Chiloscyllium plagiosum (whitespotted bambooshark): 122558078
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Entry
122558078 CDS
T08871
Symbol
rag1
Name
(RefSeq) V(D)J recombination-activating protein 1
KO
K10628
V(D)J recombination-activating protein 1 [EC:
2.3.2.27
]
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Pathway
cpla04068
FoxO signaling pathway
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09130 Environmental Information Processing
09132 Signal transduction
04068 FoxO signaling pathway
122558078 (rag1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cpla04121
]
122558078 (rag1)
Enzymes [BR:
cpla01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
122558078 (rag1)
Ubiquitin system [BR:
cpla04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
122558078 (rag1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RAG1
RAG1_imp_bd
zf-RAG1
zf-C3HC4
zf-C3HC4_2
zf-C3HC4_3
zf-RING_2
zf-RING_6
zf-RING_UBOX
zf-RING_5
zf-RING_10
Motif
Other DBs
NCBI-GeneID:
122558078
NCBI-ProteinID:
XP_043562332
LinkDB
All DBs
Position
16:complement(20399049..20402068)
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AA seq
962 aa
AA seq
DB search
CDPSKNQSCDFSQIKAKSLEEHILRLQNLCRICGVAFNTYCHDMKYPVNGPVDDVTQEVL
RKMGYGECFWPELIRNTFRIDVKTDTEARYPTHFCYNCWRIVIQTINNTTNEDAFFPISA
IVEWKPHSNLCSICNFLSGARKRKGLKRSPPVTKKPKVTTDAPVRPRVIKRKDQLTSTSL
LLARKIVNCKKFHLTSKLLVLDYPNNFIQSVSCQVCEHLLADPVQSPCKHLFCRTCILKC
IAVLGKYCPVCRFPCGPKELLSPVKSFINVLNSLVLKCPATDCEMEVRLGEYSNHAQNHK
ETRMKNAYSPVNKGGRPRLHLLSLTRRAQKHRLRDLKLQVKAFADKEEDGDVKSVCLTLL
LLALRAGNEHRQADELEAVMQGKGSELKPAVCLAIRVNTFLSCSQYHKMYRTVKATTGKQ
IFQPLHALRNAEKILLPGYYSFEWQPPLANVSTNTEVGIIDGLSGWTQCIDDYPMETISR
RFRYDVALATTVKELEDDILEGLKRHSVDEFVSGPFTVVIKESCDGMGDVSEKHGCGPPV
PEKAVRFSFTIMSISVMNNNDEKVVILEELKPNSELCCRPLSLMLADESDHETLTAILGP
VIAEREAMKTSDLILEIGDLHRSFRFIFRGTGYDEKLVREMEGLEASGSMFVCTLCDSTR
YEASQNLVFHSITRSHEENLVRYEIWRSNPYCETAEELRDRVKGVSAKPFIETQPSIDAL
HCDIGNATEFYKLFQDEIGELYKNPNTSKEERKRWQAMLDKHLRKKMNLKPVMRLNGNFA
RKLMTKETVEAVCELIPSEERRQILRELMHLYLQMKPVWRSTFPARECPDLLCQYSYNSQ
RFAELLHTEFKHRYKGKITNYLHKTLAHVPEIIERDGSIGAWASEGNESGNKLFRRFRKM
NARQSKSYELEDILKHHWLYTSKYLQRFMEVHNTLKDIKCATVEPELISAEDTIPNDNSF
DF
NT seq
2889 nt
NT seq
+upstream
nt +downstream
nt
tgcgacccatcaaaaaaccagtcctgcgactttagccaaataaaagcaaaatctttggaa
gagcatatattgcgattgcaaaatctctgtcgcatttgtggagttgcctttaacacctac
tgtcatgatatgaaatacccagtgaatggtcctgttgatgatgtcacccaagaggtgctc
aggaaaatgggatatggtgagtgtttttggccagaactcatccgtaacacatttaggatt
gatgtcaagacagatacagaagccagatatcccactcacttctgctataactgttggcgt
attgtgattcagacaattaacaatacaacgaatgaagatgcattctttccgatcagtgca
atcgttgagtggaaaccacattccaatctttgcagcatttgcaactttttgagtggggcc
cgcaaacgaaaaggtctgaaacgaagtccaccagtcacaaagaagcctaaagtcacaact
gatgctccagtcagaccaagagtcattaaaagaaaagatcagttgactagcacaagtttg
ttattggccagaaagattgtcaactgcaagaagtttcatctaacttcaaaactccttgtg
cttgattatcccaataattttatccagtccgtgtcatgtcaggtttgtgagcacttactt
gctgaccctgtgcaatcaccttgcaagcacctgttctgcagaacgtgtatcctcaaatgc
attgctgtcctaggcaagtattgcccagtttgtagatttccttgtggtcccaaagagctc
ttaagccctgttaaatcattcataaatgttctcaattcacttgtactcaaatgtccagca
actgattgtgaaatggaggtgagactcggtgaatattcgaatcatgctcaaaaccataaa
gaaacgagaatgaagaacgcttactcaccagtgaacaagggaggtcgtccaagactacat
ttgctttctctcacccgaagagctcaaaagcatcgtctgagagatctgaaacttcaggtg
aaggctttcgcagacaaagaggaagatggtgacgtaaaatccgtttgcctgactctgtta
cttctggcactcagagctggcaatgagcacaggcaagcagatgagctggaagcggtaatg
cagggcaaaggatccgaactgaagccagcagtctgccttgccattagagtgaacacattt
ctgagttgcagtcagtatcataaaatgtacaggacagtcaaagcaacaactgggaagcag
atcttccagccattgcatgctcttcgaaatgcagaaaaaatactgttgccaggttattat
tcatttgagtggcagccccctctggcaaacgtctcgacaaacactgaagtgggaattata
gatggtctgagtggatggacacaatgtattgatgattatccaatggaaaccatttcaaga
cggtttaggtatgatgtggcacttgctacaacagtgaaggagcttgaggacgatattcta
gaaggtttaaaacgccatagcgtagacgagtttgtgagtggaccgtttactgttgtaatc
aaggagtcttgtgatggaatgggcgacgtcagcgagaaacacggatgcggtcctcctgtt
ccagaaaaggcagtgaggttttcctttacaatcatgagcataagtgtgatgaataacaac
gatgagaaagtggtaattttagaggagttgaagcctaattctgagctgtgctgccgacca
ctttccctgatgttggcggacgaatctgaccacgaaacgttgacagcgatcctgggccca
gtaatcgccgagcgagaagctatgaagactagtgatttgatccttgagattggggacttg
cacagatccttccggtttatctttaggggcacagggtatgatgagaagcttgttcgggaa
atggaaggcctcgaagcctcgggctcgatgttcgtctgtacgctgtgtgattccacacga
tatgaggcttcccagaacctggtttttcattccataacaaggagccacgaagagaacttg
gtgcgctacgagatttggcgctccaacccgtactgcgaaaccgcggaggagttgcgtgac
cgggtgaagggggtttcagcaaagccattcatcgaaactcagccgtccatcgatgccttg
cactgcgacattggaaacgccaccgagttctacaagctcttccaggacgagattggggag
ctgtacaaaaatccgaacacctccaaggaggagaggaagcggtggcaagcgatgcttgac
aagcacttaaggaagaagatgaacctgaagcctgtcatgaggctgaatggaaattttgca
cggaagctaatgactaaagagacggtcgaggctgtgtgtgaactgattccgtctgaagaa
aggcggcaaatcctcagggagctcatgcacctttatcttcagatgaaaccagtgtggcgt
tccacgtttccagccagggagtgtcctgaccttctttgtcagtacagctacaattcccag
agatttgcagaactgcttcatacagagttcaagcacagatacaaagggaagatcaccaac
tacctgcacaaaacactggctcacgtccccgagatcattgaaagagatggctctataggt
gcgtgggcgagtgaaggcaatgaatcaggcaacaaactcttccggcgtttcaggaaaatg
aatgcaaggcagtccaaaagctatgaattggaagacattttgaagcatcactggctgtac
acttcaaaatatttgcaacggttcatggaagtacacaatacgttaaaggacatcaagtgt
gcaactgtagaacctgaactgatcagtgcagaagatacaatacctaatgataattcattt
gatttttag
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integrated database retrieval system
