Chiloscyllium plagiosum (whitespotted bambooshark): 122561009
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Entry
122561009 CDS
T08871
Symbol
herc4
Name
(RefSeq) probable E3 ubiquitin-protein ligase HERC4 isoform X1
KO
K10615
E3 ubiquitin-protein ligase HERC4 [EC:
2.3.2.26
]
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Pathway
cpla04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
122561009 (herc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cpla04121
]
122561009 (herc4)
Enzymes [BR:
cpla01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
122561009 (herc4)
Ubiquitin system [BR:
cpla04121
]
Ubiquitin ligases (E3)
HECT type E3
122561009 (herc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RCC1
HECT
RCC1_2
Hikeshi-like_C
T7-like_gp12
Motif
Other DBs
NCBI-GeneID:
122561009
NCBI-ProteinID:
XP_043568209
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All DBs
Position
22:complement(1150147..1252454)
Genome browser
AA seq
1049 aa
AA seq
DB search
MLCWGNTSYGQLGLGGIDEEVVLEPRICEFFQSRKIRDLGCGRRHTVFVLDDGTVYSCGC
NDLGQLGHEKARKRPEQVGALDAQNITAVSCGEMHTLALNDSGQVFAWGLAKDGQLGLAI
TEESVRVPRNIKSLVEVQITQVACGYHHSLALSKGSQVFSWGQNKNGQLGLGQDIGNQPS
PQPVRSLNGVPFVQIAAGGAHSFAVSLSGAVFGWGCNKFGQLGLNDEHDRYVPALLKSLR
TQKIVYVCCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTNHEINPRKVFELMGYVITQIA
CGRQHTLAFVTSSGKVYSFGLGGNGQLGNGSTSNRKSPCAVKGAWVPHGGQFLPIINAKN
NYYVKRIFSGGDQSFAHCYSLQNSMPPDDFRLPNPSKVILTLNDAIIQKWINYPPGRIPS
EVTNEIDTVFSSAGCLNGSFLALSNDDHYKTSSKFSGIDMNAARLLFHRLVHSDHPRISQ
QIAASMEKNLIPRLSHSPPDVEALRIYVTLPECPPMNDVNNYVTLAIPFGMAIIKLEKVP
LKVLENWWATFEPAFFQKIVQLYKDVVVFLLRLTKVGMANSERRTWNNFLKTALEVLAIL
HRVNEKSGQIIQYDKFYIHEVQDLIDIRNDYVNWIQHQVYGVMPDMPITICTYPFVFDAQ
AKTTLLQTDAILQMQLAVDQAHRQNFSSFFMPVVDTVNPCLVLIVRREHIVEDTVEVLRK
SKNVDFKKPLKVIFVGEEAVDAGGVRKEFFLLIMRDLLDPKYGMFRYYEESRLIWFSFQT
FEEIDLFHLIGVVCGLAIYNFTIVDLHFPLALYKKLLNQKPTLDDLKELMPIVGRSMQQL
LDYPEEAVEDIFSLNFTIAVEKFDVTEVKELVPDGANIPVTKYNRQEFVDAYVDYVFNKS
IAPLFDGFYEGFHKVCGGKVLQLFQPNELQAMVIGNANYDWKEWEKNTEYKGEYWAEHPT
IKLFWEVFHELPLEKKKRFLLFLTGSDRIPIIGMKSLKFIIQPTGGGDEYLPVAHTCFNL
LDLPKYTDKETLRTKLVKAIDHYEGFSLV
NT seq
3150 nt
NT seq
+upstream
nt +downstream
nt
atgctatgttggggaaatacatcatatggacagcttggacttggtggtatcgatgaggag
gttgttttagaaccaagaatctgtgagtttttccaaagcagaaagattcgtgatttggga
tgtggccgcagacatacagtttttgttcttgatgatgggactgtttacagctgtggatgt
aatgatctgggccagctgggacatgagaaagcaagaaagagaccagagcaagttggggca
ctggatgctcagaatatcactgccgtttcatgtggagagatgcatactcttgcactaaat
gatagtggtcaagtgtttgcttggggtcttgccaaagatggtcagttgggtttggctatc
acagaagaaagtgtccgggttcccaggaatataaaatccttagtagaagtacagataaca
caggtggcctgtggttatcatcattcccttgcattgtcaaaaggaagtcaagttttctca
tggggacaaaataagaatgggcaactgggattaggtcaagatattggaaaccagccatca
ccgcaacctgttagatctttaaatggtgttccttttgttcagattgcagcaggtggagcg
cacagttttgcagtctcactctcaggggctgtgtttggttggggatgcaacaaatttggc
cagcttggcttgaatgatgagcatgacagatatgttcctgctctgttgaaatctcttcga
acacagaagattgtctatgtttgctgtggtgaagatcatactgctgctcttacaaaggaa
ggtggagtatttacatttggtgctggaggctatggccaattggggcataacagcacaaat
catgaaataaatccaagaaaagtctttgaattgatgggatatgtaataacacagattgca
tgtggaaggcagcacacactagcatttgttacctcatctggaaaggtgtattcatttggt
cttggaggaaatggccaactgggaaatgggtctacaagtaacagaaaaagcccctgtgcg
gtgaaaggagcatgggttcctcatggtggacaatttttaccaattatcaatgccaaaaac
aattattatgttaaaagaattttctctggaggtgatcaaagtttcgcacattgttacagt
ttgcagaattccatgccaccagatgacttcagattacccaatccatcaaaagttatactc
acattaaatgatgcaattatccagaagtggataaattatcctcctggaaggattccttca
gaggtaacaaatgaaatcgatacggtgttctcatcagcaggctgcttaaatggaagcttt
cttgctttgagtaatgatgatcattataaaaccagttccaaattctctgggattgatatg
aatgcagctagactattatttcacagactcgtacattctgaccatcctcggatttcgcag
cagatagcggctagtatggaaaaaaatttgatcccaagactttctcattccccacctgat
gtagaggccttgaggatctatgttactcttccagagtgcccacctatgaatgatgtcaac
aactacgttacattagccattccatttggaatggctataattaagcttgaaaaagtgcca
ctgaaagtacttgaaaattggtgggccacatttgaacctgcgttctttcagaagattgtg
caactttataaggatgttgtagtatttcttctgagattaaccaaggttggaatggctaac
tctgaacgaaggacatggaataactttctgaaaaccgccctggaagtattggcaattctc
catagggtaaatgagaaatcgggacagatcattcagtatgataaattctatatccatgaa
gtgcaagatctgatagacatcaggaatgattatgtaaactggattcaacaccaagtatac
ggggttatgccagatatgccaattacaatttgtacttatccatttgtatttgatgctcaa
gcaaaaacaacactcttacagactgatgccatcttacaaatgcagttggcagttgaccag
gcacatagacaaaatttttcatcctttttcatgcctgtggtggatacagttaacccttgc
ctcgtgctgattgtacgaagggaacacattgttgaagacactgtggaagtattgaggaaa
agcaaaaatgtagatttcaagaagccattgaaggtaatttttgttggagaagaagctgtg
gatgctggaggtgttcggaaagagtttttcctcttgattatgagagatttattagatcct
aagtatggcatgtttcgatattacgaggaatctagactcatttggttttcatttcagact
tttgaagaaattgatttatttcatctgattggtgttgtttgcggtcttgcaatctacaac
ttcacaatagttgaccttcattttccactggccttgtataaaaaactgctaaaccagaaa
cctaccctcgatgacctgaaggaattgatgccgattgttggcaggagtatgcagcaattg
ttagattatccagaggaggctgtggaagacatcttctccctcaactttacgattgcagta
gaaaaatttgatgtaactgaagttaaagagttggttccagatggtgccaatattcctgtc
actaaatataacagacaggaatttgtggatgcatatgtggactatgtgttcaacaagtcg
attgctcctttatttgacggtttctatgaaggttttcacaaagtgtgtggtggaaaggta
cttcagctcttccagcctaatgaattacaggcgatggtgattggaaatgcaaattatgat
tggaaggaatgggaaaagaatactgaatataaaggagaatactgggcagagcatcctacc
atcaaattattctgggaggtattccatgaactgcctttggaaaagaagaagcgttttctg
ttgtttctaactggcagtgatcgtatcccaattattgggatgaagagcctaaaatttatc
attcagccaactggaggtggggatgagtatcttccagttgcacatacctgctttaatctt
ttggatctaccaaaatacactgacaaagaaacccttaggaccaagctagttaaagccata
gatcactatgaaggcttcagtttggtgtaa
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