CDS
T08871
Symbol
col4a6
Name
(RefSeq) collagen alpha-6(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Pathway
cpla04382
Cornified envelope formation
cpla04510
Focal adhesion
cpla04512
ECM-receptor interaction
cpla04518
Integrin signaling
cpla04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
122557381 (col4a6)
04518 Integrin signaling
122557381 (col4a6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
122557381 (col4a6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
122557381 (col4a6)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
122557381 (col4a6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cpla04147
]
122557381 (col4a6)
00536 Glycosaminoglycan binding proteins [BR:
cpla00536
]
122557381 (col4a6)
Exosome [BR:
cpla04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
122557381 (col4a6)
Glycosaminoglycan binding proteins [BR:
cpla00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
122557381 (col4a6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
122557381
NCBI-ProteinID:
XP_043560960
LinkDB
All DBs
Position
15:61578730..62000044
Genome browser
AA seq
1708 aa
AA seq
DB search
MTDWILLVVLGSLAADLVQAGAKNAYTGPCAGRDCSRGCQCLPEKGARGQPGLIGPQGRS
GPPGFSGPEGLRGPKGEKGNPGNPGAAGMKGEKGPIGVPGFVGMNGIPGHPGQQGPRGRP
GLDGCNGTIGSPGFPGSAGFPGSPGFPGETGLKGAKGEPIQISGNRDELRGEPGLPGLDG
VPGPAGSLGSDGAVGPRGQPGLPGRPGPPGLPGLKGNMGLGFQGQKGGKGDVGLPGPPGP
PPATGQLEFGGQPGFPKGDKGEKGDMGSPGPRGEFGFPGLPGYSDIVRAKGEKGIPGLPG
PRGSFGLDGSPGIPGKKGQPGFPGARGRDSYPGMKGDQGDVGPPGPPAYIDGSGTLIKGP
PGDSGSPGLPGPPGIQGLPGSPGLPGSPGFPAQVQGSKGLPGFSGVKGPKGEKGAAGRMI
FSQPGPQGPPGLPGPPGPPGLPGPSGSRTRVTGPVGPPGLPGPAGPPGFRGNKGYKGEPG
ACACDGVITGNGIQGPPGPPGEPGKPGFNSGKGQCGDPGPPGPPGQTGPPGVPGVPGGLG
PKGQKGDSSGISAKGQKGDPGNPGPRGPSGTPGKPGNDGFPGLPGPPGEPGDSGTGIHGA
KGLPGRRGPKGPPGEMGTPGVGFPGPPGFQGPPGDPGVDGIPGPPGLPGVPGDCCCGETA
GEGDLHTEGGITLPCVIPGNVGLRGRPGVTGHPGPKGRPGFSGSPGRPGIDGPKGPPGDP
GLLGEPGRPGFPGPPGDQGRPGLPGLDGNEGSPGKRGTPGFPGQKGRPGDVYGAERGAPG
QPGPSGKPGLKGFPGDPGFPGAKGVDGRPGFSSHKGERGNPGYPGSQGLPGPPGPNGPGV
IPGFPGEMGRPGELGQPGCEGFPGPKGSAGDRGPPGPAGMKGFPGFPGDRGLPGSSGRPG
PPGEPGRRAQFNRYGLKGEKGSPGVVGFPGIPGRQGQPGFDGSKGEMGSPGRPGFPGSIG
RQGMKGDRGDVGFPGPPPPLVGGFPGPRGDPGNPGKQGFSGMRGNKGLPGPIGRPGLPGP
SGYPGFEKGRPGDQGPPGYPGSPGQPGPKGSFGINGFPGSTGEKGNDGPPGLPGYPGDLG
FVGPKGEPGDRLTVIGHLGRKGERGQPGYPGGRGQTGLRGDPGLSGSPGPPGLKGLPGER
GRPAGPGAPGLQGMAGTPGYQGSRGYPGPPGPPGQLSQVGQKGLPGSPGLDGLNGLPGPK
GPRGTPGAVLAAPPGPPGLPGLKGEYGAPGIGVGAPGYPGQKGPRGDPGHAGLMGPPGKP
GSPGSTIPSNIPGKPGDVGPPGYDGERGPSGPVGPPGPPGLGFERGDPGDPGFPGTPGRQ
GARGDIGSPGLPGVPGPPGFKGERPEQSIMGFPGTNGPPGDPGYPGPKGDTGPEGFPGEQ
GLPGAVSEIILASPVPGPPGLPGPAGLSGSSGNQGIPGYLGFPGVKGQPGKSGRVGPNGL
PGLPGMSGDPGLKGYPGPPGLEGSPGKPGTAGLPGMPARSVNVGYTLVKHSQSDSVPPCP
LGMNRLWDGYSLLFVEGQEKTHNQDLGMAGSCLPRFTTMPFLYCNVDEVCHYANRNDKSY
WLSTTAPIPMMPVSNQQIQRYISRCSVCEVPSQAIAVHSQDITIPQCPEGWRSLWIGYSF
LMHTAAGAEGGGQSLVSPGSCLEDFRSTPFIECNGARGTCHYFANKYSFWLTIVEEGQQF
VESPPSETLKAGQLRTRVSRCQVCIKYL
NT seq
5127 nt
NT seq
+upstream
nt +downstream
nt
atgaccgattggatcctacttgtggtcctaggctctttggctgctgacttggtccaagcg
ggggcgaagaatgcttacaccgggccgtgtgcaggacgagactgcagcagaggttgccaa
tgtttgccagagaagggggcgaggggtcagcctggactgattgggccacagggacgcagt
gggcctccagggttttctggaccagagggattaaggggaccgaaaggtgaaaaaggtaac
cctggtaacccgggagctgcaggcatgaagggagaaaagggtccaatcggtgtgccagga
tttgtcgggatgaatgggattccaggtcacccaggtcagcaaggtcctagaggacgccca
ggtctggatgggtgcaatggtaccatcggatctccaggttttcctggcagtgcaggtttt
cctggatctccaggattcccgggtgaaacgggtctcaaaggagccaaaggagagccaatc
caaatctcaggcaaccgtgatgaactcaggggtgagccaggcctaccaggtttggacgga
gttcctggtccagcgggctctcttggatcagatggtgctgttggtcccagaggacagccg
ggtcttccaggccgacctggtcccccaggccttccagggttgaaaggtaacatggggttg
ggattccaaggacagaaaggaggaaagggagacgtgggcctgccaggtcctcctggacca
ccacctgccaccgggcaacttgagtttggtggacaacctggatttccaaaaggggacaaa
ggtgaaaagggtgatatgggatcacctggtcctcgtggagagtttggatttcctggcctt
ccgggatattcggatatagtgagagcaaaaggagagaaaggaatccctggtctcccaggc
ccaaggggatcttttggtttagatggatcacctggaattccaggaaagaaaggccaacca
ggtttccctggagcacgcggaagagatagttatccaggaatgaagggtgaccagggtgat
gtgggtccaccaggacccccagcttacatagatggaagtggtactcttattaaaggtccc
cctggagattcaggttcaccagggctcccaggccctccaggaatccaaggcttaccaggt
tcaccgggattgccaggatctccgggctttccagcacaagttcaaggctccaagggttta
ccaggattttcaggtgttaaaggacctaaaggcgagaaaggagcagcaggaagaatgata
ttctcacaaccaggaccacaagggccaccaggattaccaggcccacctggacctcctggc
ctaccaggtccttcaggtagtcggaccagagtaactggaccagttggtcctccaggattg
cctggaccagccggaccaccaggattcaggggaaataaaggctataagggtgagccaggt
gcttgtgcatgcgatggagtgataactgggaatggaattcaaggaccccccggcccacct
ggtgaaccaggaaagcctggtttcaatagtggcaaaggccagtgtggagacccaggaccc
ccaggacctccggggcaaacaggccctccaggcgttccaggtgtgccaggaggattaggt
ccaaaaggacagaagggagactcatcaggtatatcagcaaaagggcaaaaaggagatccc
ggtaatccaggcccacggggaccttcaggcactccagggaaaccaggaaatgatggcttc
ccaggtttaccaggacctccaggtgaacctggtgacagtggaacaggcattcatggtgct
aaaggtcttccaggtaggcgtggtccaaagggtcccccaggtgagatgggtacaccaggc
gttggattcccaggccctccgggtttccagggtcctccaggtgatccaggagttgatggt
ataccaggaccaccaggattaccaggggtaccaggtgactgttgctgcggggaaaccgct
ggggaaggcgaccttcatacagagggaggaatcactctgccctgtgtgatcccaggcaat
gtaggtttgaggggtagacctggagtaacaggacacccaggtccaaaaggtagacctggc
ttctcaggtagtccgggacgaccaggaattgatggaccaaaaggaccccctggagatcca
ggcttgttgggagaaccaggccgaccagggtttcctggaccacctggtgatcagggacgg
cctggtctccctgggctggatggaaatgaaggttctcctggaaaacggggtaccccagga
tttccaggtcagaagggacgcccaggtgatgtgtatggtgcagaaagaggtgccccagga
caaccaggtccaagtggaaaaccaggattgaaaggatttcccggagatcctgggtttcca
ggagccaaaggtgttgatggtcgaccgggattttcaagtcataaaggtgaaagaggaaat
cccggctaccctggctctcaaggcttgcctggtcccccaggcccgaatggaccaggcgtc
atacctggtttcccaggagaaatgggaaggcccggtgagcttggacaaccaggctgcgaa
ggttttcctggaccaaaaggttcagctggagatcgtggacccccaggtcctgcgggtatg
aagggatttccaggatttccgggagatagaggtctccctggatcatcaggccgccctggt
cctccaggagaacctggtcgtcgagctcaatttaatcgatatggattgaaaggcgagaaa
ggctctcctggtgtggttggcttcccaggcattcctggtcgacaaggccagccaggcttt
gatggaagtaaaggagaaatgggcagcccaggtagaccaggcttccccggttccataggc
aggcaaggaatgaaaggtgataggggtgatgttggattccctgggcccccgcctcctctt
gtaggaggctttccaggaccaagaggtgaccctggcaatcctgggaaacaagggttttct
gggatgagaggaaacaaaggcttgccagggccaattggtcggcctggactcccaggacca
agtggctatcctgggttcgagaaaggtagaccaggtgatcaagggcctccgggatatcct
ggatcgccaggacaaccagggccgaaaggctcctttggcattaatggtttccctggatcg
actggagaaaagggtaatgatggtccgccaggtcttcctggataccctggtgatttgggt
tttgttggtccaaaaggtgaacctggtgatagactaactgtgataggccatctgggaaga
aaaggagaacgtggacaaccagggtatccaggtggaagaggacagactggtttgcgtggt
gaccctggtctctcaggtagccctgggcctcctggacttaaaggattgccaggtgaaaga
ggtcgaccagctggccccggtgctccaggtctgcaagggatggctgggactccaggatac
cagggatctcgaggatatccaggtcctccgggacctccaggtcaactttctcaagtagga
cagaaaggactcccaggctctccaggactagatggtttgaatggtttgcctggacctaaa
ggacccagaggaacaccaggtgctgttttggcagcaccgccagggcctcctggtcttcct
gggttaaagggtgaatacggtgcaccaggcattggtgtaggcgcaccaggatatccagga
caaaaaggacctcgaggagatccaggccatgctggattaatgggtcctccagggaaaccg
ggttccccaggatccaccatcccttcaaacattcctgggaagccaggtgatgttggtcct
cctggatacgatggtgaacgaggtccttcaggtccagttggtcctcctgggccaccaggc
ttgggttttgaaagaggagatcccggtgaccctggctttcctggtacccctgggcgacaa
ggtgcaaggggggacattgggtctcctggactgccaggcgttcctggtcctccaggattc
aaaggtgaaaggccagaacaaagcatcatgggatttccaggaacaaacggccctcctggt
gatccaggatacccaggacccaaaggggatactggtcctgaaggttttccaggagaacaa
ggcttaccaggagcggtatcagaaattatactcgcatcaccagtccccggtcccccaggt
ctgcccggacctgctggtttatctggttcttcgggaaatcaaggtatccctggttattta
ggatttccaggtgtcaaaggccagcctgggaaatcaggtagagtgggaccaaatggttta
cctggccttccaggtatgtcaggagatccaggcctgaagggatatcctggaccacctgga
ttagaaggtagccctgggaagccgggaacagcaggacttccaggaatgccagctcgtagt
gtaaatgtgggctacacgctggtaaaacacagtcaatcagatagcgtgcctccctgccca
ttgggaatgaacagattgtgggatggatacagcttactgtttgtggaaggtcaagaaaag
actcataaccaggatttgggaatggctggctcatgcttgccccgtttcaccactatgcct
ttcctgtactgcaatgttgatgaggtgtgccactacgcaaacaggaacgacaagtcttac
tggctttctaccactgccccaatccccatgatgcctgtctccaaccagcagatccaacgc
tacatcagccgctgctcagtctgcgaggtgccatctcaggctattgctgtgcatagccag
gacataaccattccacagtgccctgaaggctggaggagtctgtggataggttactctttc
cttatgcacacagctgctggtgctgaaggtggaggccagtctcttgtctcgccaggctcc
tgcctggaggacttccgctccacccccttcatcgaatgcaatggcgcccgcggcacgtgc
cactactttgccaacaagtacagcttctggctgaccatcgtggaggagggccagcagttt
gtggaatcgccaccctcggagacgctgaaagcgggtcagctgcgcactcgggtcagtcgc
tgtcaagtctgcatcaagtatttgtag
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