Chiloscyllium plagiosum (whitespotted bambooshark): 122560589
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Entry
122560589 CDS
T08871
Symbol
pms2
Name
(RefSeq) mismatch repair endonuclease PMS2 isoform X1
KO
K10858
DNA mismatch repair protein PMS2
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Pathway
cpla03430
Mismatch repair
cpla03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
122560589 (pms2)
03460 Fanconi anemia pathway
122560589 (pms2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cpla03400
]
122560589 (pms2)
DNA repair and recombination proteins [BR:
cpla03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
122560589 (pms2)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutL_C
DNA_mis_repair
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
122560589
NCBI-ProteinID:
XP_043567308
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Position
21:complement(19456416..19493814)
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AA seq
894 aa
AA seq
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MGSNFEFSKLYLNCSNQCLALSIWHLFVLCCKQSSAPARVIKQIDRQSVHQICSGQVVLS
LSTAVKELVENSLDAGATNIDIRLKEFGANLIEVSDNGDGVEEKNFEGLTLKHYTSKLQD
FSDLLHVETFGFRGEALSSLCALSDLSIVTCHKNAKVGTRLVFDHNGQISEKVPYPRQQG
TTVTVQQLFCTLPVRHKEFQRNIKKEYSKMAQVLQAYCIISAGIRINCTNQVGQGKRNPV
FCTSGCTTLKENISALFGSKQLQNVIPFVQQSPSEAICEDYGINSTDIPVKLYRITGFVS
RSDHGVGRSSTDRQFFFINQRPCDPLKVSKLVNEVYHMYNKHQYPFVALNICVNSESVDL
NVTPDKRQILLQEEKLLLAILKTSLIQIYDSNVNKLEVNEKFPQKPGISEKVPMAVSPKS
SVPLKQQSPTQSYSDKEKYVGVARLREAYSLHRSSLCVPKSNKQQDFPVQRKLHNFFTSC
KLSSPQPDCRTDHMPVSGNPKQMEQNSMDSESGTDSAKGCTIQPSECDYNTLKTNAMSKS
TGGSDNAVSLSNMLQKFSEAGKGEKELKTEMIGCEVLVPNISELTEKSDSAENCSRLLAD
SCSHGYVIQGEKRMKVSGSCLDDSLPSEPGLFQTSEIDIPVEMNKKIAILPFSMALLALR
MKLVHEQQALQKEAQRCRRFRAQIRPGDNQAAEAELRKEISKDMFASMEIIGQFNLGFII
TKVDSDLFIVDQHATDEKYNFEMLQQHTVLQSQKLIVPQNLHLTAVNETVLMENLDIFRK
NGFDFMINEEAAPTDRVKLVSLPMSKNWTFGPQDIDELIFMLSDMPGVMCRPSRVRQMFA
SRACRKSVMIGTALHISEMKKLVTHMGEIEHPWNCPHGRPTMRHLANLDMISVE
NT seq
2685 nt
NT seq
+upstream
nt +downstream
nt
atgggatccaattttgaattctccaaactctatctcaactgttcaaaccaatgtttggct
ctgtctatctggcatctttttgttctctgctgcaaacagagctcagcgcctgcaagagtc
atcaagcaaattgaccgacagtcagttcaccagatttgttcagggcaagttgtgttaagc
cttagcactgctgtaaaagagttggtggaaaacagtctggatgctggagctactaatatt
gatatcagattgaaagaatttggagcaaatttgattgaagtatcagacaatggggatgga
gtggaagagaaaaactttgaagggctgacactgaagcattacacttccaagttgcaagat
ttctccgacctcttacacgtggagaccttcggatttagaggtgaagctttgagctccttg
tgtgctctaagtgaccttagtatcgtgacatgtcacaaaaatgccaaggttggaactcgc
cttgtttttgaccataatgggcaaatcagtgaaaaggtgccatatcctcgacagcaaggg
acaacagttacggttcagcagttgttttgcacattaccagtcaggcataaagaatttcag
cgaaatattaaaaaggaatacagtaaaatggcacaggtgctgcaggcctattgcataatt
tctgctggcatacggataaattgtacgaatcaggttggacaaggaaaaaggaaccctgtt
ttttgtaccagtggatgcaccactttgaaggaaaacatcagtgcattatttggatcaaaa
cagttacagaatgttattccttttgttcaacaaagcccaagtgaggcaatttgtgaagat
tatggaattaattctactgacattcctgtaaagctctacagaatcacagggttcgtgtct
cgtagtgatcatggtgttgggagaagttcaactgatcgacagtttttctttatcaatcag
cgaccatgtgacccattgaaggtttccaaacttgtaaatgaagtctatcacatgtacaac
aagcatcagtatccatttgttgcccttaatatctgtgttaattctgagtctgttgacctc
aatgttacaccagacaaaagacaaattcttcttcaggaggaaaagctgcttcttgcaatc
ctgaagacatcccttattcagatatatgattctaatgttaacaagctcgaagttaatgag
aagtttccacagaagccaggaatctctgaaaaagttcctatggctgtcagtccgaagtca
tctgttccacttaagcagcaatcacccacgcaatcgtattcagataaagagaagtatgtg
ggcgttgccaggttgcgtgaagcatactccctacacaggtcatcattatgtgtgcccaag
tctaataaacaacaggactttccagtgcaaagaaaactgcacaatttttttaccagttgt
aaactgagtagccctcagcctgattgtaggactgaccacatgccagtatctggaaatccc
aaacaaatggagcagaactccatggactctgaaagtggtacagattctgcaaaaggttgc
actatacaaccatcagaatgtgattacaacacactaaagactaacgctatgtcgaaatcc
actggtggctctgacaatgctgttagcttgtcgaacatgctccaaaagttttcagaagct
gggaaaggggagaaagaactgaaaactgaaatgattggctgtgaagttttggtgcctaac
attagtgagctaacagagaagtcagattcagcggaaaattgcagccgactattggcagat
tcttgttcacatggttatgtcatccagggtgaaaaacgcatgaaggttagcggctcgtgt
ttggatgatagcttgccttcagaacctggattatttcagacttcagagattgatatacca
gtagaaatgaataaaaagattgcgatactccctttctctatggcccttcttgctttaagg
atgaagttagtccatgaacagcaagcacttcaaaaagaggcccagagatgcaggcgattt
cgagcccaaattagacctggagacaatcaagcagcagaggctgaactcagaaaagagata
agcaaagacatgtttgccagcatggaaattattggtcagttcaatttgggatttatcatc
actaaagtggattcagacctgttcattgtggaccagcatgccactgatgagaagtacaac
tttgaaatgttgcagcagcacacagttcttcaaagtcaaaagcttatagtaccccagaat
cttcatttaactgcagtgaatgaaactgtactgatggaaaacctggacatattcagaaag
aatgggtttgattttatgataaacgaggaagctgcacccactgatagagtaaagctggtt
tccttgccaatgagcaagaactggacatttggtcctcaggatatcgatgagctgattttc
atgctgagtgacatgcctggggtgatgtgtcgaccatccagagtcaggcagatgtttgct
tccagggcttgtagaaagtcggtaatgattgggactgcgcttcatatcagtgagatgaag
aaattggttacacacatgggtgaaatagagcatccctggaactgcccacatgggcggccg
accatgagacatctagcaaatttagacatgatatcggtggaatga
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