Chiloscyllium plagiosum (whitespotted bambooshark): 122560548
Help
Entry
122560548 CDS
T08871
Symbol
cpsf4
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 4 isoform X1
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Pathway
cpla03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122560548 (cpsf4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpla03021
]
122560548 (cpsf4)
03019 Messenger RNA biogenesis [BR:
cpla03019
]
122560548 (cpsf4)
Transcription machinery [BR:
cpla03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
122560548 (cpsf4)
Messenger RNA biogenesis [BR:
cpla03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
122560548 (cpsf4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-CCCH
zf_CCCH_4
zf-CCCH_3
Torus
zf-CCCH_2
zf-CCCH_12
zf-CCHC
zf-CCCH_4
zf-CCCH_RBM22
zf-CCCH_DUS3L
zf-C3H1
Nab2-like_zf-CCCH_
Motif
Other DBs
NCBI-GeneID:
122560548
NCBI-ProteinID:
XP_043567222
LinkDB
All DBs
Position
21:complement(14013422..14035179)
Genome browser
AA seq
272 aa
AA seq
DB search
MQELISNVEHIRFELEIAVEQQLGAQPLPFPGMDKSGAAVCEFFLRASCGKGGMCPFRHI
SGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESK
IKDCPWYDRGFCKHGPLCRHRHTRRVICVNYLVGFCPEGPSCKFMHPRFELPMGTGVDQP
PLQQQQQILQKQSLTPFLQRSSSLVQIPSTNIIVGQQKSNTQSSGSVQQSQFQTLSNRGP
RPLEQVTCYKCGEKGHYANRCTKGHLAFLSGQ
NT seq
819 nt
NT seq
+upstream
nt +downstream
nt
atgcaggagctcatttccaatgtggagcacatcaggttcgagctggagatcgcggtggag
cagcagctgggggcccagccgctcccgttccccggaatggacaaatctggggcagcggtc
tgtgaattctttctgagagcatcatgtggaaagggtgggatgtgcccttttcgtcacatc
agcggtgagaagacagtggtgtgcaaacactggctgaggggcctctgcaagaaaggagat
cagtgtgaattcttacacgagtatgacatgaccaagatgcctgagtgctatttctattcc
aaatttggagaatgtagtaataaggaatgtccatttctacacattgaccctgagtccaaa
atcaaagactgcccctggtatgaccgaggattttgtaaacatggtcccctgtgcaggcac
cgacacacacggcgagtcatctgtgttaactatctggtaggattctgtcccgaaggcccc
agctgtaaatttatgcatcctcgttttgagctgccaatgggtactggtgttgaccaacca
ccgttgcagcaacagcaacagatacttcaaaagcagagtcttactccgtttcttcagcgg
tcatcctcactggtacagattcctagcaccaacataattgtagggcagcagaagtcaaac
acgcaatcaagtggatcagtgcaacaatctcaatttcagacattgtcgaatcgaggccct
agaccattagagcaagtcacgtgttataagtgtggtgagaaaggacattatgccaatcga
tgtaccaaaggacacttggcatttcttagcggtcagtag
DBGET
integrated database retrieval system
