Chiloscyllium plagiosum (whitespotted bambooshark): 122561301
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Entry
122561301 CDS
T08871
Symbol
exosc1
Name
(RefSeq) exosome complex component CSL4 isoform X1
KO
K07573
exosome complex component CSL4
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Pathway
cpla03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122561301 (exosc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpla03019
]
122561301 (exosc1)
Messenger RNA biogenesis [BR:
cpla03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
122561301 (exosc1)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
122561301 (exosc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EXOSC1
ECR1_N
S1_RRP4
Motif
Other DBs
NCBI-GeneID:
122561301
NCBI-ProteinID:
XP_043568911
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All DBs
Position
22:46867783..46885583
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AA seq
194 aa
AA seq
DB search
MAPLKFCIPGERLCSTEDGTPGNGTYSRHGYIFASLAGYVVKENDNGMVPVISVVRDSEP
QLLPEVGVVVTCKVTSINPRFVKVHILYVRSTPLKGTFRGTIRREDIRATEKDKVEVYKC
FRPGDIVLAKVISLGDAQSNYLLTTAENELGVVVAHSEAGEQMVPISWCEMQCPKSHGKE
FRKVARVQPEFLHT
NT seq
585 nt
NT seq
+upstream
nt +downstream
nt
atggcgccgctgaagttctgcatcccaggggagagactatgcagcactgaggacggcact
cctggtaatggcacgtactccaggcatggatatatttttgcatctttagctgggtatgtg
gtgaaagaaaacgacaatggaatggtgccagtcatatcagtagttcgggactcagagcct
cagctcctgccagaggtcggtgttgttgtaacgtgcaaggtgaccagcataaaccctagg
tttgtcaaagtccatattttatatgtacgatccactccactgaaagggacttttcgagga
accatcagaagagaagatattcgagcaacagaaaaggacaaggtagaggtttacaaatgc
ttcagacctggtgatattgttttagcaaaagtgatctcgttaggtgatgctcagtccaac
tacttgctgacgacagcagagaatgaacttggtgtagtagtcgcacacagtgaggcaggt
gagcagatggttcctatcagctggtgtgagatgcagtgccccaaatcccatgggaaagag
ttccggaaagtagctcgtgttcaacctgaattccttcatacctga
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