Chiloscyllium plagiosum (whitespotted bambooshark): 122559780
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Entry
122559780 CDS
T08871
Symbol
utp20
Name
(RefSeq) small subunit processome component 20 homolog isoform X1
KO
K14772
U3 small nucleolar RNA-associated protein 20
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cpla03009
]
122559780 (utp20)
Ribosome biogenesis [BR:
cpla03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
122559780 (utp20)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UTP20_N
UTP20
UTP20_C
Motif
Other DBs
NCBI-GeneID:
122559780
NCBI-ProteinID:
XP_043565728
LinkDB
All DBs
Position
19:49618645..49730062
Genome browser
AA seq
2780 aa
AA seq
DB search
MKNKPTRHRTQNTFRFLTFSERLANVNIDIIHRIDRTGSYAEEVETYFYEGLEKWRDLNC
TDHFVNFYKEVCGITQSFNQLVYHQNTVVESLKNHLQIRSSLAYQPLLDLVVQLARDLQG
DFYPHFREFFIIITSLLNTQDTELLEWIFTCLSYLYKYLWRLMVKDITDIYSLYSSLLGH
NKEHIRCFAAESFAFLMRKAPDHNALFNFMFADLEQHSEKAEGVGQLLFDVCKGVQNTLH
SCAAKIFPAVLQKLGPVTELEAVLPWDKVGQAVHHMAKSFASYVDREHFDVVWNCLQRCI
LGLCDQLNCGDRQQGSDQIQRILQIYLVMVESGQGSKVTHPVELCETLIQTLQASQMTTS
CCEALLEVFSTLLKAQNITLPKALTVEASRKIYSCGFERKLILEFSEKIFNMCQFEQLFL
PNLLQYVEEQFALDDLSAWEETLGILVELILVKAEPPTVGSMAFEKYPLHFAGPVQVNSS
GVKNGGPVALVLDFILSLLHIPEAGERLDLAHSWAALIILPHVRPMQTEKVLDQVQLFFN
WLLATLEENDSIDEGWMYVARQAVSTILSLTESSDVLSILPVECVRNLIKKSPSNPSALL
LGDLYYTRLALCGYSDLLSQDSLLDLFTELRPNLSTSVSKVRLLSLRIMNHFKVQLRERV
EDESDGDLQSVFAILLQAELVPATVHDYREKLLHLRKLRHDLAQPCIPEGQYDEVPLQYL
IGMLYINFSALWDPVIELIVSHARGMENKAFWCIYYEHLDQAAHFTEKELKCELGEEMKD
NITSDTPSSLPDIIRGLYQDQLHMAMKSNERTDRTNFRFLLWKAMGDFADRVEPRSRELS
PLLLRFIDNEYYPADLLVAPAEDIRKKQGTDENVTAVELQDGCSAVADEIEGPDELKFAV
GKKPRRAAVKQLIAHLKVFSKFSNPRSLYLEPKLKELYIQLLCHHCQDVQKIALECLLTY
KHPHMLPYRENLQRLLEDKSFKEEVIHFSIAEETTIVSAAHRPELIPIIMRILYGRMRSK
TGSKTQGRAAAGTRMVIVLNFLAGSLSEEIHLFLDLLLEPVHHFTQGSCLCAVLQSVKTL
DMSKILPLGRQHGLLNGIDVVMKKLGHLIQDYLPKLLQITLCMCASVSHILQQRDQIQPR
CINQLKYLRRLGINQIATFFNDFESYAFTAEEIDALFHGVVWPQIGRLASEGQYAPTPLL
KLIHIWSKNSRFFPLLAKQLPDHPQLDVLTNVFALLSSKRIAEPTAVVVMDIVDSLLSMP
DFSPTAQASVLTVNDTAFLEPSTIAGESASMGICLILPHISTILRHLNKAVGNTERMKKK
KFQTQVSKDLSILSRISQFVQDKEQSTVLINLLMPYLFKPNTPQDTEIDILKTIQNLLQH
CSEPATFIKPLAALFSVIQNRLSRQTLCSIFQTLADLDSRLVYITEIVTKLNAFDRQHLD
DIDFDERLSAFQLTTKCIREMGTLDMEYLIAVMHNCFHSIRLGEMTLSDSATLCLTEIIR
RVASVDCSEDEYKEVINRTLLETLRNCLKSKIESVQQEYTTLLCCLIRTFPQRPEFQDLV
QLTDHDPDMDFFENMKHIQIHRRARALKKLAKHLDEKKITLSSKSLVNYILPFATSTLFN
ENMLKYENMTTASVELVGAACKHLSWSPYIYYLKRYIHILQTGQINQKLAVSLLLSVLQA
FHFDPESLRKEFEAVQAIENAIDMEKGDEENVAEAMELEGDVDEEKEESAETLNEGNTVC
DEGTMGEDVPVKQMKKPVTPEPKNNKELQNLIEHIQMTVTNSILPKLQKCLTAKVQRDEQ
HKLVRSKIVNDEELVRIPLAFTMVKLMQTLPKETMDSNLPSILIKVCMLLRNQAQEIRDV
ARNTLTKIIETLGPEYLLYLLKEMQSALTKGYQVHVLTYTVYMLLKSLVPRLNSGDLDPC
VDILIEIFNHELFGEIAEEKEVKGIISKVMEARSSKSYDSYQILARFVGRAQVTKLILPL
KEILESITILKQACKVQEAFRRIVTGLLLNKEMTADSILLLSHGLVTESLPLMTQRTKGQ
HKKPEASRVGLKPQSCLLLPPTPSRTGEKAATSTKTNMHILVNTGLRLLHMSLKRSKVNS
SEEHILGMLDPFVQLLIDCLQSMHVKVIISALQCLTWILKFPLASMETLADQLTQQLFVL
LKDYARAGAGRGDNFHLVVNCFKSITILVRNMTGHMITGKQLQILLGYAEEDIYDSSRQA
TAFGLLKAILSRKLLVPEMDEVMQKVAKLAVTGQSDQVRVQCRQVYLKFVLDYPLGSKLK
SHLEFIVAQLSYEHDIGRESALEMLAYIFQSFPQGLLHQYYALFFIPVTLMIVNDDSPSC
KKMAALVAQSLLSKVDEKHKDLMFSLVLTWFQSEKISHRRLAAHTCGLFVETEGTTFEKR
LGIVLPILEAAIDPGNFQDIHEEAEEKATDRLLFNLLTLTVKLVKNCNLVQLLKPHPILT
TIWGHIQAHLWHPHSWVWLTSAQLFGMLFASYQPEELVAKWNSGKALITEQNSMETPAAQ
FLLEELDRKTKLLALAFCHQLQSKFLDLTLGEQVIKNLLFVAKVIFLLESVDCGDEKVDE
KTEESEDEMGADETEEDTAGKVASDGAKGKRATLMWLIRKLCTLAKREAAHSPKISLKRT
CVFKFLGAISVNLGMEGVKPYLPVIIAPLYRELNSTYAEQDSTLRNLSQEIIELLKKLVG
LETFSLGFAAVQKQASQKKALRKRQKALQAVANPDIAARKKLKKHKNKAEAKKRKIEVLR
PGYKAKKARSSTLKDLAIVE
NT seq
8343 nt
NT seq
+upstream
nt +downstream
nt
atgaagaacaaacccacccggcaccggactcagaacacgttccggtttctcaccttctca
gaacggttagcgaatgtgaatattgatataatccatcggattgatagaactgggagctat
gctgaggaagttgaaacctacttttatgaaggcctggagaaatggagagatcttaactgc
acggatcactttgttaacttttacaaagaggtatgcggaataacccaatcttttaatcag
ttggtataccatcagaacacggtggtagaaagcttgaaaaatcatcttcaaatcaggagc
agcctggcataccaacctttactcgacctcgtggtacagttggccagagatctgcagggg
gacttctatcctcacttcagagagttctttataattataacctccttgctgaacacacag
gacacagaactgttggaatggatcttcacctgtctctcctacctgtacaaatacctctgg
agacttatggtcaaggacataacagacatttacagtttgtatagttcacttttgggccac
aataaggagcatatcagatgttttgcagccgaaagttttgctttcttaatgagaaaggct
cctgatcacaatgcccttttcaacttcatgtttgctgacctggagcaacactctgagaag
gctgagggagtgggccagctgcttttcgatgtgtgcaaaggagtccaaaataccttgcac
tcatgtgcagccaaaatcttccctgctgtcttacaaaaactgggacctgtcacagagtta
gaggctgtgttaccatgggataaggttgggcaagctgttcaccacatggccaagtcattt
gcatcctatgttgacagggaacactttgatgtagtctggaactgcttacaaagatgtatc
ctggggctctgcgaccaattaaactgcggggacaggcagcaaggctctgatcaaatccag
aggatactgcagatatacctggtgatggtggaaagtggacaggggtcaaaggttactcat
ccggtcgagctttgtgagactttgatccagacgctgcaggcttcacagatgaccacatcc
tgctgtgaggctcttcttgaggtattctccaccctcctgaaggctcagaatattactctg
ccgaaagcactgactgtagaagcttctaggaagatttacagctgtgggtttgagagaaaa
ttaattctggagttctctgaaaagatatttaacatgtgccagtttgaacagctgtttctg
ccaaacttgctgcagtatgtggaggaacagtttgcacttgatgatctatctgcttgggaa
gaaactctgggaattttggtggaactgattctggtcaaagctgagcctccgactgttgga
tcgatggcatttgaaaagtatcctcttcactttgctgggccggtgcaagtcaattcgagt
ggagtgaagaatggtgggccagttgctttggtgttagatttcatcctttcgttgctgcac
atacctgaagctggagagagattggatcttgcacatagttgggctgctctcatcattctt
ccccatgtcaggcctatgcaaacagagaaagtgttggaccaggttcagttattttttaac
tggctactggcaacccttgaggaaaatgattccattgacgaaggatggatgtatgttgct
cgtcaagcagtcagcaccattctgagtctaactgaatcttcagatgttctcagcattctt
ccagtggaatgtgtaagaaatttgattaagaagtcaccatctaacccctctgctcttttg
ctgggtgatctgtactatactcggttagcattatgtggctacagtgatctcctttcacaa
gactctctgcttgacctgttcacagaacttcggccaaatctttccacatctgtttccaag
gtgcgacttctctcactgaggattatgaatcattttaaagtgcagctacgtgaaagagtc
gaggatgagagtgatggagatcttcagtctgtctttgccatcttacttcaagctgaactt
gtccctgcaactgttcatgactacagagagaagttactgcacctgaggaagctaaggcat
gatctggcgcagccgtgtatccctgaggggcagtatgacgaggttcctcttcagtatttg
ataggaatgctttatataaacttcagtgcattgtgggacccagtgatcgaattaattgtt
tctcatgcacgtggaatggaaaacaaagcattctggtgtatttattatgaacatctggac
caggcagctcattttacggagaaggaattgaaatgtgaattgggagaggaaatgaaagac
aacattacatcggacactccgagtagtctgccagatataatcagaggattgtaccaggat
cagcttcatatggcaatgaagtccaatgagaggacagatcgcaccaacttccgcttcctg
ctttggaaagcaatgggtgacttcgctgacagagtagaacctcggtcacgggaactctct
cctttgcttctaagatttattgacaatgaatattacccagcggacttgttggttgcccca
gctgaagacatcaggaagaagcaggggactgatgagaatgtgactgctgtcgaactgcag
gatgggtgcagtgcagtcgctgatgagattgaaggtcctgacgaactcaagtttgctgtg
gggaagaagcccaggagggcagctgtaaagcaattgatcgctcacctgaaagttttctcc
aagttttccaacccgaggtcgctatacctggaacccaagctgaaggaattgtacatacag
ctgctgtgccatcattgccaggatgtgcagaaaattgccttggaatgtctgctcacctac
aagcacccacacatgctgccctacagggaaaacctccagcgactgctggaggacaagagc
ttcaaagaagaagtcattcactttagtattgcagaagaaacgaccatcgtatcagccgca
cacagacctgagctcatcccaattatcatgaggattctttatggacgcatgaggagcaaa
acagggagcaaaacccaaggccgagcagcagcagggacccgcatggtcattgttctaaat
ttcctggctggctcattatctgaggagatacacctcttcctggatctgctccttgaacca
gtacaccattttactcagggatcctgtctatgtgcagtgttacagtcagtaaagactttg
gatatgtcaaagattttacccctaggacgtcagcacggtctactgaacggcattgatgtg
gtgatgaaaaagctgggccatctaatccaagactatctgccgaaactgctccagatcacc
ttgtgcatgtgtgcgtcagtgtctcatattcttcagcaacgagaccagatccaaccgcgg
tgcataaaccagctaaaatatttgagacgtctgggaataaatcagattgctactttcttt
aatgactttgagtcctacgctttcacagcagaagagattgacgcattgtttcacggtgtt
gtgtggccacagatcgggagactcgcttctgaagggcagtatgcgccaacccctctcctg
aaactgattcatatctggagcaagaattccagattcttcccactccttgcaaaacagctt
cctgatcacccacagttggatgttctgaccaacgtctttgccttgctgtcatctaagagg
atcgcagaacctacggcggtggttgtcatggatatcgttgacagcctgttgagcatgcct
gacttctcaccaacagcacaagcaagcgtcctgactgtgaacgacacagcctttctagaa
ccttccaccattgcaggagaatcggcaagcatggggatatgtcttattctgcctcatatt
tccaccatcctgcggcatcttaacaaagctgttggaaatacagaacgaatgaagaagaaa
aaattccaaacacaagtcagtaaagatttgagcatcctttcgaggataagtcagtttgta
caggataaggaacagagcactgttttgatcaatctcctgatgccctatctctttaagcca
aacacaccacaggatactgagattgacatcctgaaaaccattcagaacctcctgcagcac
tgctctgagcccgccacgttcatcaagccactggctgcccttttctctgtcattcaaaac
aggctgtctcggcagaccctctgctccatcttccagaccttggctgatctggacagcaga
ctggtgtacattacagaaattgtcactaagttaaatgcctttgatcgacaacatcttgat
gacattgattttgatgagcgcctgtctgcattccaacttaccactaaatgtatccgagag
atgggaacattggatatggagtatctgattgcagtcatgcacaactgcttccattccatt
cggttgggggagatgactcttagtgacagcgcgacactttgcttgactgagattatccga
agagtggcttctgttgactgctcagaggacgaatacaaggaagtaatcaaccgcacttta
ctggagaccttacggaattgtctcaaatcaaagattgagagtgttcaacaggaatacaca
acgctactttgctgcttgatccggacattcccccaaagaccagaattccaggacctggtg
cagctaacagaccacgatccggatatggacttcttcgagaatatgaagcatatacagatc
cacaggagagctcgtgctctgaaaaaactagcaaagcatcttgatgagaaaaagattacg
ttatcctcaaaatctttggtgaattacatcctgccatttgctacttcaacactgttcaat
gagaacatgctgaagtacgagaacatgaccacggcatctgtggaacttgttggagctgcc
tgcaagcatctctcatggtcaccatatatttattaccttaaacgatatattcacattctg
cagactggacagatcaaccagaaacttgcagtcagtttgctactctcagtgttgcaagcc
tttcactttgacccagagagtctacggaaggagtttgaagctgttcaggcaattgaaaat
gcaatagatatggagaaaggagatgaggaaaatgtggctgaagccatggaattggaaggt
gatgtcgatgaagagaaggaagaatctgcagaaacattaaatgaaggtaacacagtgtgt
gatgaaggtacaatgggagaagatgtcccagtgaagcagatgaagaagcctgtgacccct
gaacccaaaaacaacaaggagctgcaaaatctgattgaacacatccaaatgactgtcacc
aacagcatcctgcctaagctgcagaaatgcttaactgcaaaggtgcaaagagatgagcaa
cacaagttggtgagatcaaaaatagtcaatgatgaggagttggtgcgtattccgctggct
tttacgatggttaaactgatgcagactcttcccaaggaaaccatggactccaatttacca
agcatcctcatcaaagtctgtatgctgttgagaaaccaagcgcaggagatccgcgatgtt
gctcgcaacaccctgactaaaatcattgagactctgggtccagaataccttctgtatctt
ctcaaagagatgcagtcagctttaaccaagggctatcaggttcatgttttgacctacacg
gtctatatgctgttgaagagtctcgtacccagacttaacagcggagatttggacccttgt
gtggacattctcattgagatttttaaccatgaactgtttggtgaaattgcagaagagaaa
gaagtgaaaggaattataagcaaagtgatggaagcgaggtcaagcaagagctacgactcc
tatcagattctggctcggtttgtgggaagggcacaagttactaagctgatccttccactt
aaagagatattagagagtataaccatccttaagcaagcttgcaaggttcaagaagcattt
cgtcgcattgtgactggtctgttactgaataaggaaatgacggctgactccatcctctta
ttaagccacggcctggtgacagagagcttgccattgatgacacagagaaccaaaggtcaa
cacaagaaacctgaagcatcccgtgttggactgaagccccagagttgcctcttgctgccc
cccaccccaagccgtacgggtgagaaagcagctaccagcaccaagaccaacatgcacatt
ctggtcaataccgggttgaggttgttgcatatgagcttgaagagatcgaaggtgaattct
tcagaagaacacattttgggaatgcttgacccatttgtgcagctattgattgactgcctc
cagtccatgcatgtaaaggtgatcatttctgccttgcagtgcctcacctggatattgaaa
ttcccattggcgtccatggaaaccctggctgatcagctgacccagcaactttttgtgtta
ctgaaggattatgcgagggctggagcagggaggggagacaacttccacctggtggtgaat
tgtttcaagtcaattactatcctcgtgaggaacatgacaggacacatgataactggcaaa
cagttgcagattctgttgggatatgctgaggaagatatttatgactcatcacgtcaggca
acagcatttggtcttctgaaagcaattctctcaagaaagctgcttgttccagagatggac
gaagtgatgcagaaagtggccaaacttgctgtgactggacagagtgaccaggtccgagtg
cagtgtcgtcaggtttatttgaagtttgttctggattatcccctgggaagtaaactgaag
tctcaccttgagttcattgtggcacagctttcctatgaacatgatattggaagagaatct
gcattggaaatgctagcttatatctttcaatcctttccacagggtctgcttcatcagtat
tatgcccttttcttcatccctgtcactctgatgattgtgaatgatgattcaccgagctgc
aagaagatggcagctctggtagctcagtcgttgttgagcaaggtggacgagaagcacaag
gacctgatgttttcgttggtcttgacgtggttccaaagtgaaaagatctctcaccgtcga
ctggctgcccatacttgtgggctttttgttgaaactgaaggaaccacctttgagaaacga
cttgggatcgttcttccaatccttgaagccgcaattgatcctggaaatttccaagatatc
catgaggaagcggaagagaaagccacagaccgtttgctgttcaacctcttgactctgact
gtgaaactggtgaagaattgcaacttggtccagctgctcaaaccacaccccattctcacc
acgatctggggtcacatccaagctcatctgtggcaccctcactcctgggtttggctcacc
tctgcccagctgttcggaatgctgttcgcctcctatcaacctgaagagctggtggccaag
tggaactctggcaaggcactgatcacggaacagaattccatggagacgccagcggcacag
ttcttgctggaagagctggacagaaagaccaaactcttggctttagccttttgtcatcag
ctgcagtccaagttcctggatctcacgctgggtgaacaggtgataaagaacttgctgttt
gtggccaaagtcatcttcctcttggagtctgttgactgtggagatgaaaaggtggatgaa
aagacagaggagagcgaggatgaaatgggagcagacgaaactgaggaagacacggcagga
aaagttgcgtctgatggtgccaaagggaagagagcaaccctgatgtggctgatcaggaag
ctgtgtactcttgccaagagagaagcagctcattccccgaaaatatctttgaagaggaca
tgcgtctttaagttccttggagcaatctccgtaaaccttggaatggaaggagtgaagcct
tatctcccagtaattattgcgcctctttacagggaattgaacagtacttacgcagagcaa
gactcgacattgaggaacctttcccaggagatcatcgagctgctgaagaaactggttggg
ttggaaacgttctctctgggctttgcagccgtgcagaagcaggccagccagaagaaagct
ttgcggaaaagacagaaagctctgcaggcagtggcaaatccggatattgccgcaaggaag
aaactgaagaagcacaaaaataaagcggaagccaagaaaagaaaaattgaagtccttcga
cctggctacaaggcgaaaaaggcccgaagcagcacgctaaaggacttggccatagtggag
tga
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integrated database retrieval system
