Chiloscyllium plagiosum (whitespotted bambooshark): 122559122
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Entry
122559122 CDS
T08871
Symbol
mbd4
Name
(RefSeq) methyl-CpG-binding domain protein 4 isoform X1
KO
K10801
methyl-CpG-binding domain protein 4 [EC:3.2.2.-]
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Pathway
cpla03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
122559122 (mbd4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cpla03036
]
122559122 (mbd4)
03400 DNA repair and recombination proteins [BR:
cpla03400
]
122559122 (mbd4)
Chromosome and associated proteins [BR:
cpla03036
]
Eukaryotic type
Heterochromatin formation proteins
MBPs (metylated DNA binding proteins)
122559122 (mbd4)
DNA repair and recombination proteins [BR:
cpla03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
122559122 (mbd4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MBD
HhH-GPD
Clr2_transil
Motif
Other DBs
NCBI-GeneID:
122559122
NCBI-ProteinID:
XP_043564379
LinkDB
All DBs
Position
18:60691837..60722892
Genome browser
AA seq
522 aa
AA seq
DB search
MNTVSQMELSKENILNPEMESTENTQSLSETGPITHALDNKIAQDCYPELPEGWKRIVKE
RKTGKSAGKSDVYIVSPQGKLFRSSKELKNYFQRSTREENLNPEDISVFWRGSTRERITL
DKQTSQLQATTPITQDFNTLTVDIPQTVLQDPGREEGCETEGGCSKRQRQTKVKNASKQK
AKKGAKLQNSNRQRLCSRRLTAKADQKELPPSEEKKLGDGTPLDGSQESSKAKRKASSRK
SKEQAADNKKQSRKEQAFLSKGSPEVQVEEAEESVSEVSKFNRQMALSSKEDSAADSAIS
GRSELCTSPSHCSESEIPSENTRRDTKESNGDSFTLLKTQVDNQPAPRVKMDKRKTSPYF
SRKYSEGASSPPRRKAFAKWIPPRSPFKLVQETLFHDPWKLLIATILLNKTSGKKAIPVL
WDFLERYPSAEVARVADWKEVAALLKPLGLYELRAKAITKFSDEYLTKQWRYPIELHGIG
KYGNDSYRIFCVKEWKAVKPQDHKLNKYWEWLWANQESLGLS
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atgaacactgtttcccaaatggaactatcaaaagagaatatcttaaaccctgaaatggaa
agcacagaaaacacacagtctttgtctgaaactgggcctatcactcatgctttggataat
aaaatagcccaagactgttaccctgaacttcctgaaggatggaagagaatagtgaaagaa
agaaaaactgggaagtcagcaggaaaatctgatgtttacattgtaagtcctcaggggaaa
ctatttcgatcctcaaaggaacttaaaaattactttcagagaagcaccagagaggaaaac
ctgaaccctgaagacattagtgttttctggcgaggctctactcgggaaaggatcaccctt
gataaacagacaagtcagctacaggccaccactcccataacacaagacttcaacacattg
actgttgacattccacaaactgtgttgcaagatcctggtagagaggaaggatgtgaaacc
gagggtggttgcagtaaaaggcagaggcagacaaaggttaaaaatgcctcaaagcagaaa
gctaaaaaaggtgcaaaactgcaaaactctaacaggcagaggttgtgttcaagaagattg
actgcaaaagcagaccagaaagaacttcctccatctgaagaaaagaagctgggtgatggg
actccacttgatggaagtcaagaaagttccaaagctaagaggaaagccagcagcagaaag
tctaaagagcaagcagcagacaacaaaaagcagtctcgaaaggagcaggcatttctaagc
aaaggatcaccagaagtacaagtggaagaagctgaagaatctgtttctgaagtatcaaag
tttaacaggcagatggcactgtcaagcaaggaggacagtgctgctgatagcgcaatctct
ggaagatctgaattatgcaccagcccctcacattgctcagaatctgaaattccctctgaa
aacactcgcagggacacaaaggaatccaatggggacagttttacattgcttaaaacccaa
gtagacaatcaacctgctccaagagtgaagatggataaaaggaagactagtccatacttt
tcaaggaagtattccgaaggagcatccagcccaccacggcgtaaagcctttgccaagtgg
attcctcctcgatccccattcaaactggtccaggagactctctttcatgatccttggaaa
cttcttatcgcaaccatacttctgaataaaacctctggtaaaaaggccattcctgtgttg
tgggatttcctggaaagatacccttctgcggaagttgcccgtgtagctgattggaaagaa
gtagctgcacttctgaagccacttggcttatatgagctgagagcaaaagctatcaccaag
ttttctgacgaatacctaaccaaacaatggagatatccgattgaactgcatggcattggg
aagtacgggaatgattcctacaggattttctgtgtcaaagaatggaaggcggtgaagcct
caagatcacaaactcaacaagtactgggaatggctttgggcaaatcaggagtcgttgggc
ctgtcctaa
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