Chiloscyllium plagiosum (whitespotted bambooshark): 122561104
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Entry
122561104 CDS
T08871
Symbol
vps13a
Name
(RefSeq) vacuolar protein sorting-associated protein 13A isoform X1
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cpla04131
]
122561104 (vps13a)
Membrane trafficking [BR:
cpla04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
122561104 (vps13a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS13_N
VPS13_M
VPS13_VAB
VPS13_C
RRM_fung
TAF1C_beta-prop
Motif
Other DBs
NCBI-GeneID:
122561104
NCBI-ProteinID:
XP_043568456
LinkDB
All DBs
Position
2:77665302..78087021
Genome browser
AA seq
3192 aa
AA seq
DB search
MVFESLVVEVLNRFLGDYVVNLDTSQLQLGIWGGDVVLNNLEIKENALCELNVPFKVKAG
HIGKLELKIPWKNLYGQAVEATLDGIYVLIVPCASIQYDAEKEELQLQEIKQRELQRIEE
AKQKVADKENPKEGKQDTFIEKLITQVIKNLQVKITNVHIRYEDDITNPNSPLSFGISLQ
NLSLETTDERWNPCLHDQCEHTFNKLVRLDYLCAYWNVSTKMYSKSHQIQALKDLKNGVS
TSNFIPETYQFIFQPLSAQAKLEMNPRAEVDFASPKMNFQVNIQDIAIEIKRPQYLSIME
LLGSIDMMTRNLPYRKYRPGVPCRNNAKKWWAYAINGILEEKIKPALNAWSWRHIRKHRQ
TLRNYRSLYKSRIKTKKPDEELLSALEELEKDLDLFNITLARQQAEVEVMKTGHKIYRPG
AKIEDEKTGGWFDWVWNWAGTKEEKPQESKSGIDLLMTPEEKAKLYAAIGYSEAVVDPTM
PKRYEAVKLSVKLVSMSVSIREEEDQPEIMKFAVIDLSMMMIQRPGAQAIKFEAMVSTLE
VTGLPQNTDKPLLLSSRSALTENEDILLRIMFETNPLDERADQRLKVESCPLEIVYDART
VNGLVDFFRPPTDVQLVEITSATMMKLEEFRDKTATGLMYIIETQKILDLKVNLMASYVI
IPQNGFFDKSASLLVLDLGNFKMMSKNRARLPQITAGESTLEDIMARAYDCFDIQLSSVQ
LLYAKPHEDWKTARKRKVSSQHILRPMDLKLELCRAMVASDPRMPKFKVYGGLALLSVCI
SDQKLKRVLELIDSIPKPKSNTPSPSIKSHQPQKISPNMTPRSVQKRAVQKDLYSSVLSM
ADSDDEFYDAPSSPVDETPFLPAKAVSLQRSESIRKKQLRKQESMKNMTDFQLQFEITKI
SLGIYRYVEDTEIPVLELEIVGLGTELKIRTYDMTSHTFLKEISLKCPEQTDAKDKPIYI
ITTLDNDEDDLLTIEYIKANKDGPEFKTTYRNTEQLIKVNFSSLDVYLHSEALLSSIHFL
MNLIPQSETKVSSDEQAPEIEEKKDELLTKKKTSPRSGRLEDLIKLHLCAELALLKIFVC
DPTRRIAEISIVGLDAEVALRKNLSEVTAKLKNIVVLDSSEDAIYKKAVSIAGKEVFNFK
IISHVDATEGLAYSNMDVVDSCVQLTVGCIQVIFVKKFVSSVLAFFNIFQAAREAVTEAT
VQAASGVKDLAERSTRMQLDIHINAPVVVVPQSPVSKNVVVADFGFVIIQNSFSLVKQKG
STNLPPIIDSMKISLRELKLYRTIFENEAFRSEISLLQPVNLEVVVERNLSAAWYHEVPD
IKILGTLKPLHATLSQDDLIIILKSLNENLGDNSVEVVPVQAQRNSSSPSPSSAGRTVVT
AAVVETQKPFRVKTTLKLDFKLDELSLILYSQSLNPLNIVKEQRSEEDQLAEFKLHTLSS
SIKMLSDGSMNAAVKLFNCMLDDKRKAIQKATSRMIEMKLGVEKNAMMDLYYKQGREGMV
LDATIRDIHVCASMEFLLTVADFFVKANNQVSTAPVNKPAAMTSKEKVPPQAASKMELSV
HIQNPEIVFVADLTRVDAPSLVVTAQCEADINNDPELQQITATIKDLKIMACPFLKEKRK
DHVTTVLQPCSVFFQSAQATSGPSFLELAVKSLMLKVSPVIINTVITITSALNPTVDSPH
EKDSEIPPDLWNKKNVKDLKLWFLEKTKNNESKNGPTAQLESTEENLKMTVDFICLTLEA
GVGHRTVPMLLAKSTFKGDVKNWSTFINLHCHLNLEVHYYNEMLAVWEPLLEPLEIENSD
EFRPWELGIKIKKKAVKSMTQSEKEEENSPAYKTVIQISSKDQLNITMSKCGLTMLNNLA
MAFTEAAGQSSDVFQKDQAPFKVKNCLGLDASVYPSDSFIIIGKHQKIPYELKDGEFLSM
DYQRTNNEKERLSNLTNTSSKLFYISLTPEGHTRADKIPLTKLGRRMYTVLHEESTVERS
IVCQIDAVRGSKRITIRSPVQIKNHFSVPFNVFEDLESYQKILGTIHPNEEFNVPLLSYR
SDLRLQLIVEDEKIYTPCEAITFGHVSTSTEILFHRKCQFSRGGDQHTLMINIVAMHDML
ASDNPDEINNAYVLHLWPSAVLQNLLPYAVSVSLMEENKSRRLILDEGHSAQLHDAVLDQ
SKLTLTIIDYLEHNWAGEYLIKSNQTDIELIKFKSYIDGEETEIDIAILATYNVGHVMLS
LYSPYWMINKTGRLLQYKADDVHRKHPLDYKKPLLFSFGSKCFFEKNKVQLRITDSQLSD
SFSLDTVGSYGSIKCKGPKKEYQVGVKIDNSSFNLTRIVTFTPFHMLINRTKHKIEVTEE
CESKWLGIDSNQCSPFWPARDSERLAVRIEGCSAGPQKFYFNKQENCLLLRLDNKFGGII
AEVHLAEHSIVVTFKDYHEGAAPFLIINHTNASRIEYHQSSSTGKGHQLEPGKATYYTWE
DPTGSRMLSWYCGCEDTARVLSTIEDIFSEIPQENGKIYLASFFEGLQRIIVFTDDEGTF
RLTQENEKAEQAEQEIILSLQNLGISLINNSTKQEVVYIGITSSDVVWESKPKAKLRWKP
MSRKQTAQLEQVYKEYIESSPQESHIAELPCDFQALLTPNGMDMKLLQPSEVPIRRNYLP
AIKIEYTVSTHQKSLRVQIYKIQIQNQLSGAIFPFPFYPIIPPKSVTMDSAPKPFADVSI
ITRFAGKSDISRFRYFKVLIQEMDLKLDLGFLYAVMDLFTQSTDTVLAEQKLDLFKKDLE
YIQTELLTESAIDTTPVSLYEYFHISPIKLHLSFSISSGGEESNKQQEAELIPVQSLNLL
LKSIGATLTDVQDVVFKLAFFEIRYQFYTTQQLQWEVLRHYSKQAIKQLYVLVLGLDVLG
NPFGLIRDLSEGVEAFFYEPYQGAIQGPEEFMEGMALGVKALVGGAVGGIAGAASRITGA
MAKGVAAITMDEEYQQRRREAMNRQPSGIKEGITRGGKGLVSGFVSGITGIVTKPIKGAQ
KEGAAGFFKGIGKGLVGAVARPTGGIIDLASSTFQGIKRATETTEDVESLRPPRFIHEDG
VIRPYRLREGIGMQMLQKIENGRFAKYKYFGHKMINDSDLFMITKSGILFVTQGTFGQLN
CEWQYSFEEFTKEPFIVAGRRLRIEAKERVKSVFHAKEYGKIVNFKTEDDAQWILTKLQE
VRERGVRDHPKT
NT seq
9579 nt
NT seq
+upstream
nt +downstream
nt
atggtgttcgagtctttagtggtcgaggttttgaaccgtttcttgggggattatgtggtg
aacttggacacctcgcagttacagttaggaatttggggaggagatgtagttctcaataac
ctggaaataaaagaaaatgcgttgtgtgagcttaatgttccattcaaagttaaagctggt
catattggtaaacttgaactgaaaataccatggaagaatctatatggacaagcagtggaa
gctacattggatggaatctatgtgcttattgttccatgtgccagtatccaatatgatgct
gaaaaagaggaattgcagcttcaagaaataaaacagagagaattacaaagaattgaagaa
gctaagcaaaaggttgctgacaaagaaaatcccaaagaagggaagcaagataccttcatt
gaaaagttaattacgcaagttattaagaatttacaggttaaaattaccaatgtccatatc
cgctatgaagatgatatcactaatccaaactctccattgtcatttggaatttcacttcag
aacttgagtcttgagacaacagatgaaagatggaatccatgcttgcatgatcagtgtgaa
cataccttcaacaagcttgttcgattagactacctctgtgcatattggaatgtcagcacc
aaaatgtattcaaaaagccatcagattcaggctttgaaagacttaaaaaatggagtttca
acaagcaactttattccagagacttaccagttcatttttcagccattatctgcccaagct
aaacttgaaatgaatccacgggcagaagttgactttgcttcaccaaaaatgaacttccaa
gtaaacattcaagatatagcgatcgaaataaaaagacctcagtatcttagcatcatggaa
ctactcggatcaattgatatgatgacacgaaatctgccatatagaaaatatcggccaggt
gttccctgtcgcaacaatgctaagaaatggtgggcatatgctataaatggcatattggaa
gagaagataaagcctgcacttaatgcttggtcatggaggcacattcgaaagcacagacaa
acattaaggaattacaggagcctttataaatcaaggatcaaaactaagaaaccagatgag
gaacttctcagtgcacttgaggaacttgaaaaagaccttgatttgtttaacattacactt
gcaagacagcaagcagaagtagaggttatgaaaacagggcataaaatttacagaccgggt
gcaaaaattgaagatgagaaaactggtggatggtttgattgggtttggaattgggcagga
acaaaagaagagaaaccacaagaatccaaatctggaattgatttattgatgacgcctgaa
gaaaaagctaaactctatgcagcaattggatatagtgaagctgtggtggacccaacaatg
cctaaaagatatgaagcagtaaaactttccgtgaagcttgttagcatgtccgtttccatt
cgagaagaagaagaccagccagagatcatgaaatttgctgtgattgacttgagcatgatg
atgatccagagaccaggagcacaagcaataaaatttgaagcaatggtaagcacactggaa
gtgacaggactacctcagaacacagacaagccactgctgctttcttcaaggagtgctttg
acagaaaatgaagatattctgctcaggatcatgtttgagaccaatccattggatgaaaga
gctgatcagcggctgaaggtggagtcatgtccacttgaaattgtatatgatgcgagaact
gtgaatgggttggttgacttctttcgacctccaacagatgttcagctggtagaaataacg
tcagctactatgatgaagcttgaagaattccgcgacaaaactgcaactggtttaatgtat
attattgagacacagaaaatcctggacttaaaagtgaatctcatggcttcttacgtcatt
attccacagaatggtttttttgataaatctgccagcttattggttcttgatcttggtaat
tttaagatgatgagtaaaaatcgtgcgcgtctgccacaaattactgctggagaaagcacc
ttggaggatatcatggccagagcctatgattgttttgatatccagctgagtagtgttcaa
cttctctatgctaaaccacatgaggactggaaaacagctcgcaaacgaaaggtgtcatct
cagcatatattacgacccatggatttaaagctcgagttatgcagagcaatggttgcctct
gatccaagaatgccgaagtttaaagtttatggtggacttgctttactttcagtttgtatc
tcagaccaaaaactgaaacgagttttagagttgattgatagtattccgaaaccaaaaagt
aatacaccatcgccatccataaaatcccatcagccacagaaaatatcacctaatatgaca
ccacggtctgttcaaaaaagagctgtacaaaaggacttatactcttctgttctgagtatg
gcagattcagatgatgaattctatgatgctccaagctcacctgtggatgaaacaccattt
ctgccagccaaagctgtttcattgcaaagatcagaaagcatacgcaagaaacaattgaga
aagcaagaatctatgaaaaatatgactgacttccaactgcaatttgaaataacaaagata
tcactgggaatctatcgttatgtagaggatactgaaatccctgtattagaactggaaata
gtcggacttggcacagagcttaaaatcagaacatacgatatgacttcacacacatttctg
aaagaaatcagtttaaaatgccctgagcagacagatgctaaagacaaacccatttatatt
atcactactctggacaatgatgaagacgatctccttactattgaatatattaaggctaac
aaagatggaccagaattcaaaaccacctatagaaatactgagcaactcataaaggtgaac
ttttcatctttggatgtttatttacacagtgaagctctgctaagctccattcatttccta
atgaaccttatcccacaatcagaaaccaaggtcagttcagacgaacaggctcctgaaatt
gaggagaagaaagacgaactcctcacaaagaagaagacatctccgagaagtggaaggtta
gaagatctgatcaaacttcatttgtgtgcagaactggcacttctgaagattttcgtctgt
gatccaaccagaagaattgccgaaataagcattgtgggtcttgatgctgaggtggctttg
aggaagaatttatcagaagttacagcaaagctgaagaatattgtagttttggattccagt
gaagatgcaatatacaaaaaggctgtttccattgctggaaaagaggtcttcaacttcaaa
ataatctctcatgtagatgcgacagaaggtttagcctattctaatatggatgtagttgat
agttgtgttcaattgacagttggctgtatccaagtcatctttgtaaagaagtttgtgtca
tcagtattggcattcttcaacattttccaagctgccagagaagctgtcacagaggcaact
gtccaagcagcatctggcgtgaaggatcttgcagaacggagcactagaatgcaacttgac
attcacatcaatgcacctgttgttgttgtacctcaatctcctgtgtcaaaaaatgttgtt
gttgcagactttggttttgtcattattcagaacagtttctcactggtaaaacaaaaaggt
tccactaatctcccacctataattgactccatgaaaatttcgttacgtgaacttaaactg
tacaggacaatatttgagaatgaagcttttcggtctgaaatctctttgcttcaacctgtt
aatctggaagttgttgttgaacgcaatttgtctgctgcttggtaccatgaggttcctgat
attaaaattcttggaaccctaaaacctctgcatgctacgctcagccaagatgatctgatc
atcatattgaaatctctgaatgaaaatttgggtgataattctgttgaagttgtacctgta
caagctcagaggaatagttcaagtccttctccaagttctgcaggaagaactgtggtaacg
gcagctgttgtagaaacacaaaaacctttcagagttaaaacaacgctgaagttggatttt
aaattagatgaactttcattgatactgtacagtcagtccttgaacccgttgaacattgtt
aaagaacagagatctgaagaggaccaactagcagagttcaaattgcatacactttccagt
tcaatcaagatgctgtctgatggatccatgaatgctgctgtgaaactttttaactgtatg
ctggatgataaacgaaaggcgatacagaaagccacatcaagaatgatagaaatgaagcta
ggagttgaaaagaatgcaatgatggacctctactacaaacaaggaagagaaggaatggtt
ctagatgcaactatacgtgatattcatgtttgtgcaagtatggaatttctgctcacagtg
gctgacttttttgtcaaggcaaataatcaggtctctacagctccagtgaataaaccagct
gcgatgacgtcaaaagaaaaagtaccaccgcaagctgcgtccaaaatggagcttagtgtt
cacattcagaatccagagattgtctttgtggcagatttgaccagagtggatgccccatca
cttgtggtgactgcacagtgtgaagctgacattaataatgatccagaacttcaacagata
actgcaactattaaagatctcaaaattatggcctgcccattcctaaaagaaaagagaaaa
gatcatgttaccacggtcttacagccttgtagtgtatttttccaaagtgcacaagctaca
tctggtcccagtttcttggagttggcagtgaaatcactaatgctgaaagtatctcctgtt
attattaacactgtgattacaatcacatctgccttaaatcccactgttgatagtccacat
gaaaaggacagtgaaataccacctgacttgtggaataagaagaatgtgaaagacttaaaa
ctctggtttttggagaaaactaaaaataatgaaagtaagaatggcccaacagcacaatta
gaatcgacagaagagaacctaaaaatgacggtggacttcatttgcttgacgctcgaagca
ggtgttggacatagaactgttccaatgcttctggcaaagtcaacttttaaaggagatgtt
aaaaactggagcacattcattaatctgcattgccatcttaacttagaggtgcattactat
aatgaaatgcttgctgtgtgggaaccgctactagaaccattagaaattgaaaacagtgat
gaatttagaccttgggaacttgggattaagataaagaaaaaagctgtcaaatcaatgaca
cagagtgaaaaagaagaggaaaattctcctgcttacaaaacagttattcagatctcttca
aaagaccaacttaacattacaatgtcaaaatgtggtttgaccatgcttaacaatttggca
atggcatttactgaagctgctggccaatccagtgatgtttttcagaaagaccaggcacct
tttaaagtaaagaattgccttggacttgatgcgtcagtttatcccagtgattcatttatc
atcattggcaaacatcaaaaaataccttatgaacttaaagatggagaatttctcagcatg
gactaccaacgaacaaataacgaaaaggagcggctgtcaaacttgactaatacaagcagc
aaattgttttatatttcattgactcctgaaggccacactcgtgcagacaaaattccatta
actaagttaggccgtcgaatgtatactgttttgcatgaggaatcaaccgttgaacgatcc
attgtatgtcagattgatgcagtacgaggaagcaagagaataaccatccgttctcctgtt
cagattaagaaccatttttcagtacctttcaatgtatttgaagatttggagtcttatcag
aagatacttggtacaatacatccaaatgaagagttcaatgttcctttgctctcttataga
tcagatcttcgtttgcagctgatagtggaagacgagaaaatatatactccctgtgaagct
atcacatttggtcatgttagcacaagtactgaaatactatttcatcgcaagtgccagttt
tctagaggtggtgaccagcatacccttatgatcaatatagttgcaatgcatgacatgctg
gcatctgacaatcctgatgaaattaacaatgcatatgttctccatttgtggccgagtgct
gtacttcaaaaccttttgccttatgcagtcagtgtttccttaatggaggaaaataagagt
cggaggttgattctagatgaaggacattctgcccaacttcatgatgctgtactagaccaa
tccaaactgacactgactattattgactatttagaacataattgggcaggagaatacttg
atcaaaagcaatcagacagatattgaattaattaaatttaaatcatatattgatggtgaa
gaaactgaaatagatattgcaatccttgcaacatacaatgttggacatgtgatgctatca
ttgtatagtccctattggatgataaataaaactggacgactgcttcagtacaaagctgat
gatgttcatcgtaaacatcctttggactacaaaaagcctctccttttctcttttggatct
aaatgcttttttgaaaagaataaagttcagcttaggataactgacagccaattatcagat
tcattttctctggacacagtgggtagttatggctctattaaatgcaaaggaccaaaaaag
gagtatcaggttggtgtgaaaatagacaacagcagctttaatctaacaagaattgttacc
tttacaccatttcacatgctaatcaatcgaacgaagcacaagattgaagttactgaagaa
tgtgaatcaaagtggttgggcattgattcaaaccagtgcagcccattctggcctgccaga
gattctgagagattagcagttcgaattgaaggatgcagtgctgggccccaaaagttttac
ttcaacaaacaagaaaattgtcttttactgcgtctggacaataagtttggaggtatcata
gcagaagtacacttggcagaacattcgatagtggtgacttttaaggactatcatgaaggg
gctgctccattcctcattattaaccacacaaatgcaagcaggattgagtatcatcagagc
agttcaactggaaagggacatcaactagagccaggtaaggcaacctactatacctgggaa
gatccaacaggatcaagaatgctgagctggtactgtggatgtgaagatacagcaagagtg
ctgagtacaatcgaggatatattctcagagattcctcaagaaaatgggaagatttattta
gcatccttctttgagggtctgcagagaatcattgtgttcacggatgatgaaggaacattc
agacttactcaagaaaatgagaaagcagagcaagcagaacaggagatcattctgtcattg
cagaacttggggatttcactgattaataattcaacaaagcaagaagtggtctacattggt
ataacaagttctgatgttgtttgggaaagtaaacccaaggcgaaattgcgctggaaacca
atgagtagaaagcaaacagctcagctggagcaggtttacaaagaatatatagagtcttct
cctcaagagagccacattgctgaacttccatgtgattttcaggcacttttaactccaaat
ggcatggacatgaagctcttacaaccttctgaagtaccaataaggagaaattacctgcca
gctataaaaatagagtatactgtctcaactcatcagaaatctctccgagtccaaatttac
aagatccagatacaaaatcagctgtctggggccatctttccttttccgttttatccaatt
attccccccaaatcagtcaccatggattcagcaccaaagccttttgctgatgtcagtatt
atcactaggtttgcagggaagtctgatatatctcgttttaggtattttaaagtcctaatt
caagaaatggatctgaagttagatcttggttttctttatgctgtgatggacctattcact
caatcaacagatacagttcttgcagagcaaaagctggatctattcaaaaaggaccttgag
tatattcaaacagagctgttgactgaatctgccattgacaccacacctgtcagtctttat
gagtatttccatatttcacctatcaaactacatttgagcttctccattagttctggaggt
gaagaaagtaacaaacaacaagaagcagaactgatcccagtgcaatctctgaacctgttg
ctgaaaagcattggagcaactctcactgacgtacaagatgttgtcttcaagcttgcattt
tttgaaatccgttatcagttttatactacacaacaacttcagtgggaggtactccgacat
tactccaagcaggcaatcaagcaattgtatgtgcttgttcttggactagatgtcttaggc
aacccttttggtttaatcagagatctatcagaaggagttgaagcctttttctatgaacct
tatcagggagcaattcagggacctgaggagttcatggaaggaatggccttgggtgtaaag
gcattggtaggaggtgctgttggtggtattgcaggtgctgcttctagaataactggtgca
atggcaaaaggtgtagctgctataacaatggatgaagaataccagcaaaggcgtagggag
gccatgaacagacagccaagtggaattaaagaaggcattacacgtggaggaaaaggcttg
gtgtcgggatttgtgagtggaatcacaggaatagtgacaaaacctattaaaggtgcacag
aaagaaggtgcagctggtttcttcaaaggtattggcaagggcttggttggggctgttgca
agacccaccggaggcatcatagacctagccagcagcacttttcaagggatcaaaagagct
acagaaacaacagaagatgttgagagccttcgcccacctcgatttattcatgaagatgga
gtaattagaccatacaggttgagagagggaattggcatgcaaatgttacagaaaattgaa
aatggaagatttgccaaatacaagtactttgggcataagatgattaatgattcagacttg
tttatgattacaaaaagtggtatcttgtttgtaacacaaggaacatttgggcagctgaac
tgtgaatggcagtatagcttcgaggaattcacaaaagaaccttttattgttgctggaagg
aggttacgtattgaagccaaagaacgtgtgaaatctgtattccatgcaaaagaatatgga
aaaattgtgaatttcaaaactgaagatgatgcacagtggattctgacaaaattgcaagaa
gtgcgagaaagaggagtacgtgatcatccaaagacatga
DBGET
integrated database retrieval system
