Chiloscyllium plagiosum (whitespotted bambooshark): 122561215
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Entry
122561215 CDS
T08871
Symbol
trub1
Name
(RefSeq) probable tRNA pseudouridine synthase 1 isoform X1
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cpla03016
]
122561215 (trub1)
Enzymes [BR:
cpla01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
122561215 (trub1)
Transfer RNA biogenesis [BR:
cpla03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
122561215 (trub1)
Prokaryotic type
122561215 (trub1)
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Ortholog
Paralog
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
Phage_T4_Y05J
Motif
Other DBs
NCBI-GeneID:
122561215
NCBI-ProteinID:
XP_043568743
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Position
22:36973377..37058596
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AA seq
283 aa
AA seq
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MASSSGSVALAEKLQGLNGLFAIHKKKGPTSADVLNLLKTRLLKEAGIKQHPMKRKKQVL
KLGHGGTLDSAASGVLVVGIGKGTKMLSGMLSCSKKYTTIGEFGKATDTFDALGTVTEVQ
SYDHITKDDLESTLKKFRGNIMQTPPIYSALKQNGQRLSCLVKKGEAVEAKPARPVVVFS
LSVQDYNPPLFTLNVECGGGFYVRSLVNDLGKELSSCAHVKELIRTKQGPFTLDEHALQE
EKWTIVEIVKAVESGVQLIPSEVACKKLKIDSQDNSEQVKEAT
NT seq
852 nt
NT seq
+upstream
nt +downstream
nt
atggcgtctagctcggggtctgtcgctttggctgagaagctgcagggtctgaatgggctc
tttgctatccacaaaaagaaaggccctacttcagcagatgtactgaatcttctgaaaact
aggcttttaaaagaggctggcatcaagcaacatccaatgaaaagaaagaaacaggtttta
aagttgggacatggaggaactctcgacagtgcagcatcaggagtgcttgtggttggaatt
ggcaaagggaccaaaatgcttagtggaatgttgtcctgctccaagaaatatacaacaatt
ggggaatttggaaaggccacagacacgtttgatgctctagggacagtgacagaagtgcaa
tcatatgatcacataacaaaggatgatctggaaagtactctgaagaaatttagaggaaac
attatgcagactcctccaatatattctgctttgaagcaaaacgggcaacggctttcctgt
ttggtaaagaaaggagaagctgtggaagctaaacctgccagacctgttgtggtttttagc
ctttctgtacaggattacaatcctcctctttttactctgaatgttgaatgtggtggtggg
ttttatgtccgcagtttggttaatgaccttggcaaagaactttcttcatgtgcccatgta
aaggagttgatcagaaccaaacagggtccttttacactggatgaacatgcacttcaagag
gagaaatggacaatagttgaaatagtaaaagctgtagagtccggcgtgcaattaattcca
tccgaagtggcatgcaagaaattgaagatagattctcaggacaacagtgaacaagtgaaa
gaagctacttga
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