Chiloscyllium plagiosum (whitespotted bambooshark): 122557936
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Entry
122557936 CDS
T08871
Symbol
ighmbp2
Name
(RefSeq) DNA-binding protein SMUBP-2
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cpla03009
]
122557936 (ighmbp2)
03012 Translation factors [BR:
cpla03012
]
122557936 (ighmbp2)
Enzymes [BR:
cpla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
122557936 (ighmbp2)
5.6.2.5 RNA 5'-3' helicase
122557936 (ighmbp2)
Ribosome biogenesis [BR:
cpla03009
]
Eukaryotic type
Other ribosome biogenesis factors
122557936 (ighmbp2)
Translation factors [BR:
cpla03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
122557936 (ighmbp2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_11
AAA_12
SMUBP-2_HCS1_1B
R3H
AAA_30
AAA_19
zf-AN1
Viral_helicase1
DEAD
ResIII
nSTAND3
NAT10_TcmA_helicase
UvrD-helicase
AAA_22
AAA_16
Flavi_DEAD
IstB_IS21
ATPase
nSTAND_NTPase5
AAA_25
SLFN-g3_helicase
Zot
ABC_tran
NPHP3_N
AAA
PhoH
UvrD_C_2
nSTAND6
SRP54
DIRP
NTPase_1
Motif
Other DBs
NCBI-GeneID:
122557936
NCBI-ProteinID:
XP_043562103
LinkDB
All DBs
Position
16
Genome browser
AA seq
1021 aa
AA seq
DB search
MENFVSQSVELLQEERAAEIEETRTWQENVSVKELQRRGVCLLRLQVSSQRTGLYGRFLV
SFEPRKFEASAALPSNNFSSGDIVGLYDSQGSTPLDQLASGIVTRITQNCITVAFDEPSD
QLNFDVSSSFKLLKLANDVTYKRLTRALKALSQCHAGPVSKLIDVLFGTSEPSSPSEILK
IPELYNPNLDDSQREAIHFALSQKEVAIIHGPPGTGKTTTIVEIILQAIKQGLKVLCCAP
SNVAVDNLVERLAQFKTQILRLGHPARLLESIHRHSLDAILANSDNTQIVMDIRKDIDQA
FAKLKKTQERGEKAHFRGEIKTLRKELRTREEAAIVQILKKASVVLATNTGASNDGPLKL
LSDDYFDLVVIDECAQALEASCWIPLMKAPKCILAGDHKQLPPTIISDKAAANGLSLSLM
ERLIQRFGDQMVRMLTVQYRMHSSIMEWASKQMYCGRLTAHKTVAHHLLKDLPGVSLTEE
TKVPLLLIDTAGCGLLELDEEDEQSKGNSGEVQIVTLHIQALIEAGVRPQDIAVIAPYNL
QVQLLRKELSKKYPELEIKSVDGFQGREKEAVILSLVRSNRTGEVGFLAEDRRINVAVTR
ARRHLMVVCDTRTVSTHLFLKSLVDYMTEHGETRTAFEYCDDIVSENYSRPAPRAEHRKA
KDSSDARRNNGSSTSDRSAASLKTHKLTQNQPTQKLGCKVKVSNDSRSLKQKKDASPGTL
HQPAKTANVKDNSEKLREQIMQFMEDITRTRFEFPSSLNSHDRLLVHQIAEEFGLEHFSI
GESKDRFIVIAKSETQSPVDGQPVQTMLEVTQKSSSPAPHIAEENERTVTEIEGPQDCAP
SVSQSKVDLKALYLERMQWEQAKREMAKPKQHSSTTASLKSKNKKHIEKGKVSTKEAAAS
NADEDFDALIAETIKANSVCAFLKCKASILTLGQHCIHCNKHYCLSHHIPEVHGCGGSAK
AHARKLISREGILYAGSGTKDHSLDPVKKAHLQRRLGKKIDQLASQRGAKKETTKKNFGE
L
NT seq
3066 nt
NT seq
+upstream
nt +downstream
nt
atggaaaactttgtgtctcaaagtgtggagctattacaagaagaaagagctgctgaaatt
gaagagacgaggacttggcaggaaaacgtctctgttaaagaactccagcgacgaggggtc
tgcctactaaggctgcaggtatcaagccagagaaccggactgtatggacgctttcttgtt
agctttgaaccaagaaagtttgaggccagtgcagcgctacccagcaataacttcagctct
ggagatattgtgggtctgtatgacagccaaggctccactccactggaccaacttgcatct
ggcattgtgacgcgcatcacacaaaactgtatcactgtagcttttgatgaacccagtgat
cagttaaacttcgacgttagctcttcctttaaacttctgaaactggctaatgatgtaaca
tacaaaagattgacacgtgctttaaaggccttgagccagtgtcatgctggacctgtttcc
aaactcatcgacgtcctgtttggcacttctgagccaagttctccctcagaaattctaaaa
atcccagaactgtacaatcctaacctggatgactctcaaagagaagcaatacattttgca
ctctcgcagaaggaagttgcaattatccatgggcctcctggtactggaaagacaaccaca
attgtggaaataattctacaggctataaagcaaggtctgaaggtgttgtgctgtgctccc
tcgaacgttgctgttgacaaccttgttgaacgtctagcgcaatttaaaacacagattttg
cgtttaggtcaccctgcacgactgcttgagtccatccatcgtcattctttggatgcgata
ttagctaacagtgacaacacccaaatagtaatggacatccgaaaggacattgatcaggct
tttgcaaaattgaaaaagacacaggagagaggagagaaagcgcattttcgtggtgaaatc
aagactttgagaaaggagctgagaacgagggaggaggcagctatcgtacaaatacttaaa
aaagccagtgttgtgttggcaactaacacaggtgcctcaaatgatggtccattaaaactt
ctgtcagatgattactttgatcttgtggtgattgatgaatgtgcacaggcactggaagca
agttgttggataccattaatgaaagccccaaaatgcatcctggctggggatcacaaacaa
cttcctccaaccatcatttctgacaaagctgcagctaatggcctatcactcagcttgatg
gagcgactaatccagagatttggtgatcagatggtgagaatgctgactgtacagtatcga
atgcatagttccataatggaatgggcctccaaacagatgtactgtggacgactcacagct
cacaagacggtggcgcatcacttgctaaaggatctacctggagtttctttgacagaagag
acgaaggttccactgcttctgatagacaccgcaggatgtggcttgcttgaacttgacgaa
gaagatgaacaatccaaaggaaatagtggggaggttcaaattgtgactctgcacattcaa
gccctgattgaagctggtgtccgcccacaggatattgctgtgatagctccatataatttg
caggtccaactcctgaggaaagaattgtctaaaaagtatccggaactggaaatcaagtct
gttgatggtttccaaggaagagaaaaagaggcagttattttatcacttgtgagatccaac
agaacaggcgaggtgggctttctggctgaagaccgaagaataaacgtagcagttacccgt
gcgcgccgccacttgatggtggtttgtgacacacggacagtcagcactcacctgtttttg
aaatccctggttgactacatgactgaacatggggaaacgcggactgcttttgagtactgt
gatgatattgtgtctgaaaattactccaggccagcccctcgggctgaacataggaaagca
aaagattcttcagatgcacgcagaaataatgggagctcaaccagtgacagaagtgcagca
tctctaaaaacacacaaactcacacaaaatcaacccactcaaaagcttgggtgtaaagtg
aaagtctcaaatgacagtcgttccttaaagcaaaaaaaggatgctagtccaggaacatta
caccaacctgcaaaaactgcaaatgtaaaagataactctgaaaaactcagggaacaaata
atgcaatttatggaggatattacaaggactcgatttgaattcccatcatctttgaattca
catgatcggttgttggttcaccaaatagcagaagagtttggccttgaacattttagcatt
ggtgaaagcaaagaccggtttattgttatagccaaatcagaaacacaaagtcctgttgat
ggccaaccagtccaaacgatgctggaagtgactcagaaatctagcagtcctgccccacac
atagctgaggaaaatgaacgtactgttactgaaatagaagggccacaagattgtgcccct
tctgtttctcaatcaaaggtagatttaaaggcactgtacttggaaaggatgcagtgggaa
caagctaaacgcgagatggcaaaaccgaaacagcattctagcactactgcttcattgaag
tctaaaaataagaaacatattgaaaagggaaaagtctcaactaaggaagctgctgcaagt
aatgctgacgaagatttcgatgcgctcattgctgaaacaataaaggcgaatagtgtttgt
gcttttttaaaatgtaaagcaagtattctaaccttggggcaacattgcattcactgtaac
aaacactactgcctcagccatcacatcccagaggttcatggttgtggtgggagtgccaaa
gctcacgcccgaaaactcatcagcagagaaggtattctatatgcaggcagtggcactaag
gaccattcattagatccagtgaagaaagcccatctgcagagaagactaggaaagaaaata
gatcaattagctagccaacgaggtgctaaaaaggaaactacaaaaaaaaattttggtgaa
ctataa
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