Chiloscyllium plagiosum (whitespotted bambooshark): 122558469
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Entry
122558469 CDS
T08871
Symbol
edc4
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Pathway
cpla03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122558469 (edc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpla03019
]
122558469 (edc4)
Messenger RNA biogenesis [BR:
cpla03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122558469 (edc4)
mRNA degradation factors
5'-3' decay
Decapping complex
122558469 (edc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
Beta-prop_EDC4L
CelTOS
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
WD40_CDC20-Fz
WD40_Prp19
WDR55
Beta-prop_EML_2
Pdc1_Ge1
EIF3I
Motif
Other DBs
NCBI-GeneID:
122558469
NCBI-ProteinID:
XP_043563028
LinkDB
All DBs
Position
17:52791691..52907037
Genome browser
AA seq
1400 aa
AA seq
DB search
MASPPSPASKMDIENATQHLRDMLKLDRVSESTIDKQKKSASYNGELNGLLVPDPIAAGD
GPILRESNSANLDKLNLQQNQEIYLTGDDSSNCVITAKEVEIVASNDSSISNKARGSNKV
KIQPVAKYEWEQKYYYGNLIAVSNQYLAYVIRGANGVGMVRVLSVGMAERTLLKGFTEGV
ADLGFAHLNSNQLACVDEAGNLFVWQLNEENGKIQEKLIVHIKRPEGTPLNANRRVIWCP
FIPEENDENDEGNQTLAVLHEDRAEVWDLDILRNSNSVWPIEATDIKEGFIIVKGHTARI
SEGALSPDGTVLATASHDGYVKFWQIYIEGQDQPRPSARCLHEWKPHDGRPLSCLLFCDN
HKKQDPDVPFWRFLITGADQNRELKMWCTVSWTCLQTIRFMPDPFNTNVYPSLKASLDLS
AEYLILSDVQRKVLYVMELHQNQDEGKAHFVSISEFLLTHPVLSFGIQDVSRCRPRHIEV
LSAEEESDTLNAEGTPGLVESSIVQLKLYCVHTKTLQDVQIYFQPHQNTEEPVLMSSAAS
HEDFTFADRLTDVSVEGPTSEKGSSRDSQHDLRRIVDLPVPTDFLSVSNDVKPKLMTPDA
FMTPSTSLQQISVSPGSSVSTLTAVTGLTNSSANETGSSRPAEDLCLSPKVTLENVNLSN
NTSNTVQASPRNNSVQLIPGLSEQLSTKPLQVTGANSSLPLELQSVDPLCVPQSSPTRER
SPDVISSASTALSQDIPEIASETLQRAFSSSVLPTEVLEPTHHMDSMASAASALHLLSPR
SRPNSEHSHHSLDMPQVEVERLSTPSLLETVLSQENTAADSIVSQPWPAAPDITRETRNS
INESSREDMQEKHKNSAFHRHPYQLHQHDSQDASAEQSDHDDEVASLASTSCSFGSKSAS
HRLPIKDWKSKTSPRSSPKLRRKSKKDDGETAQSPRLEQQQQFNTDQEELLSLLRSQQRE
LSELRQSQLELMQRLTDHMDAVQGSIMGHVERIMVTQQEQEQRRMDRILAEGHERNGQFQ
EQFSHQLSQNLANSISNRIEKTVRDEMKKTLPQSISKSLEPVSGQLNNHIATKLAAIEGI
LKENITKMVKSKNTVESIGRAAADALQGPIQSSYKESFQSIVVPVFEKACQSMFQQINDS
FKQGTQEYIQQLEIHLQSKKTQEQEIRDPLISQLQQMIDRFQSVTDHLAATITNGMRSEM
QHQLHIIVSNLQESILTQVQRIVKGEVSLAMKEQQAVVTSSIMQAMRSAAGTPIPTTHMD
FQSQQAHILQLLQQGQLNQAFQQALTAADLNLVLYVCETVDSQLVFGQNPCPLTQPVLLS
LIQQLSTDLNSRTELKLSYLEDAVMNLDHTDPVARDHMGSVLNQVRQKLYQFNQAEPHSN
LSKRARRLMMMLQGLVTPLS
NT seq
4203 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcgccaccgagcccggcttctaagatggatatcgagaatgccactcaacacctc
cgcgatatgctgaagctggaccgggtctccgagtcaacaattgataagcagaagaaatct
gcatcgtacaatggagaattgaatggtttgctggttccagatccaattgcagctggagat
gggcccattctcagagaatcaaacagtgcgaatttggacaagctgaacctacagcaaaat
caggaaatttaccttacaggtgatgacagttcaaattgtgttataactgccaaagaagtg
gaaattgtggcaagcaatgattcgagcatcagtaataaggccaggggtagcaacaaggta
aaaatacaacctgtggcaaagtatgaatgggagcagaaatattactatggcaacctcata
gcagtgtcaaatcagtacctggcatatgtcatcagaggggctaatggtgttggcatggta
cgagtattgagtgttggaatggctgaacgaactttgctgaaaggatttaccgagggagtt
gctgatttgggttttgcacatctcaattccaatcaactggcatgcgttgatgaagcaggc
aacctatttgtctggcaactaaatgaagaaaatgggaaaatacaggaaaaactcatagtg
cacatcaagagaccagagggaacacctttaaatgcaaacaggagggttatctggtgccct
tttattcctgaggaaaatgatgaaaatgatgaaggaaatcaaacacttgctgttttacat
gaagatagggctgaagtctgggatctggatattctacgaaacagtaatagtgtttggccc
attgaagcaactgatataaaagaaggctttatcattgtgaaaggtcacacagcacggatc
agtgaaggtgcgttatctccagatggaacagtacttgcaactgcgagccatgatggttat
gtaaaattctggcagatctacatagaagggcaagatcaaccaaggccttctgccagatgt
cttcatgaatggaagccccatgatggccgaccattatcatgcctacttttttgtgacaat
cacaaaaagcaagatccagatgtccctttctggcgtttccttatcactggagcagatcag
aatagggagctgaagatgtggtgtacagtgtcatggacttgtttacagaccatcaggttt
atgcctgacccttttaataccaatgtgtacccaagtctgaaagccagtctggatctatct
gcagaatacctcatcctcagtgatgtacagagaaaagtgttatatgtgatggagctacat
cagaaccaggatgaaggcaaagcccattttgtctccatatctgagtttttgctgactcac
ccagtacttagctttggcatccaggatgtcagtaggtgtcgcccaaggcatatcgaggtt
ctgtcagctgaggaggaaagtgacactttaaatgcagaaggaactcctggccttgttgaa
tcttcaatagtacagctaaaactgtactgtgtgcacaccaaaacacttcaggacgtgcag
atttatttccaaccacatcagaatacagaagaacctgttttaatgtcatctgctgcctcc
catgaagattttacttttgcagatcgcttaacggatgtgagtgttgaagggccaacatct
gaaaagggatctagcagagattctcaacatgatttgcggcgtatagtggatcttccagtt
cctacagactttctttctgtctctaatgatgtgaaaccaaagttaatgactccagatgct
ttcatgactcctagcacttcacttcaacagatctctgtgtcaccgggaagcagtgtaagc
actttgactgcagtgactggtttgactaacagctctgctaatgagactggatcatcaaga
cctgctgaagacttgtgtctaagcccaaaggtcacattggagaatgtcaatctcagtaat
aacacaagtaatactgtccaagctagtcccagaaacaactctgtgcaacttattccaggg
ctctctgagcagctatctacaaaacctctccaggttactggtgctaactcttcgcttcct
ttggagcttcagtctgtggatcctctttgtgtgcctcagagttccccaacacgggaacgt
tctcctgatgtcatctcctcagcctccacagcattgtcgcaggacattcctgaaattgcc
tcagaaaccctccagcgtgcattttcaagctctgtactacccactgaagtcctggaacct
acccatcatatggacagcatggcttcagctgcctctgcactgcatctgttatccccaaga
agtagacctaactcagaacatagtcatcactctctagatatgcctcaggtggaggtggag
cggctgagtactccgtcactcttagaaactgttttgtctcaagagaatacagcagcagac
agtattgttagccaaccttggccagcagcacctgacattactcgtgaaactcgtaatagc
atcaatgagagttccagagaagatatgcaggagaaacataagaactcagcctttcacagg
catccataccagttgcaccagcatgatagccaggatgcgagtgctgaacagagtgaccat
gatgatgaagtagcaagtcttgcttccacatcgtgtagctttggttcaaagtctgcttct
catagacttccaattaaagattggaaatcaaagacatcccctcgatcctctcccaaactg
agaagaaagagtaaaaaggacgatggggagacagcgcaatccccacggttagaacaacag
cagcagttcaacacagaccaggaagagttgctatctctgttacggagccaacagagggag
ctctctgaattgcgccagagccaactggagcttatgcagaggctgacagatcatatggat
gcagtccagggttccattatgggtcatgtggaacggattatggtcacacaacaagaacaa
gaacagagacgaatggataggatcttggcagaagggcatgaaagaaatgggcagtttcag
gaacaattttctcaccaactctctcaaaacttggcaaattctatcagtaatcgtatagag
aagactgttcgagatgagatgaagaaaactttaccacaatctatttccaaaagtttggaa
ccagtgtcgggtcagctgaataaccatattgcaaccaagcttgcagcaattgaaggaata
ttaaaagagaatataacaaaaatggtaaaatcaaagaacactgtggagagtattggaaga
gctgcagcagatgccttgcaaggaccgatacaatcaagttacaaagaatcgttccagagt
atagttgtacctgtgtttgaaaaagcctgccagtcaatgttccagcaaataaatgacagc
ttcaagcaggggacacaagaatatatccagcaacttgagattcaccttcagtccaaaaag
acccaagaacaagaaatccgtgatcctctgattagtcagttacagcaaatgattgatcgc
ttccagagtgtcactgatcacctggctgctaccatcacaaatggcatgcgttcagaaatg
caacatcagcttcacatcattgtcagcaacttacaggaatcgattctgactcaagtgcag
agaattgtgaaaggtgaagttagcctagcaatgaaggagcaacaggctgttgttacatcc
agtatcatgcaggccatgcgatcagctgcagggacgcccattccaacaactcacatggat
ttccaatcccagcaggcccacatcttgcagctgttgcaacaggggcaacttaaccaagcc
ttccagcaggctttgactgcagcagatctcaatctggtactttatgtctgtgaaactgtg
gattctcaacttgtctttggccagaatccttgtcccctgacccaaccggttttgctttca
cttattcaacaactttccaccgatctcaattcacgcacagaactaaaactgagttacctg
gaagatgcagtcatgaatctagatcacacagacccagttgctagggatcacatgggttct
gtattgaatcaagtcagacagaaactgtaccagttcaaccaggcagaacctcacagtaat
ttgagcaaaagggctcggagactaatgatgatgcttcaaggactagtgactccactgagt
taa
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