Chiloscyllium plagiosum (whitespotted bambooshark): 122557892
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Entry
122557892 CDS
T08871
Symbol
ddb1
Name
(RefSeq) DNA damage-binding protein 1 isoform X1
KO
K10610
DNA damage-binding protein 1
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Pathway
cpla03420
Nucleotide excision repair
cpla04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
122557892 (ddb1)
09124 Replication and repair
03420 Nucleotide excision repair
122557892 (ddb1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cpla04121
]
122557892 (ddb1)
03400 DNA repair and recombination proteins [BR:
cpla03400
]
122557892 (ddb1)
Ubiquitin system [BR:
cpla04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Adoptor protein
122557892 (ddb1)
DNA repair and recombination proteins [BR:
cpla03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
122557892 (ddb1)
TCR (transcription coupled repair) factors
Cul4-CSA complex
122557892 (ddb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_RSE1_1st
Beta-prop_RIG_2nd
Beta_propel
Motif
Other DBs
NCBI-GeneID:
122557892
NCBI-ProteinID:
XP_043562019
LinkDB
All DBs
Position
16:50309755..50399236
Genome browser
AA seq
1167 aa
AA seq
DB search
MHPPGDWRRWQSWHLLAFGRGSTSKDVLIQSFNSIGKAFPAIGGGGAGHFTSADDLNLLI
AKNTRLEIYVVTPEGLRPVKEVGMYGKIAVMELFRPKGEGKDLLFILTAKYNACILEYKQ
NGENIDIITRAHGNVQDRIGRPSETGIIGIVDPECRMIGLRLYDGLFKVIPLDRDNKELK
AFNIRLEELHVIDVKFLYGCQVPTICFVYQDPQGRHVKTYEVSLREKEFNKGPWKQENVE
AEASMVIAVPEPFGGALIIGQESITYHNGDKYLAIAPPAIKQSTIVCHNRVDPNGSRYLL
GDMEGRLFMLLLEREEQMDGNVTVRDLRVELLGETSIAECLTYLDNGVVFVGSRLGDSQL
VKLNVDSNEQGSYVAGMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNG
IGIHEHASIDLPGIKGLWPLRSDSTRDTDDMLVLSFVGQTRVLMLNGEEVEETEMPGFVD
DQQTFYCGNVAHQQLIQITSGSVRLVSQEPKSLVSEWKEPNGKNISVASCNNSQVVVAVG
RVLYYLEIHPKELRQISFIEMEHEVACLDITPLAEGTSMSPLCSVGLWTDISARILKLPS
FETLHKEMLGGEIIPRSILMTTFEGSHYLLCALGDGALFYFGLEIETGLLSDRKKVTLGT
QPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSEGYPDSLAL
ANNSTLTIGTIDEIQKLHIRTVPLNESPKRICYQEASQCFGLVSSRIEVLDPSGGTTVLR
PSASTQALSTSVSSSKLFPSSTSQHESSFGDEVEVHNLLIIDQHTFEVLHAHQFLQNEYA
LSIVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIIVFQYSDGKLQTIAEKEVKGAVYSM
VEFNGKLLASINSTVRLYEWTAEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLL
AYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAENSFNLFVCQKDSAATTDEERQHLQ
EVGLFHLGEFVNVFCHGSLVMQNLGETSTPTLGSVLFGTVNGMIGLVTSLSESWYNFLLE
VQNRLNKVIKSVGKIEHSFWRSFHSERKTEPAAGFIDGDLIESFLDLSRPKMQEVAAGLQ
IDDGSGMKREATVDDLIKIVEELTRIH
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
atgcatcctcctggtgattggaggcggtggcagtcgtggcatctgctggcatttggacgc
ggcagcaccagcaaagacgtcctcattcagagcttcaacagcattggcaaagcttttcca
gcgattggaggtggtggcgctggtcacttcacctcagcagatgatttgaacctgctgatt
gccaagaacaccaggttggagatctatgtagtgacaccggagggtttgcgccctgtcaag
gaagtgggcatgtatggcaagattgctgtaatggaactcttccgcccaaagggagaaggc
aaggacttgcttttcattctgactgcaaaatacaatgcctgtattctggagtacaaacaa
aatggggaaaacatcgatatcatcacacgagctcatggaaatgtacaggatcgtataggc
cgcccctctgagactggaatcataggtattgtggaccctgagtgccgtatgatcggtctc
aggctgtatgatgggctctttaaagtgattccattggatagagacaacaaagagctaaaa
gcattcaatatccgactggaagaactgcatgtaattgatgtgaaattcttgtatggctgt
caggtcccaaccatttgctttgtctatcaggatccgcagggccgtcatgtgaagacctat
gaagtatccttaagagaaaaagaatttaacaagggaccctggaaacaggaaaatgttgag
gctgaagcatcaatggttattgcagttccagaaccatttggaggagcgctaatcataggc
caggagtccattacataccacaatggcgacaagtatctcgcaattgcaccaccagctatc
aagcaaagcacaattgtttgccacaaccgtgtggatcccaatggttcgcgataccttctg
ggagatatggaaggtcgtctgttcatgctgttactggagagggaagaacaaatggacgga
aatgtcactgtcagagacctccgtgtagaactgttgggagagacatccattgcagaatgc
ttgacatatttggataatggagttgtattcgttggatcccgtcttggagattctcagctt
gtcaagttaaatgtggacagcaatgagcaggggtcctatgttgctggcatggaaaccttc
accaatttaggtcctattgtggatatgtgtgtagtggatttggaaaggcaaggacagggc
cagctggttacttgttcaggagcatttaaggaaggctctctgagaataattcggaatgga
attgggatccatgagcacgctagcattgatcttcctggtattaaaggtctgtggccattg
cgttctgattccactcgtgacactgatgatatgttggttctctcatttgttggacagact
cgtgtgctgatgctcaatggggaggaggtagaagagactgaaatgccaggcttcgttgat
gaccaacagaccttctattgtggaaatgtggctcatcagcagctcattcagataacatct
ggttcggtgcgactggtcagtcaagaacccaaatcactggttagtgagtggaaggagcca
aacggaaagaatatcagtgttgcatcctgtaataacagccaagttgtggtagcagtgggc
cgggtattgtactacctggagattcacccgaaagagctcagacaaatcagctttatagag
atggagcatgaggttgcttgcctagacatcactccattggctgagggtactagtatgtca
cccctatgctctgttgggctttggacagatatttcagctcggatcctcaagctaccatca
tttgaaaccctgcataaagaaatgcttggtggagagataattccacgttccattttaatg
acaacatttgaaggcagccattacttgctgtgtgctctcggtgatggtgctctcttttat
tttggacttgaaatcgaaacaggtttgctgagtgatcgtaagaaagttacactggggacc
cagccaacagtcttacgaaccttcagatctttgtctaccacgaatgtttttgcttgttca
gaccgccccactgtcatctatagcagcaatcacaagcttgttttctcaaatgttaacctc
aaggaagtgaactacatgtgtcctcttaactctgagggataccctgacagcttggccttg
gccaacaacagcactttaactataggaactattgatgaaattcagaaactacacatccga
acagttccccttaatgaatctccaaaaagaatttgttaccaagaggcctctcagtgcttt
ggtctggttagcagcagaatagaagtgttggaccccagtggaggtaccactgtcctgaga
ccaagtgctagcactcaggctctttctaccagtgttagctccagtaagcttttcccaagt
agtacttcacagcatgagagctcatttggggatgaagtggaggtccacaatctactaatc
atagatcaacatacatttgaagttcttcatgctcatcagttcctgcagaatgaatatgca
ctaagtattgtgtcctgcaagttgggcaaagatcccaatacttacttcattgtaggtaca
gcaatggtatatcctgaagaagcagaaccaaaacaaggacgtattatagtattccagtac
tctgatggcaagcttcagacaatagcagagaaagaagtaaaaggtgccgtgtattctatg
gtggagttcaatggcaagttgctagcaagcatcaatagcacggtgcgattatatgaatgg
acagctgaaaaagagctacgcacagagtgcaatcactacaataatatcatggccctctat
ctgaaaacaaagggagactttatcttagtaggagacttaatgcgttcagtgctgctgctt
gcctataaaccaatggaagggaattttgaagagattgcccgagatttcaaccctaattgg
atgagtgctgttgaaatactggatgatgacaacttcctgggtgctgaaaactctttcaac
ttatttgtgtgtcagaaagacagtgcggctacaacagatgaagaaaggcaacacctccaa
gaagtggggttgttccaccttggcgagtttgttaatgtgttctgtcatggatctctggta
atgcagaatcttggtgagacttccacacctacactgggttcggtattgtttggtacagtc
aatggcatgattggcctggttacctccttgtctgagagctggtacaacttccttttggaa
gttcaaaatcgactgaataaagttatcaaaagtgtgggcaagatcgaacattcattctgg
agatcgtttcactcggagagaaaaactgaacctgctgcaggtttcatagatggagacctt
atcgagagcttcttagatctcagtcgacctaaaatgcaggaagtggctgcaggcttacag
attgatgatggaagtggaatgaagagagaagcaactgtagatgatctgataaaaattgtt
gaagaattgaccagaatacattga
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