Chiloscyllium plagiosum (whitespotted bambooshark): 122557685
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Entry
122557685 CDS
T08871
Symbol
cstf3
Name
(RefSeq) cleavage stimulation factor subunit 3
KO
K14408
cleavage stimulation factor subunit 3
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Pathway
cpla03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122557685 (cstf3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpla03019
]
122557685 (cstf3)
Messenger RNA biogenesis [BR:
cpla03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
122557685 (cstf3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Suf
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
TPR_14
TPR_19
TPR_16
TPR_6
VapC50_C
Motif
Other DBs
NCBI-GeneID:
122557685
NCBI-ProteinID:
XP_043561456
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All DBs
Position
16:22119886..22235061
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AA seq
718 aa
AA seq
DB search
MSGEGNAEQAPEYVPEKVKKAEKKLEENPYDLDAWSILIREAQNQPIDKARKTYERLVTQ
FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLAYVRETKGKLPSYKE
KMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPM
INIEQLWRDYNKYEESINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQ
NSPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQY
LEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVH
SIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRSIFKKAREDPRTRHHVYVSAALMEY
YCSKDKAVAFKIFELGLKKYGDIPEYILAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEK
SGEIWARFLAFESNIGDLASILKVEKRRFAAFKEEYEGKETALLVDRYKFMDLFPCSNSE
LKALGYKDVSRNKLTAIIPDPIVTPSAVTVLKDEVDRKPEYPKPDTNQMIPFQPRHLAPP
GLHPVPGGVFPVPPASVLLMKLLPPPTCFQGPFVQVDELIEVLRRCQLPDTVEQAIELIT
GGQPEMVIEGNGPIENDAVMKKPLKRAANEDSDEEEEKGAVAPPVHDIYRARQQKRVR
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atgtccggcgaaggaaatgcggagcaggccccagagtatgttcctgaaaaagtgaagaag
gcagaaaagaaattagaagaaaatccatatgaccttgatgcatggagcattctcatacga
gaggcacagaaccaacccatagacaaagcgcggaagacctatgagcgacttgttacccag
ttcccgagctctggcagattctggaaactatacattgaagctgagataaaagcaaaaaac
tatgataaagttgaaaagttgtttcagcgatgtcttatgaaagttttgcatattgatctg
tggaaatgttatttggcctatgtgagggaaacaaaaggcaaacttccaagttacaaagag
aagatggcccaagcatacgactttgctttagataaaatcggcatggagattatgtcttat
caaatttgggttgattacattaacttcttaaaaggagtggaagctgtgggatcctatgca
gagaatcaaagaataacagcagttcgacgagtgtatcagcgaggctgtgtcaatcctatg
ataaatattgagcagttatggcgagattataataaatatgaagagagcatcaatattcac
cttgctaagaaaatgattgaagatcgtagcagggattacatgaatgctcggcgagtggca
aaagaatatgagactgtaatgaaaggtctagaccgtaatgcaccatcagtcccaccacag
aacagcccgcaggaagcacaacaggttgacatgtggaagaaatatatccagtgggaaaag
agtaacccacttcgcacagaagaccaaacgctaatcactaaacgagttatgtttgcctac
gaacaatgtctgctggttttaggacatcatcctgatatctggtacgaagccgcccagtac
ttggagcaatcgagcaaattgctggcagaaaagggggacatgaataatgcaaaactgttc
agtgatgaggctgcaaacatctatgaaagggcaatcagcactttgttaaagaagaacatg
ctgctttactttgcttatgcagactacgaagaaagtcggatgaaatatgagaaggtacat
agcatatacaataggctattggctatcgaagatatcgatccaacgttggtttacatccag
tacatgaaatttgcacgaagagctgagggtattaagtctggtcgatccatatttaaaaaa
gcaagggaagatcccagaacgcgccatcatgtctatgtctctgctgcactcatggaatat
tattgcagtaaggacaaggcagtagcctttaagatatttgagctgggattaaagaagtat
ggggacattccagaatacatattggcttacattgactatctttctcatcttaatgaggac
aataataccagagttttgtttgaacgtgtgctgacatctggatccttaccacctgagaaa
tctggagagatctgggcacggtttctggctttcgaaagcaacattggagatctggccagt
atcctgaaagtggaaaagaggaggtttgctgcttttaaggaggaatatgaaggaaaggaa
acagccttactagtggacagatacaagttcatggacttgtttccttgttccaatagtgaa
cttaaagctcttggatataaggatgtttctcgaaacaaactgactgccataattccagac
cccatagtgaccccttcagctgtaactgtactgaaggatgaggttgatcggaaaccagaa
tatccaaaacctgatacaaaccagatgataccgttccaacccagacacttagcacctcct
ggcctccatcctgttcctggaggagtctttcctgtacctccagcttctgtgctacttatg
aaactgttaccgcctccaacttgtttccaggggccatttgttcaggttgatgaactaatt
gaagttttaagacgctgtcagttaccagatactgtcgaacaagctatcgagctgatcact
ggaggccagcctgaaatggttattgaaggaaatggacctatagaaaatgatgctgtgatg
aaaaagccccttaaaagggcagcaaatgaggattctgatgaagaggaggagaaaggagct
gtggcacctcctgtgcatgacatttacagagcacggcaacagaaacgagtccgatag
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