Chiloscyllium plagiosum (whitespotted bambooshark): 122559623
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Entry
122559623 CDS
T08871
Symbol
rtcb
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cpla03016
]
122559623 (rtcb)
Enzymes [BR:
cpla01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
122559623 (rtcb)
Transfer RNA biogenesis [BR:
cpla03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
122559623 (rtcb)
Prokaryotic type
tRNA splicing ligases
122559623 (rtcb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-GeneID:
122559623
NCBI-ProteinID:
XP_043565353
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All DBs
Position
19:27316790..27339496
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AA seq
505 aa
AA seq
DB search
MSRSYNDELGYLDKIHKNCWRIKKGFVPNMQVEGVFYVNDTLEKLMFDELRNSCRGGGVG
GFMPAMKQIGNVAALPGIVHKSIGLPDVHSGYGFAIGNMAAFDMNNPEAVVSPGGVGFDI
NCGVRLLRTNLDEGDVQPVKEQLAQAMFDHIPVGVGSKGVIPMGAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPSKVSSKAKKRGLPQLGTLGAGNHYAEIQVVDEIYND
YAARKMGIDHKGQVCVMIHSGSRGFGHQVATDALVAMEKAMKRDNIIVNDRQLACARVNS
QEGQDYLKGMAAAGNYAWVNRSSMTFLSRQAFAKVFNTTPDDLDMHVIYDVSHNIAKVEE
HVVDGKQKTLLIHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHDAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgcagttacaatgatgagctgggttatctggataaaatccacaaaaactgctgg
aggattaaaaaggggtttgttccaaacatgcaggtggaaggtgtgttttatgtcaatgat
accctggagaaattaatgtttgatgagctgcgaaattcatgtcgtggaggaggtgtgggt
ggtttcatgccagccatgaagcagattggaaatgtggcagcattgcctgggattgttcac
aaatccattgggctccctgatgtccattcaggctatgggtttgcaattggaaacatggct
gcctttgacatgaataatcctgaggctgtggtatcaccaggtggtgtgggttttgatatc
aactgtggagtgcgtttattgcgtaccaaccttgatgaaggggatgtgcagccagtgaag
gaacagctagctcaggccatgtttgaccacattcctgtaggagtcggatccaagggagtc
atcccaatgggtgccaaagacttagaagaagctttagagatgggtgtggattggtcactg
agggaaggctatgcctgggctgaggataaggagcattgtgaagaatatggcagaatgctg
caagcagatccttctaaggtttcttcaaaggccaaaaagagaggattgcctcagctgggt
actctgggtgctggaaaccactatgctgagattcaggtggtagatgaaatctacaatgac
tatgcagcacgtaaaatgggcattgaccataaaggccaggtttgtgtcatgattcacagt
gggagcagaggttttggacaccaggttgcaacagatgccctagtggcaatggagaaagcc
atgaagagagataatattattgtcaatgacaggcagctggcatgtgccagggtcaattcc
caagaaggtcaggactatctcaaaggcatggcagcagctggaaattatgcctgggtgaat
cgctcttctatgaccttcctgtcaagacaggcatttgccaaagtcttcaacactacacca
gatgatctggacatgcatgtgatttatgatgtgtctcacaacatagccaaagtggaggag
catgtggtggatggaaaacagaagacgttgctgatccataggaagggttccactcgggcc
ttcccgccacaccaccctcttataccagttgattatcagttgactggacaacctgttttg
attggtggaacaatgggaacctgcagctatgtccttactggtactgaacaaggcatgaca
gaaacttttggaaccacctgccatggggcggggagagctttgtcacgtgcaaaatcccga
cgtaaccttgatttccaggatgtgttggataaactagcagatatgggaattgctattcgt
gttgcttcacccaaacttgtaatggaagaagcacctgaatcctacaagaatgtaaccgat
gttgtgaatacatgtcatgatgctgggatcagcaaaaaagctatcaaactgcgacctatt
gcagttataaaaggttga
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