Chiloscyllium plagiosum (whitespotted bambooshark): 122560220
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Entry
122560220 CDS
T08871
Symbol
taf4a
Name
(RefSeq) transcription initiation factor TFIID subunit 4 isoform X1
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Pathway
cpla03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
122560220 (taf4a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpla03021
]
122560220 (taf4a)
03036 Chromosome and associated proteins [BR:
cpla03036
]
122560220 (taf4a)
Transcription machinery [BR:
cpla03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
122560220 (taf4a)
Coactivators
SAGA/TFTC/STAGA complex
122560220 (taf4a)
Chromosome and associated proteins [BR:
cpla03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
122560220 (taf4a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
tRNA-synt_1c
Motif
Other DBs
NCBI-GeneID:
122560220
NCBI-ProteinID:
XP_043566588
LinkDB
All DBs
Position
20:44184219..44289556
Genome browser
AA seq
1114 aa
AA seq
DB search
MAAGASDLLDDVFFSDVDEKVVSDLVGSLESQLAATGHNAAEQPGIRAQVVNNHVENTPG
MVSNNVELQTAENKMGLAGAEVSTAAKIKVDESSEGKNAQINSQNAFGSGVLPCTTAGSG
AQQSVVINNARSQAPGVEQEQSTAAVAAVTGSSETSASGSIGQGKSVVISAMATPVSNHV
KTVTSNVQTLNGNNGMAINSHNAGNATSFTCSAAATTLPAVTVVNNGPGSVVKNTINTGL
PAVSLPVSSSAYTVIQTSFVSTQNVPSTVVSSQTAGPTVTLVRPPAHSGPVLSVASTPNG
SSTILNSTVSVTNLPAPSGTGTPHQTSLLTLNSQTSSLSSNTSLSAGGQVIKSDLQPKTI
IQTPQQTLGAGILTSTTGSAATTINNQSNTSTMVIGQTIQSGLQNVASNPGGISTQSVGT
PVGMGKGTINTVAQTMARTAAVNTGPRTTITPQVIAPRLPQPQQHQPNIQNIQIPPGMVL
VRSDSGQLMLIPQQALQQMQSQAQSQGALTSRSATPTSGPPVQISTVQAPGTQIIARQVT
PTIIKPVSQPQTTVQVTTALQRPPTVQSQIVISGSTSAASIGTATTVQPGTPQRSVQTLA
AAAGGPSSQILQPTASAETMENVKKCKNFLSTLIKLASSGKQSTETAANVKELVQNLLDG
KIEAEDFTSRLYRELNSSPQPYLVPFLKRSLPALRQLTQDSQAFIQQSQQQSSTQTTTAL
TAVVLGNTVQQRPVVRTTTATATVTSTLQHPVLSLTQPGQSVQTGKVVQQQQGTIVRPQV
TLTQTPMVTLRQPQNRIMLTGSSQVQLKQLQTVPVMKQTVVPGTKAGLTYSVQTSVVQKN
KLKEAAAAAAAASGSFRDDDDINDVASMAGVNLSEESARILATNSELVGTLTRSCKDEAF
LFAAPLHRRMLEIGKKHGITDVHPDVVNFVSHATQQRLQTLVEKISEVAQQRNISYKEDD
RYEQLNDVKSQLKFFEQLDQIEKQRKDEQEREILMRAAKSRSRQEDPEQLRLKQKAKEMQ
QQELAQMRQREANLTALAAIGPRKKRKVDSPGPGIGAGTEGPSTGGTPGASGVGTPRQFT
RQRITRVNLRDLIFCLENERETSHSLMLYRAFLK
NT seq
3345 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgggggcttcagatctgttggacgatgtgttcttctcagacgtggatgagaaa
gtggtgagcgacttagtcggctccctggagtcccagttggcggctacgggccataacgcg
gcggaacagcccggaataagggcgcaggtggtaaataatcacgtggaaaacacacccggg
atggtgagcaataatgttgagctgcaaacagcagagaacaaaatgggactggcaggagct
gaggtttccaccgcagccaaaatcaaagtggacgagagctccgaggggaaaaacgcacag
attaattcgcagaacgcatttggcagtggggttttgccatgtacaacggccgggagtgga
gcacagcaaagtgttgttatcaataatgcaaggtcccaggctccaggagtggaacaggag
cagagtacagcggcggtagcggcagtgacaggatcatcagaaacatcagcttcaggcagc
atcggtcaaggaaaatcggtggtaataagtgcaatggcaaccccagtgtccaaccatgtg
aaaactgtcacctccaacgtacaaactcttaatgggaataatggaatggcgataaactct
cacaatgcaggaaatgccaccagtttcacttgttcagcagcagcaactaccttgccagct
gttacagtggtcaataatggacctggatctgttgtaaaaaacacaattaatacagggttg
ccagcggtgtctttgcctgtctctagttctgcctacactgttattcagacgtcttttgtc
agcacgcagaatgttccttcaactgttgtttcttcacagacagcaggacccacagtgaca
ctggtgagaccaccagctcacagtggcccagttctgtcagttgcatcgacgccgaatggt
agtagtactatattgaactcaacagttagtgtaactaacttgccagctcctagtggcact
ggaactccccatcagacttcacttctgactttaaacagtcaaacttctagtttgtcaagc
aacacttctttgtctgctggtggacaagttatcaaatctgatttacagcccaaaacaatt
atacagacaccacaacagactctcggtgcaggaatattgacatcaacaactggtagtgcg
gcgaccactataaacaatcaatcaaatacaagtactatggtaataggtcagacgatacaa
agtgggcttcagaatgtggcatccaatcctggtggaatttccactcagtcagttggtaca
ccagttggaatgggcaaaggaaccattaacacagttgcccaaactatggcaaggacagca
gcagtgaacactggcccaaggacaacaataacaccacaagttatagctccccgtctccct
caaccccaacagcatcaaccaaacattcaaaatattcaaattcccccaggaatggttctt
gtgcgaagtgacagtggacagttgatgctgattcctcagcaagctctacaacagatgcag
tcacaagctcagtctcaaggggcactcacttcaagatcagctacacctaccagtggtcct
ccagttcagatctcaacagtacaggcacctggaacccaaataattgcacgacaagtgaca
cctacgatcatcaaaccggtttctcagccacagactacagtacaagtaacaactgcattg
cagcgacctccaactgtacagtctcagattgtaataagtgggtcaacatctgcagcttca
atagggacagcaacaacagtccaaccaggaacacctcagagatctgtacaaacattagca
gctgctgctgggggtccttcatcacagatactgcaacccactgcctcagcggaaaccatg
gaaaatgtgaagaagtgtaagaactttctatctacgctgatcaaactagcttcaagtggt
aaacagtcaacagaaacagctgccaatgttaaagaactggtgcagaacttgttggatgga
aaaattgaagcagaagatttcactagccggttatacagggagctcaactcctcgcctcaa
ccttatctcgtgcctttcctgaagcggagtttgccagccttgcgccaactcacccaagac
tcgcaagcttttattcagcaaagtcaacagcaatcctcaactcagactacaacagcattg
acagcagtggtgctgggaaatactgttcaacaacgacctgtagtaagaacaactactgct
acagctacagtaactagcactctccaacatcctgtgctaagtttaacacaacctggacag
tcagtgcaaactggcaaggttgttcaacagcagcagggaacaatcgtcaggccgcaggta
acactgactcaaacacctatggtgacacttcggcaacctcagaaccgtatcatgctgact
ggttcttcacaggtgcaattgaagcaacttcaaacagttcctgttatgaaacagacagtg
gtgccaggaactaaagctggtttgacttactctgtccagacttctgtcgttcaaaaaaat
aaactaaaagaagctgctgctgctgctgctgctgcaagtggctctttcagggatgatgat
gatattaatgatgtggcatctatggctggagttaacctttcagaagaaagtgcacgcatt
ttggcaacaaattcagaactggtggggactctgacaagatcgtgtaaagatgaggcattc
ctgtttgctgcaccgttgcacagaagaatgttagaaataggtaaaaaacatggaattact
gacgttcatcctgatgtagtaaattttgtatcacatgccacccaacaacgattacaaaca
cttgtagaaaagatatctgaagttgcacaacagagaaacatctcatacaaggaggacgac
aggtatgagcagttaaatgatgtaaagtcacagctcaagttctttgaacaactagatcaa
atagaaaagcagagaaaagatgaacaagaaagagaaattttaatgcgagcagcaaagtct
cgctccagacaagaggacccagagcaacttaggctaaaacaaaaggccaaagagatgcaa
caacaggaattggctcagatgaggcagagggaagccaatttaactgcattagcagcaatt
ggccccagaaagaagcggaaggttgattcaccaggacccggcattggagctgggacagag
ggacccagtacgggcgggacaccaggagcctctggagttggaacacctagacagttcaca
cggcaacgaataacaagagtcaacctcagggaccttatcttctgcttggagaatgagcgt
gagacaagccattcactaatgctgtaccgtgcattccttaaataa
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