Chiloscyllium plagiosum (whitespotted bambooshark): 122558454
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Entry
122558454 CDS
T08871
Symbol
ctcf
Name
(RefSeq) transcriptional repressor CTCF isoform X1
KO
K23195
transcriptional repressor CTCF
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cpla03000
]
122558454 (ctcf)
03036 Chromosome and associated proteins [BR:
cpla03036
]
122558454 (ctcf)
Transcription factors [BR:
cpla03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
122558454 (ctcf)
Chromosome and associated proteins [BR:
cpla03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
122558454 (ctcf)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-H2C2_2
zf-C2H2
zf-C2H2_4
zf-C2H2_16
zf-H2C2_5
zf-C2H2_jaz
zf-C2H2_REST
zf-C2H2_ZNF142_18
Zf-C2H2_ZNF451_C
zf-C2H2_ZN142
zf-C2H2_7th_ZNF462
zf-C2H2_15
Zf-C2H2_ZNF451
zf-met
zf-C2HE
zf-C2H2_6
LIM
zf-WIZ
HMBD
DUF7479
Motif
Other DBs
NCBI-GeneID:
122558454
NCBI-ProteinID:
XP_043562987
LinkDB
All DBs
Position
17:51686557..51728431
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AA seq
726 aa
AA seq
DB search
MYSSAMATESENVAVEESEMFTKVKEHKTYQRRREGGQPEDVDGQQKESEGGEVAAENMN
SNVQVVMMQPLDPTLLQMKQPIEGGAHESDTVDDTQIITLQVVNMEEQPINLGELQLVQV
AQSSIDELQGNYENEAPKDGLQEGDPVICHTLPLPEGFQVVKVGANGEVETVEDGAIEVR
ENEDASAAWQKDPDYQPPVKKVKKKKNKLRYKVDDSKDVDLSVYDFEEEQQEGLLSEVNV
EKAVGTMKPPKPMKIKKKGVKKTFQCELCSYTCPRRSNLDRHMKSHTDERPHKCHLCGRA
FRTVTLLRNHLNTHTGTKPHKCPDCDMAFVTSGELVRHRRYKHTHEKPFKCSMCDYASVE
VSKLKRHIRSHTGERPFQCSLCSYASRDTYKLKRHMRTHSGEKPYECYICHARFTQSGTM
KMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYLESGKKCRYCDAVFHERYAL
IQHQKSHKNEKRFKCELCDYACKQERHMVMHKRTHTGEKPYSCSQCDKTFRQKQLLDMHF
KRYHDPNFIPATFVCTKCGKAFTRKNTMTKHAENCSGPGGEEGDAVERKKNKGRGRKRKM
QSKKGDSTDSDDEDNAEPELDGDEEDETVVSKPEEEEEEEEQPIAEVIPVPTPAKKRRGR
PPGKANQSNKNTGAVQQLQESGTTTIENIIVEIKKEPEAEDVQVQSGIEAQNGDITPEMI
LSMMDR
NT seq
2181 nt
NT seq
+upstream
nt +downstream
nt
atgtattcttctgccatggcgactgaatcggaaaatgtggctgtggaagagtccgaaatg
tttacgaaggtcaaagagcacaaaacttatcaaagacgacgagaaggtggacagccagaa
gatgtcgatgggcaacagaaagaatcggagggtggtgaggtagcagcggaaaatatgaac
agcaatgtgcaagtggtgatgatgcagccattggaccctacactacttcaaatgaagcag
ccaattgagggtggagctcatgagtcagacactgtagatgacacacagattatcacattg
caggttgtgaatatggaagagcagccaataaatcttggggagctgcagctcgtgcaggta
gcccaaagcagcattgatgaactgcaaggaaactatgaaaatgaagctcccaaagatgga
cttcaggaaggagatcctgtaatctgtcatactcttcccctaccagaaggctttcaggtt
gtgaaagtaggtgccaatggtgaagtggagacagtggaagatggtgcaatagaagtgcga
gaaaatgaggatgcatctgctgcctggcagaaagatcctgattatcagccacctgtaaaa
aaagtcaaaaagaaaaaaaataaactacgttacaaggtggatgattccaaagatgttgac
ttatctgtatatgattttgaagaggaacagcaggaaggtttactttcagaggttaatgta
gagaaggcagttggaactatgaagcctccaaaaccaatgaagattaagaagaaaggggtg
aagaaaacattccagtgtgaattgtgcagctatacttgtccccggcgttctaatctagac
cggcacatgaaaagccacactgatgagcgaccgcataagtgccacctttgtggtcgagct
tttcgaacagttacacttctgaggaaccatctcaacacacatacaggtactaaaccacac
aagtgtcctgattgtgacatggcatttgtgaccagtggggagttggtgaggcatcgtcgc
tacaaacacacacatgagaagccattcaagtgctctatgtgtgattatgctagtgtggag
gttagtaagttaaagcgtcatattcgctctcacactggagaacgcccgttccaatgtagc
ctgtgtagctatgctagcagggatacctacaagctgaaaaggcacatgaggacccactct
ggtgagaaaccatatgaatgctacatctgccatgctcgcttcactcaaagtggaacaatg
aagatgcacattttgcagaaacatacagaaaatgtggcgaaattccactgcccacattgt
gacacagttattgctcggaagagtgatttgggtgttcatctgagaaaacagcattcctat
cttgagtcaggcaagaagtgccgttactgtgatgcagtcttccatgagcgatatgccctc
atacagcaccagaaatctcataagaatgagaaacgttttaaatgtgaactttgtgattat
gcatgcaaacaggaacgtcacatggtgatgcacaagcgaactcatactggagagaagcct
tattcctgtagccagtgtgacaagacgtttcggcagaaacaactattggacatgcacttc
aagcgctaccatgatcctaattttattcctgccacttttgtatgcacaaaatgtggcaaa
gcattcactcgtaagaatacaatgacaaaacatgctgagaattgtagtgggccaggaggt
gaagaaggagatgctgtagagcggaagaagaataagggacgtgggaggaaacggaaaatg
cagtccaagaaaggagactccactgacagtgatgatgaggataatgctgaacctgaatta
gatggtgatgaagaggatgagactgttgtgagcaaacctgaagaagaggaagaagaggag
gagcagcctattgcagaagtcatccctgtaccaacaccagccaaaaagcgaaggggtaga
ccacctggcaaagctaatcaatccaataaaaatactggagcagttcaacagttgcaagaa
tcagggactacaacaattgaaaacataattgttgaaataaagaaagagcctgaggctgaa
gatgtgcaagttcaatcaggaattgaggctcaaaacggagacatcacacctgagatgatc
cttagtatgatggaccggtga
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